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Conserved domains on  [gi|487953988|ref|WP_002027454|]
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MULTISPECIES: type IV pilus biogenesis/stability protein PilW [Acinetobacter]

Protein Classification

type IV pilus biogenesis/stability protein PilF/PilW( domain architecture ID 11494436)

type IV pilus biogenesis/stability protein PilF/PilW is an outer membrane lipoprotein that is required for multimerization and localization of type IV pilus secretin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 14-246 9.42e-73

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


:

Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 222.21  E-value: 9.42e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   14 VAVALLTSGCQTSQTV-----KKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskp 88
Cdd:TIGR02521   3 LVFLLALTGCVTTPDVprssrTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFK 168
Cdd:TIGR02521  80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988  169 QALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTvgqKNQGARALWIGLRVARANADKMGMQVLVNQLRALFP 246
Cdd:TIGR02521 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 14-246 9.42e-73

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 222.21  E-value: 9.42e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   14 VAVALLTSGCQTSQTV-----KKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskp 88
Cdd:TIGR02521   3 LVFLLALTGCVTTPDVprssrTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFK 168
Cdd:TIGR02521  80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988  169 QALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTvgqKNQGARALWIGLRVARANADKMGMQVLVNQLRALFP 246
Cdd:TIGR02521 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 27-243 1.40e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG2956   67 KLLERDPDRA-EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG---DWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 107 NAQARNNYGTYLYQMERYNDAIEQFRIAgatLGYDQRYQ-ALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELA 185
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKA---LKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988 186 EIFYLQQQIPAATQMYEQYVRtvgQKNQGARALWIGLRVARANADKMGMQVLVNQLRA 243
Cdd:COG2956  220 ELYEKLGDPEEALELLRKALE---LDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 42-171 2.45e-07

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 50.07  E-value: 2.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQegsKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQM 121
Cdd:NF040959  76 RLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLK---IKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGL 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 487953988 122 ERYNDAIEQFRIAGATLGYDQRYQalENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:NF040959 153 GQYDKAIEAFQKALELDPNEIKYH--QAIGFMYVQKGDHETAAEHFKKAM 200
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 42-188 1.95e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.01  E-value: 1.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDnaqarNNYGTYLY-- 119
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELG---DVEEAREVLLRAIELDPD-----GGYEKYLYlg 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487953988 120 QMERYNDAIEQFRIAgatlgydqrYQALENLGRIYLKLGDIASAEKTFKQALLANrdSYISMlelAEIF 188
Cdd:cd24142   77 QLSGGEEALQYYEKG---------IEILEEELQALQAASAEAEEEAEELKRKLSS--ALCAL---AEIY 131
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 42-106 6.22e-06

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 46.73  E-value: 6.22e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPE 246
TPR_12 pfam13424
Tetratricopeptide repeat;
108-171 2.08e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 2.08e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  108 AQARNNYGTYLYQMERYNDAIEQFR----IAGATLGYD--QRYQALENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEkaleIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERAL 72
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-176 5.74e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 5.74e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 487953988   144 YQALENLGRIYLKLGDIASAEKTFKQALLANRD 176
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 14-246 9.42e-73

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 222.21  E-value: 9.42e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   14 VAVALLTSGCQTSQTV-----KKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskp 88
Cdd:TIGR02521   3 LVFLLALTGCVTTPDVprssrTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFK 168
Cdd:TIGR02521  80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988  169 QALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTvgqKNQGARALWIGLRVARANADKMGMQVLVNQLRALFP 246
Cdd:TIGR02521 160 RALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 27-243 1.40e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.94  E-value: 1.40e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG2956   67 KLLERDPDRA-EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG---DWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 107 NAQARNNYGTYLYQMERYNDAIEQFRIAgatLGYDQRYQ-ALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELA 185
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKA---LKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLA 219

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988 186 EIFYLQQQIPAATQMYEQYVRtvgQKNQGARALWIGLRVARANADKMGMQVLVNQLRA 243
Cdd:COG2956  220 ELYEKLGDPEEALELLRKALE---LDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
32-258 1.66e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 87.37  E-value: 1.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  32 DPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQAR 111
Cdd:COG0457    4 DPDDA-EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG---RYEEALADYEQALELDPDDAEAL 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 112 NNYGTYLYQMERYNDAIEQFRIAGATLGYDqrYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQ 191
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKALELDPDD--AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 487953988 192 QQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQLRALFPESPEYQRYLQLQ 258
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 29-206 4.90e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 86.71  E-value: 4.90e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  29 VKKDPEkAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNA 108
Cdd:COG2956   35 LELDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG---LLDRAEELLEKLLELDPDDA 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 109 QARNNYGTYLYQMERYNDAIEQFRIAGATlgYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIF 188
Cdd:COG2956  111 EALRLLAEIYEQEGDWEKAIEVLERLLKL--GPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188

                        170
                 ....*....|....*...
gi 487953988 189 YLQQQIPAATQMYEQYVR 206
Cdd:COG2956  189 LEQGDYEEAIAALERALE 206
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 36-193 1.29e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 88.13  E-value: 1.29e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  36 AVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYG 115
Cdd:COG3914   77 LAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG---RLEEALAALRRALALNPDFAEAYLNLG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 116 TYLYQMERYNDAIEQFRIAgatLGYD-QRYQALENLGRIYLKLGDIASAEKTFKQA--LLANRDSYISMLelaeIFYLQQ 192
Cdd:COG3914  154 EALRRLGRLEEAIAALRRA---LELDpDNAEALNNLGNALQDLGRLEEAIAAYRRAleLDPDNADAHSNL----LFALRQ 226


                 .
gi 487953988 193 Q 193
Cdd:COG3914  227 A 227
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-203 1.74e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.77  E-value: 1.74e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQM 121
Cdd:COG2956   13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRG---EYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 122 ERYNDAIEQFRIAGATlgYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMY 201
Cdd:COG2956   90 GLLDRAEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEAL 167


                 ..
gi 487953988 202 EQ 203
Cdd:COG2956  168 EK 169
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 39-177 5.38e-17

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 75.23  E-value: 5.38e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  39 VRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYL 118
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG---DLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 487953988 119 YQMERYNDAIEQFRIAGATlgYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDS 177
Cdd:COG4783   83 LKAGDYDEALALLEKALKL--DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
27-229 3.06e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 3.06e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG0457   33 KALELDPDDA-EALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG---RYEEALEDYDKALELDPD 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 107 NAQARNNYGTYLYQMERYNDAIEQFRIAgatLGYDQRY-QALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELA 185
Cdd:COG0457  109 DAEALYNLGLALLELGRYDEAIEAYERA---LELDPDDaDALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 487953988 186 EIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANA 229
Cdd:COG0457  186 AALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-206 2.74e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.74e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  64 LSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDqr 143
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLG---RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-- 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 487953988 144 YQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 68-206 1.08e-13

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 66.37  E-value: 1.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  68 SRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRiaGATLGYDQRYQAL 147
Cdd:COG4783    1 AACAEALYALAQALLLAG---DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLH--EALELDPDEPEAR 75

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 487953988 148 ENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:COG4783   76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 18-218 2.13e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 66.65  E-value: 2.13e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   18 LLTSGCQTSQTVKKDPEKaVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYF 97
Cdd:TIGR02917 311 LEQAYQYLNQILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG---DFEKAAEYL 386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   98 KRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGAT------------LGYDQRYQ------ALENL--------- 150
Cdd:TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLdpelgradllliLSYLRSGQfdkalaAAKKLekkqpdnas 466

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 487953988  151 -----GRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARAL 218
Cdd:TIGR02917 467 lhnllGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 89-255 3.31e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.75  E-value: 3.31e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATlgYDQRYQALENLGRIYLKLGDIASAEKTFK 168
Cdd:COG2956   23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--DPDRAEALLELAQDYLKAGLLDRAEELLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 169 QALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKnqgARALWIGLRVARANADKMGMQVLVNQLRALFPES 248
Cdd:COG2956  101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---AHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177


                 ....*..
gi 487953988 249 PEYQRYL 255
Cdd:COG2956  178 ARALLLL 184
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 27-150 3.44e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.95  E-value: 3.44e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG4235    8 QALAANPNDA-EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAEELLERALALDPD 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 487953988 107 NAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENL 150
Cdd:COG4235   84 NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
27-204 9.28e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.10  E-value: 9.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAvKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG0457   67 QALELDPDDA-EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG---RYDEAIEAYERALELDPD 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 107 NAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAE 186
Cdd:COG0457  143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAEL 222

                        170
                 ....*....|....*...
gi 487953988 187 IFYLQQQIPAATQMYEQY 204
Cdd:COG0457  223 LLLALALLLALRLAALAL 240
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
89-178 2.79e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 58.64  E-value: 2.79e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIeQFRIAgatLGYDQRY-QALENLGRIYLKLGDIASAEKTF 167
Cdd:COG3063    7 DLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKA---LKLDPNNaEALLNLAELLLELGDYDEALAYL 82

                         90
                 ....*....|.
gi 487953988 168 KQALLANRDSY 178
Cdd:COG3063   83 ERALELDPSAL 93
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 56-171 4.36e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.25  E-value: 4.36e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  56 AKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAg 135
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLG---RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA- 77

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 487953988 136 atLGYD-QRYQALENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:COG4235   78 --LALDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
42-171 4.24e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.39  E-value: 4.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQM 121
Cdd:COG4785   78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLG---DYDAALEDFDRALELDPDYAYAYLNRGIALYYL 154

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 487953988 122 ERYNDAIEQFR-----------------IAGATLGYDQRYQAL-ENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:COG4785  155 GRYELAIADLEkaleldpndperalwlyLAERKLDPEKALALLlEDWATAYLLQGDTEEARELFKLAL 222
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
30-204 1.89e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.46  E-value: 1.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  30 KKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDAtANMMMGILLQQEG----SKPNLEKAEHYFKRAISSEP 105
Cdd:COG4785   26 LAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGvaydSLGDYDLAIADFDQALELDP 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 106 DNAQARNNYGTYLYQMERYNDAIEQFRIAGATlgyDQRY-QALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLEL 184
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL---DPDYaYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWL 181

                        170       180
                 ....*....|....*....|
gi 487953988 185 AEIFYLQQQIPAATQMYEQY 204
Cdd:COG4785  182 YLAERKLDPEKALALLLEDW 201
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
47-134 3.94e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.87  E-value: 3.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  47 YIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHyFKRAISSEPDNAQARNNYGTYLYQMERYND 126
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG---RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDE 77


                 ....*...
gi 487953988 127 AIEQFRIA 134
Cdd:COG3063   78 ALAYLERA 85
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 89-174 1.34e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 52.66  E-value: 1.34e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  89 NLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRyqALENLGRIYLKLGDIASAEKTFK 168
Cdd:COG5010   69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN--AYSNLAALLLSLGQDDEAKAALQ 146


                 ....*.
gi 487953988 169 QALLAN 174
Cdd:COG5010  147 RALGTS 152
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 92-207 8.75e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.00  E-value: 8.75e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  92 KAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQryQALENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA--DALLDLAEALLAAGDTEEAEELLERAL 78

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 487953988 172 LANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRT 207
Cdd:COG4235   79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 27-193 1.40e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 1.40e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   27 QTVKKDPEkAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:TIGR02917 422 TAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG---DLAKAREAFEKALSIEPD 497

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  107 NAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRyqALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAE 186
Cdd:TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR--AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ 575


                  ....*..
gi 487953988  187 IFYLQQQ 193
Cdd:TIGR02917 576 YYLGKGQ 582
MamA NF040959
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ...
 42-171 2.45e-07

magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.


Pssm-ID: 468889 [Multi-domain]  Cd Length: 204  Bit Score: 50.07  E-value: 2.45e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQegsKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQM 121
Cdd:NF040959  76 RLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALLK---IKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGL 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 487953988 122 ERYNDAIEQFRIAGATLGYDQRYQalENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:NF040959 153 GQYDKAIEAFQKALELDPNEIKYH--QAIGFMYVQKGDHETAAEHFKKAM 200
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-203 1.28e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   14 VAVALLTSGCQtsqtvKKDPEKAVKVrtqlAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGSKPNLEKA 93
Cdd:TIGR02917   8 LCIALALSACG-----DQSPEELIEA----AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKE 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   94 ehyFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRiAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFKQALLA 173
Cdd:TIGR02917  79 ---LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELP-GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI 154

                         170       180       190
                  ....*....|....*....|....*....|
gi 487953988  174 NRDSYISMLELAEIFYLQQQIPAATQMYEQ 203
Cdd:TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDE 184
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 42-188 1.95e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 48.01  E-value: 1.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDnaqarNNYGTYLY-- 119
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELG---DVEEAREVLLRAIELDPD-----GGYEKYLYlg 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487953988 120 QMERYNDAIEQFRIAgatlgydqrYQALENLGRIYLKLGDIASAEKTFKQALLANrdSYISMlelAEIF 188
Cdd:cd24142   77 QLSGGEEALQYYEKG---------IEILEEELQALQAASAEAEEEAEELKRKLSS--ALCAL---AEIY 131
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-207 3.24e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 3.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   43 LAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMmgiLLQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQME 122
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLL---LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  123 RYNDAIEQFRIAGATlgYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLeLAEIFYLQQQIPAATQMYE 202
Cdd:TIGR02917 684 RTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEAVKTLE 760


                  ....*
gi 487953988  203 QYVRT 207
Cdd:TIGR02917 761 AWLKT 765
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 38-170 3.27e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 3.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   38 KVRTQLAAEYI------RSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDNAQAR 111
Cdd:TIGR02917 256 KAPNSPLAHYLkalvdfQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG---NLEQAYQYLNQILKYAPNSHQAR 332

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  112 NNYGTYLYQMERYNDAIeqfRIAGATLGYDQR-YQALENLGRIYLKLGDIASAEKTFKQA 170
Cdd:TIGR02917 333 RLLASIQLRLGRVDEAI---ATLSPALGLDPDdPAALSLLGEAYLALGDFEKAAEYLAKA 389
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
105-231 3.36e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 3.36e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 105 PDNAQARNNYGTYLYQMERYNDAIEQFRIAgatLGYDQRY-QALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLE 183
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQA---LELDPDLaEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 487953988 184 LAEIFYLQQQIPAATQMYEQYVRTvgQKNQGARALWIGLRVARANADK 231
Cdd:COG4785  147 RGIALYYLGRYELAIADLEKALEL--DPNDPERALWLYLAERKLDPEK 192
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 42-106 6.22e-06

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 46.73  E-value: 6.22e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 487953988  42 QLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG---DYAAAIEALERVEEQDPE 246
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 56-206 6.41e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 6.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  56 AKRSLDQALSVDSRDATANMMMGILLQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAG 135
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 487953988 136 ATLGYDqrYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:COG5010   82 QLDPNN--PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 24-206 1.25e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 46.23  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   24 QTSQTVKKDPekAVKVRTQ-LAAeyIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGSKPnleKAEHYFKRAIS 102
Cdd:PRK11447  259 AEQQKQLADP--AFRARAQgLAA--VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA---RAVAQFEKALA 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  103 SEPDnaqaRNNYGTY--LYQMERYNDAIEQfriagatlgydqryqalenlGRIYLKLGDIASAEKTFKQAL-LANRDSYi 179
Cdd:PRK11447  332 LDPH----SSNRDKWesLLKVNRYWLLIQQ--------------------GDAALKANNLAQAERLYQQARqVDNTDSY- 386

                         170       180
                  ....*....|....*....|....*..
gi 487953988  180 SMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:PRK11447  387 AVLGLGDVAMARKDYAAAERYYQQALR 413
TPR_12 pfam13424
Tetratricopeptide repeat;
108-171 2.08e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.99  E-value: 2.08e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  108 AQARNNYGTYLYQMERYNDAIEQFR----IAGATLGYD--QRYQALENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEkaleIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERAL 72
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 118-217 3.11e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 3.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988 118 LYQMERYNDAIEQFR-IAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFKQALLANRDSYI---SMLELAEIFYLQQQ 193
Cdd:COG1729    3 LLKAGDYDEAIAAFKaFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                         90       100
                 ....*....|....*....|....
gi 487953988 194 IPAATQMYEQYVRTVGQKNQGARA 217
Cdd:COG1729   83 YDKARATLEELIKKYPDSEAAKEA 106
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 89-171 3.14e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.29  E-value: 3.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  89 NLEKAEHYFKRAISSEPDN---AQARNNYGTYLYQMERYNDAIEQF-RIAGATLGYDQRYQALENLGRIYLKLGDIASAE 164
Cdd:COG1729    8 DYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFeKLLKRYPDSPKAPDALLKLGLSYLELGDYDKAR 87


                 ....*..
gi 487953988 165 KTFKQAL 171
Cdd:COG1729   88 ATLEELI 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 51-213 5.87e-05

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.20  E-value: 5.87e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   51 GDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGSkpnLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQ 130
Cdd:TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS---IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  131 FRIAgatlgydqryQALEN-LGRIYLKLG--------------DIASAEKTFKQALLANRDSYISMLELAEIFYLQQQIP 195
Cdd:TIGR00990 490 FDTA----------IELEKeTKPMYMNVLplinkalalfqwkqDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559

                         170       180
                  ....*....|....*....|.
gi 487953988  196 AATQMYEQ---YVRTVGQKNQ 213
Cdd:TIGR00990 560 EALKLFERaaeLARTEGELVQ 580
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 12-171 2.12e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 2.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   12 MGVAVALLTSGcQTSQTVK------KDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATA-NMMMGILLQQE 84
Cdd:TIGR02917 740 IKLHRALLASG-NTAEAVKtleawlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVlNNLAWLYLELK 818

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   85 GSKpnlekAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFR--IAGATLGYDQRYqaleNLGRIYLKLGDIAS 162
Cdd:TIGR02917 819 DPR-----ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRkaVNIAPEAAAIRY----HLALALLATGRKAE 889


                  ....*....
gi 487953988  163 AEKTFKQAL 171
Cdd:TIGR02917 890 ARKELDKLL 898
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
27-109 4.88e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 4.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  27 QTVKKDPEKAVkVRTQLAAEYIRSGDLDSAKRsLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPD 106
Cdd:COG3063   17 KALELDPDNAD-ALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG---DYDEALAYLERALELDPS 91


                 ...
gi 487953988 107 NAQ 109
Cdd:COG3063   92 ALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
91-206 1.19e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  91 EKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDIASAEKTFKQA 170
Cdd:COG4785   20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA 99

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 487953988 171 LLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:COG4785  100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135
TPR_12 pfam13424
Tetratricopeptide repeat;
146-206 2.66e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 2.66e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 487953988  146 ALENLGRIYLKLGDIASAEKTFKQALLANRDSY--------ISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:pfam13424   5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpdhpltaTTLLNLGRLYLELGRYEEALELLERALA 73
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 43-173 3.85e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 37.97  E-value: 3.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  43 LAAEY--IRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGskpNLEKAEHYFKRAISSEPDnaqarnnygtylyq 120
Cdd:COG3071  228 LVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQ---LWGKAREYLEAALALRPS-------------- 290

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 487953988 121 meryndaieqfriagatlgydqrYQALENLGRIYLKLGDIASAEKTFKQALLA 173
Cdd:COG3071  291 -----------------------AEAYAELARLLEQLGDPEEAAEHYRKALAL 320
TPR_8 pfam13181
Tetratricopeptide repeat;
144-176 3.89e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 34.29  E-value: 3.89e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 487953988  144 YQALENLGRIYLKLGDIASAEKTFKQALLANRD 176
Cdd:pfam13181   1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 144-176 5.74e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 5.74e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 487953988   144 YQALENLGRIYLKLGDIASAEKTFKQALLANRD 176
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
32-227 6.17e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 37.92  E-value: 6.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988   32 DPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQ---EGSKPNLEKAEHYFKRAISSE---- 104
Cdd:COG3899   700 ERDRAARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELaeaLYLAGRFEEAEALLERALAARalaa 779

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  105 ---------PDNAQARNNYGtyLYQMERYNDAIEQFRIAGATL----GYDQRYQALENLGRIYLKLGDIASAEKTFKQAL 171
Cdd:COG3899   780 laalrhgnpPASARAYANLG--LLLLGDYEEAYEFGELALALAerlgDRRLEARALFNLGFILHWLGPLREALELLREAL 857

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 487953988  172 LANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARA 227
Cdd:COG3899   858 EAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAAL 913
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 124-229 6.69e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 6.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  124 YNDAIEQFRIAGATLGYDQ--RYQalenLGRIYLKLGDIASAEKTFKQALLANRDSYISMLELAEIFYLQQQipaatqmY 201
Cdd:TIGR02917  38 YKAAIIQLKNALQKDPNDAeaRFL----LGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGK-------F 106

                          90       100
                  ....*....|....*....|....*...
gi 487953988  202 EQYVRTVGQKNQGARALWIGLRVARANA 229
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLA 134
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 48-184 6.74e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 36.76  E-value: 6.74e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  48 IRSGDLDSAKRSLDQALSVDSRDATANMMMGILLQQEGSKPNLEKAEHYFKRAISSEPDN---AQARNNYGTYLYQMERY 124
Cdd:COG2976   64 LAAGDAAAAAAAAEKLIDDYGGTAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKY 143

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 487953988 125 NDAIEQF-RIAGAtlGYDQRYQalENLGRIYLKLGDIASAEKTFKQAL--LANRDSYISMLEL 184
Cdd:COG2976  144 DEALATLdAVKPE--AFAALYA--ELRGDILLAQGDKAEARAAYQKALaaLPEDAPLRQLLQM 202
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 120-228 7.31e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 37.29  E-value: 7.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  120 QMERYNDAIEQFRIAGATLGYDQ---RYQALENLGRIYLKLGDIASAEKTFKQALLANR------DSYISMLELAEIFYL 190
Cdd:pfam17874  13 SKGDAERALELAEQALALLPEDDllaRGLATFVLGEAYLCLGDLDAALQAMREAEALARradsphVTLWALLQQGEILRA 92

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 487953988  191 QQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARAN 228
Cdd:pfam17874  93 QGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLAD 130
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 82-206 9.29e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 37.10  E-value: 9.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 487953988  82 QQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQF-RIAgatlgyDQRYQ----ALENLGRIYLK 156
Cdd:PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALeRVE------EQDPEylseVLPKLMECYQA 261

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 487953988 157 LGDIASAEKtFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVR 206
Cdd:PRK11788 262 LGDEAEGLE-FLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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