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Conserved domains on  [gi|485651829|ref|WP_001297290|]
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MULTISPECIES: maltose ABC transporter permease MalF [Enterobacteriaceae]

Protein Classification

sugar transporter permease( domain architecture ID 11485143)

sugar transporter permease similar to MalF, which is one of the two integral inner membrane subunits (MalFG) of the maltose ABC transport complex (MalFGKE); the MalFG subunits form a heterodimeric translocation pore with a dimer of the ATPase subunit (MalK)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


:

Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1039.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829   1 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  81 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQ 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 159 LKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 238 QSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 485651829 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1039.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829   1 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  81 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQ 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 159 LKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 238 QSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 485651829 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 100-260 9.30e-90

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 271.82  E-value: 9.30e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  100 LTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQLKETTAQPEGERANLRVIT 177
Cdd:pfam14785   1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  178 QNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYT 256
Cdd:pfam14785  81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160


                  ....
gi 485651829  257 VTTG 260
Cdd:pfam14785 161 VTIG 164
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
260-510 1.08e-65

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 214.61  E-value: 1.08e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVqWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:COG1175   61 GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKWL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 340 FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG1175  136 FNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITL 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVNYTYRIAFEgggGQDFGLAAAIATLIFLLVG 499
Cdd:COG1175  216 PLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLIIL 284

                        250
                 ....*....|.
gi 485651829 500 ALAIVNLKATR 510
Cdd:COG1175  285 VLTLLQLRLLR 295
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 281-498 5.07e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.19  E-value: 5.07e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 281 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGVKPA 360
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 361 WFSDPTTARTMLIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261   66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 485651829 441 FVLIQLLTNGGPDRLGTttpagytdllvnYTYRIaFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261  145 FALVSFLGGGEAPGPGT------------GLLLI-FAILFPGDLGVAAAVALILLLLS 189
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 259-435 1.86e-10

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 60.87  E-value: 1.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  259 TGWKNFTRVFTDEGIQKpflAIFVwTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKG 338
Cdd:TIGR01581   5 LGGSHILSALTDPENIK---ALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  339 LFNqSFGEINMMLSALfGVKPAwFSdpttaRTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR01581  81 LFG-RNGLLGPYLEAA-GIQVI-FS-----TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKIT 152

                         170
                  ....*....|....*..
gi 485651829  419 LPLLIKPLTPLMIASFA 435
Cdd:TIGR01581 153 LPMARPGLLAGLVLAWA 169
 
Name Accession Description Interval E-value
malF PRK10999
maltose ABC transporter permease MalF;
1-514 0e+00

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 1039.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829   1 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVL 80
Cdd:PRK10999   4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  81 FPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQ 158
Cdd:PRK10999  84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 159 LKETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 238 QSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483

                        490       500       510
                 ....*....|....*....|....*....|....*..
gi 485651829 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
MalF_P2 pfam14785
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ...
 100-260 9.30e-90

Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.


Pssm-ID: 434209  Cd Length: 164  Bit Score: 271.82  E-value: 9.30e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  100 LTFERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKF--GGEQKLQLKETTAQPEGERANLRVIT 177
Cdd:pfam14785   1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  178 QNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDG-TLTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYT 256
Cdd:pfam14785  81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160


                  ....
gi 485651829  257 VTTG 260
Cdd:pfam14785 161 VTIG 164
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
260-510 1.08e-65

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 214.61  E-value: 1.08e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVqWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:COG1175   61 GLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKWL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 340 FNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG1175  136 FNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITL 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVNYTYRIAFEgggGQDFGLAAAIATLIFLLVG 499
Cdd:COG1175  216 PLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLIIL 284

                        250
                 ....*....|.
gi 485651829 500 ALAIVNLKATR 510
Cdd:COG1175  285 VLTLLQLRLLR 295
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
257-510 5.75e-27

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 114.10  E-value: 5.75e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 257 VTTGWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIF 336
Cdd:COG1178   36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 337 KGLFNQSfGEINMMLSALFGVKPAWFSDPTtartMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFK 416
Cdd:COG1178  112 IALFGPN-GLLNTLLRALFGLEPPDIYGLG----GIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRR 186

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 417 ITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnggpdRLGTTTpagytdllvnYTYRIAFEGGGGQDFGLAAAIATLIFL 496
Cdd:COG1178  187 VTLPLLRPAIAAGALLVFLLCLADFGTPLVL------GGGYTT----------LTTAIYQAWLGDFDLGAAAALALVLLL 250

                        250
                 ....*....|....
gi 485651829 497 LVGALAIVNLKATR 510
Cdd:COG1178  251 LVLLLLLLERRLRR 264
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
260-512 2.35e-23

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 99.90  E-value: 2.35e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 260 GWKNFTRVFTDEgiqkPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWeALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:PRK10561  40 GLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIFL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 340 FNQSFGEINMMLsALFGVKpaWFSDPTTARTMLIIV--NTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKI 417
Cdd:PRK10561 115 FNPGRGLITHFL-AEFGYD--WNHAQNSGQAMFLVVfaSVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 418 TLPlLIKPLTPLMIA---SFAFnFNNFVLIQLLTNGGPDRLGTTtpagytdllvnYTYRIAFEGGGGQDFGLAAAIATLI 494
Cdd:PRK10561 192 ALP-LIAPVSFFLLVvnlVYAF-FDTFPVIDAATSGGPVQATTT-----------LIYKIYREGFTGLDLSSSAAQSVVL 258

                        250
                 ....*....|....*...
gi 485651829 495 FLLVGALAIVNLKATRMK 512
Cdd:PRK10561 259 MFLVIVLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 281-498 5.07e-23

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.19  E-value: 5.07e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 281 FVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGVKPA 360
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 361 WFSDPTTARTMLIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261   66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 485651829 441 FVLIQLLTNGGPDRLGTttpagytdllvnYTYRIaFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261  145 FALVSFLGGGEAPGPGT------------GLLLI-FAILFPGDLGVAAAVALILLLLS 189
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 260-504 1.05e-20

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 92.85  E-value: 1.05e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLA-CLVQWEALRGKAVYRVLLILPYavpsFISIL---- 334
Cdd:COG4209   71 GLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlLLNELRSKRFKKTVQTISYLPH----FLSWVvvag 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 335 IFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 414
Cdd:COG4209  143 IVYQFLSPDTGLVNQLLRALGGEPINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQI 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 415 FKITLPLLIKPLTPLMIASFAFNFN-NFVLIQLLTNggpdrlgtttPAGY--TDLLVNYTYRIAFEGGggqDFGLAAAIA 491
Cdd:COG4209  223 WHITLPGIRPTIVILLILNIGNILNvGFEQIYLLYN----------PLNYstSDVIDTYVYRIGLQNG---DYSYATAVG 289

                        250
                 ....*....|....*...
gi 485651829 492 TL-----IFLLVGALAIV 504
Cdd:COG4209  290 LFksvvgLILVLIANKIA 307
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 244-510 7.05e-20

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 89.40  E-value: 7.05e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 244 GNWGDEKLSPGYTvttgWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLIL 323
Cdd:COG1177   34 DSWFLTFPPEGFT----LRWYAELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 324 PYAVPSFI---SILIFkglfnqsFGEINMMLSaLFGVkpawfsdpttartmlIIVNTWLGYPYMMILCMGLLKAIPDDLY 400
Cdd:COG1177  106 PLVVPGIVlgvALLLL-------FSALGLSGG-LWGL---------------ILAHVVFTLPFVVLVVLARLQGFDPSLE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 401 EASAMDGAGPFQNFFKITLPLlikpLTPLMIA----SFAFNFNNFVLIQLLTNGGPdrlgTTTPagyTDLLVNYTYRIAF 476
Cdd:COG1177  163 EAARDLGASPWQTFRRVTLPL----IAPGILAgallAFTLSFDEFVITLFLAGPGV----TTLP---VYIYSMIRRGISP 231

                        250       260       270
                 ....*....|....*....|....*....|....
gi 485651829 477 EggggqdfglAAAIATLIFLLVGALAIVNLKATR 510
Cdd:COG1177  232 E---------INALSTLLILLSLLLLLLAERLRR 256
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 234-510 1.95e-19

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 88.67  E-value: 1.95e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 234 IGFYQSITADGNWGDekLSPGYTvttgWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRG 313
Cdd:COG1176   32 LLLVYSFTTRDPYGG--VVPGFT----LENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRW 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 314 KAVYRVLLILPYAVPSFISILIFKGLFNQSfGEINMMLSALfGVKPAWFSdPTTARTMLIIVNTWLGYPYMMILCMGLLK 393
Cdd:COG1176  102 RNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLLNSLLLAL-GLIDEPLR-LLYTEFAVVIGLVYVYLPFMVLPLYAALE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 394 AIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnGGPDR--LGTTtpagytdllvnyt 471
Cdd:COG1176  179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVlmIGNL------------- 243

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 485651829 472 yrIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKATR 510
Cdd:COG1176  244 --IYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLR 280
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
251-504 6.88e-15

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 77.12  E-value: 6.88e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 251 LSPGYTVTTGWKNFTRVFTDEGIQKPFLaifvWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPS- 329
Cdd:COG1178  314 LTKALDDNLTLDNYRFVLLDPSLLRALL----NSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGi 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 330 FISIlifkGLFnqsfgeinmmlsaLFGVKPAWFSDPTTArTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAG 409
Cdd:COG1178  390 VLGL----GLL-------------LLFNRPLPLLLYGTL-AILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGAS 451

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 410 PFQNFFKITLPLLIKPLtplmIASFAFNF----NNFVLIQLLTNGGpdrlgtttpagyTDLLVNYTYRIAFEGgggqDFG 485
Cdd:COG1178  452 PLRTLRRVTLPLLRPGL----LAAALLVFvtsmKELSATLLLRPPG------------FETLAVLIYQLASSG----RYG 511

                        250
                 ....*....|....*....
gi 485651829 486 LAAAIATLIFLLVGALAIV 504
Cdd:COG1178  512 EAAALALLLVLVSLLPVLL 530
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 312-505 3.65e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 70.79  E-value: 3.65e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  312 RGKAVYRVLLILPYAVPSFISILIFkglfnqsfgeinmmlsalfgVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGL 391
Cdd:pfam00528  15 RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIILALLGWAGYARLIRRAA 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  392 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPdrLGTTTPAGYTDLLVNYT 471
Cdd:pfam00528  75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPG--LGLLLIEAILGYDYPEI 152

                         170       180       190
                  ....*....|....*....|....*....|....
gi 485651829  472 YRIAfeggggqdFGLAAAIATLIFLLVGALAIVN 505
Cdd:pfam00528 153 QGPV--------LAAALILLLLNLLVDILQRLLD 178
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 261-496 9.41e-13

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 68.58  E-value: 9.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 261 WKNFTRVFTDEgiqkPFLAIFVWTVVFSLITVFLTVAVGMVLA-CLVQWEaLRGKAVYRVLLILPYAVPsFISILIfkGL 339
Cdd:COG0395   60 LENYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAyALARFR-FRGRKLLFLLILATLMIP-GQVLLI--PL 131

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 340 FnQSFGEINMmLSALFGvkpawfsdpttartmLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:COG0395  132 Y-LLFRQLGL-LNTYWG---------------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVL 194

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 485651829 420 PLLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdrlgttTPAGYTdllvnYTYRIA-FEGGGGQDFGLAAAIATLIFL 496
Cdd:COG0395  195 PLSKPALATVAIFTFIGAWNDFLWPLILLT---------SPDLRT-----LPVGLAsFQGQYGTDWGLLMAAAVIATL 258
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 259-435 1.86e-10

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 60.87  E-value: 1.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  259 TGWKNFTRVFTDEGIQKpflAIFVwTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKG 338
Cdd:TIGR01581   5 LGGSHILSALTDPENIK---ALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  339 LFNqSFGEINMMLSALfGVKPAwFSdpttaRTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR01581  81 LFG-RNGLLGPYLEAA-GIQVI-FS-----TLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKIT 152

                         170
                  ....*....|....*..
gi 485651829  419 LPLLIKPLTPLMIASFA 435
Cdd:TIGR01581 153 LPMARPGLLAGLVLAWA 169
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 251-447 6.84e-09

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 57.08  E-value: 6.84e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 251 LSPGYTVTTG--------WKNFTRVFTdegiQKPFLAIFVWTVVFSLITVFLTVAVGMVLAclvqwEAL-----RGKAVY 317
Cdd:COG3833   41 FNPGGSLYSSslipenftLENYKKLFT----ETPFLRWFLNSLIVAVVTAIISVFLAALAA-----YAFsrfrfKGRKAG 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829 318 RVLLILPYAVPSFISI----LIFK--GLFNQSFGEINMMLSALfgvkpawfsdpttartmlIIVNTWLGYPYMmilcmgl 391
Cdd:COG3833  112 LLALLLLQMFPAFLALvalyLLLSalGLLNTLLGLILVYLGGA------------------IPFNTWLMKGYF------- 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 485651829 392 lKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 447
Cdd:COG3833  167 -DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVL 221
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 260-501 2.64e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 53.15  E-value: 2.64e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  260 GWKNFTRVFTDEGiqkpFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGL 339
Cdd:TIGR03262  39 GLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYL 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  340 F-NQSfgeinmMLSALFGVKPAWfsdpttARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:TIGR03262 115 FgNQG------LLKGLLGGFSIY------GFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVT 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 485651829  419 LPLLIKPLTPLMIASFAFNFNNFvliqlltnGGPDRLGTTTPAGYTDLlvnYTYRIafeggGGQDFGLAAAIATLifLLV 498
Cdd:TIGR03262 183 LPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGVL--LLL 244


                  ...
gi 485651829  499 GAL 501
Cdd:TIGR03262 245 PAL 247
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
395-458 8.24e-04

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 41.26  E-value: 8.24e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 485651829 395 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdRLGTT 458
Cdd:PRK10973 169 LPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDV--SLGTA 230
TM_PBP2_N pfam16296
N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of ...
 78-144 4.39e-03

N-terminal of TM subunit in PBP-dependent ABC transporters; This family mainly consists of Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs, such as Binding-protein-dependent transport systems inner membrane component and Maltose transport permease MalF. It is around 580 residues in length and is mainly found in various species, such as Thermotoga, Dictyoglomus, Thermosipho, Fervidobacterium, Mesotoga and so on. The function of this family is unknown.


Pssm-ID: 435260  Cd Length: 79  Bit Score: 36.17  E-value: 4.39e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 485651829   78 FVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLLDRSWQ---AGKTYNFGL----YPAGDEWQLALSDGETGKNY 144
Cdd:pfam16296   6 FQVFPVLYTASTAFTNYGDGHRGTKEQAIAAIQASSVKrvpGSPEYALTVatkgSPTTGDLVFLLTDPDTGKVY 79
malG PRK10998
maltose ABC transporter permease MalG;
390-434 9.45e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 38.15  E-value: 9.45e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 485651829 390 GLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASF 434
Cdd:PRK10998 179 GYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSF 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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