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Conserved domains on  [gi|447204832|ref|WP_001282088|]
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MULTISPECIES: flagellar motor switch protein FliN [Enterobacteriaceae]

Protein Classification

flagellar motor switch protein FliN( domain architecture ID 11483010)

flagellar motor switch protein FliN is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-137 9.82e-90

flagellar motor switch protein FliN; Validated


:

Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 256.64  E-value: 9.82e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832   1 MSDMNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKATSSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
Cdd:PRK07963  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-137 9.82e-90

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 256.64  E-value: 9.82e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832   1 MSDMNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKATSSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
Cdd:PRK07963  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 53-129 7.59e-36

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 118.08  E-value: 7.59e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832   53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 45-127 5.69e-35

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 118.95  E-value: 5.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  45 GDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
Cdd:COG1886   90 PEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITE 169


                 ...
gi 447204832 125 IIT 127
Cdd:COG1886  170 IVS 172
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 62-127 2.24e-23

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 86.24  E-value: 2.24e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447204832   62 VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
 
Name Accession Description Interval E-value
fliN PRK07963
flagellar motor switch protein FliN; Validated
 1-137 9.82e-90

flagellar motor switch protein FliN; Validated


Pssm-ID: 181183 [Multi-domain]  Cd Length: 137  Bit Score: 256.64  E-value: 9.82e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832   1 MSDMNNPADDNNGAMDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLR 80
Cdd:PRK07963   1 MSDMNNPSDDNNGAMDDLWAEALNEQKATSSKSAADAVFQQLGGGDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
Cdd:PRK07963  81 LTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR 137
PRK08119 PRK08119
flagellar motor switch protein; Validated
 37-135 4.86e-43

flagellar motor switch protein; Validated


Pssm-ID: 236154 [Multi-domain]  Cd Length: 382  Bit Score: 145.39  E-value: 4.86e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  37 AVFQQFGGGDVSGALQ-DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVA 115
Cdd:PRK08119 282 AQFQSFDPPPLATTEPrNLDLILDVPLQVTVELGRTKKSIKDILELGTGSIIELDKLAGEPVDILVNGKLIAKGEVVVID 361

                         90       100
                 ....*....|....*....|
gi 447204832 116 DKYGVRITDIITPSERMRRL 135
Cdd:PRK08119 362 ENFGVRITDIVSQSERIKSL 381
fliN PRK05698
flagellar motor switch protein FliN;
1-135 1.32e-37

flagellar motor switch protein FliN;


Pssm-ID: 168189 [Multi-domain]  Cd Length: 155  Bit Score: 125.30  E-value: 1.32e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832   1 MSDMNNPADDNNGAMDDLWAEALSE-----QKSTSGKSAADAV---------FQQFG-----GGDVSGALQDIDLIMDIP 61
Cdd:PRK05698   1 MADENDITSPEDQALADEWAAALEEagdagQDDIDALLGADAGaepsgprapMEEFGsspkpNEPVSLEGPNLDVILDIP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447204832  62 VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
Cdd:PRK05698  81 VSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKL 154
fliN TIGR02480
flagellar motor switch protein FliN; Proteins that consist largely of the domain described by ...
 53-129 7.59e-36

flagellar motor switch protein FliN; Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 131533 [Multi-domain]  Cd Length: 77  Bit Score: 118.08  E-value: 7.59e-36
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832   53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPS 129
Cdd:TIGR02480   1 NIDLILDIPVELTVELGRTRITLGDLLKLGEGSVIELDKLAGEPLDILVNGRLIARGEVVVVEDKFGIRITEIVDSS 77
FliN COG1886
Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular ...
 45-127 5.69e-35

Flagellar motor switch/type III secretory pathway protein FliN [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441490 [Multi-domain]  Cd Length: 172  Bit Score: 118.95  E-value: 5.69e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  45 GDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITD 124
Cdd:COG1886   90 PEAEEEPENLDLLLDVPVEVTVELGRTRLTLRELLKLGPGSVIELDRLAGEPVDILVNGRLIARGEVVVVDDRFGVRITE 169


                 ...
gi 447204832 125 IIT 127
Cdd:COG1886  170 IVS 172
fliN PRK08983
flagellar motor switch protein FliN;
15-135 4.97e-34

flagellar motor switch protein FliN;


Pssm-ID: 236360 [Multi-domain]  Cd Length: 127  Bit Score: 115.23  E-value: 4.97e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  15 MDDLWAEALSEQKSTSGKSAADAVFQQFGGGDVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAG 94
Cdd:PRK08983   6 TADDWAAAMAEQALEEALAAELDELVDDSAPITEDEARKLDTILDIPVTISMEVGRSFISIRNLLQLNQGSVVELDRVAG 85

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 447204832  95 EPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERMRRL 135
Cdd:PRK08983  86 EPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKL 126
PRK08916 PRK08916
flagellar motor switch protein FliN;
1-126 1.24e-23

flagellar motor switch protein FliN;


Pssm-ID: 236350 [Multi-domain]  Cd Length: 116  Bit Score: 88.27  E-value: 1.24e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832   1 MSDMN--NPADDNNGAMDDLWAEALSEQKSTSGKSAAD--AVFqqfgggdvsgalqdidlimDIPVKLTVELGRTRMTIK 76
Cdd:PRK08916   1 MADNDlqVPLPDLNGADAPPEDDVGYNEEEQADRTAADleAVF-------------------DVPVQVSAVLGRSKMDVG 61

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 447204832  77 ELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
Cdd:PRK08916  62 QLLKLGPGSVLELDRKVGEAIDIYVNNRLVARGEVVLVEDRLGVTMTEII 111
FliMN_C pfam01052
Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal ...
 62-127 2.24e-23

Type III flagellar switch regulator (C-ring) FliN C-term; This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.


Pssm-ID: 460043 [Multi-domain]  Cd Length: 66  Bit Score: 86.24  E-value: 2.24e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447204832   62 VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIIT 127
Cdd:pfam01052   1 VELSAELGRTTLTLRELLNLKVGDVIPLDKPADEPVDVLVNGKPKFRGELGVVGGNLAVRITEIID 66
FliN_N pfam16973
Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a ...
 1-49 3.45e-20

Flagellar motor switch protein FliN N-terminal; FliN is one of three proteins that form a switch-complex at the base of the basal body of the flagellum; the switch regulates the flagellum-motor.


Pssm-ID: 435683  Cd Length: 50  Bit Score: 77.52  E-value: 3.45e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 447204832    1 MSDMNNPADDNNGAMDDLWAEALSEQKSTSGKSAA-DAVFQQFGGGDVSG 49
Cdd:pfam16973   1 MSDPKKPSDDDNTSADDLWAEALNEQQATEKTAAStDGVFKSLEGQDALG 50
PRK08432 PRK08432
flagellar motor switch protein FliY; Validated
 51-135 2.48e-19

flagellar motor switch protein FliY; Validated


Pssm-ID: 236264 [Multi-domain]  Cd Length: 283  Bit Score: 81.21  E-value: 2.48e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  51 LQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
Cdd:PRK08432 197 IKNINMILDVKLPVRVRIGQKKMLLKDVLSMDIGSVVELNQLANDPLEILVDDKVIAKGEVVIVDGNFGIQITEIGTKKE 276


                 ....*
gi 447204832 131 RMRRL 135
Cdd:PRK08432 277 RLEQL 281
PRK06782 PRK06782
flagellar motor switch protein; Reviewed
 53-126 5.10e-17

flagellar motor switch protein; Reviewed


Pssm-ID: 235861 [Multi-domain]  Cd Length: 528  Bit Score: 76.03  E-value: 5.10e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447204832  53 DIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDII 126
Cdd:PRK06782 455 DTSILQDVPMNVKVVFGSTKKTIQDILSLQENEVVVLDEDIDEPIRIYVNGVLVAYGELVNVDGFFGVKVTKSL 528
PRK08433 PRK08433
flagellar motor switch protein FliN;
46-126 1.03e-16

flagellar motor switch protein FliN;


Pssm-ID: 181423 [Multi-domain]  Cd Length: 111  Bit Score: 70.55  E-value: 1.03e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447204832  46 DVSGALQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
Cdd:PRK08433  18 YLEELICDYENLLDIEVDFSAELGTTQISLLEILKFEKGSVIDLEKPAGESVELYINGRIIGKGEVMVYEKNLAIRINEI 97


                 .
gi 447204832 126 I 126
Cdd:PRK08433  98 L 98
FliM COG1868
Flagellar motor switch protein FliM [Cell motility];
57-130 8.68e-15

Flagellar motor switch protein FliM [Cell motility];


Pssm-ID: 441473 [Multi-domain]  Cd Length: 326  Bit Score: 69.03  E-value: 8.68e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447204832  57 IMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
Cdd:COG1868  252 LEEAEVELSAELGETEITLRELLNLKVGDVIPLDKKVDDPLTVYVGGVPKFEGKPGVSNGRLAVKITEIIEEEE 325
SpaO_YscQ TIGR02551
type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type ...
 59-123 7.79e-14

type III secretion system apparatus protein YscQ/HrcQ; Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274196 [Multi-domain]  Cd Length: 298  Bit Score: 66.28  E-value: 7.79e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447204832   59 DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
Cdd:TIGR02551 232 QLPVTLEFELGRLTLTLAELAALQPGSVLELNVPVDGPVRLRANGRLLGRGELVDVGGRLGVRIL 296
PRK06033 PRK06033
flagellar motor switch protein FliN;
62-132 5.71e-09

flagellar motor switch protein FliN;


Pssm-ID: 180359 [Multi-domain]  Cd Length: 83  Bit Score: 49.76  E-value: 5.71e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447204832  62 VKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERM 132
Cdd:PRK06033   9 VELMVVLGRSSMPIHQVLRMGRGAVIPLDATEADEVWILANNHPIARGEVLIDRNRIAVEVTRAADMLDRM 79
fliM PRK06666
flagellar motor switch protein FliM; Validated
 55-130 7.05e-09

flagellar motor switch protein FliM; Validated


Pssm-ID: 235849 [Multi-domain]  Cd Length: 337  Bit Score: 52.53  E-value: 7.05e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447204832  55 DLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSE 130
Cdd:PRK06666 253 QQVQQAEVELVAELGEIKLTLSEILNLKVGDVIPLEKPADDPLIVYVDGKPKFLCQYGKSNGRKALQIEELIEREL 328
PRK05933 PRK05933
type III secretion system protein; Validated
 63-125 4.67e-08

type III secretion system protein; Validated


Pssm-ID: 180315 [Multi-domain]  Cd Length: 372  Bit Score: 50.23  E-value: 4.67e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447204832  63 KLTVELGRTRMTIKELLRLTQGSVVALDGL-AGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
Cdd:PRK05933 309 KLVAEVARYSLSVGEFLKLGPGSILQFDGVhPTLGVDIILNGAKVGRGEIIALGDVLGIRVLEV 372
PRK06933 PRK06933
YscQ/HrcQ family type III secretion apparatus protein;
59-123 1.38e-07

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 235891 [Multi-domain]  Cd Length: 308  Bit Score: 48.96  E-value: 1.38e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447204832  59 DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRIT 123
Cdd:PRK06933 236 QLPVQVSFEVGRQTLDLHTLTSLQPGSLIDLTTPVDGEVRLLANGRLLGHGRLVEIQGRLGVRVE 300
PRK08158 PRK08158
YscQ/HrcQ family type III secretion apparatus protein;
59-122 1.92e-07

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181259 [Multi-domain]  Cd Length: 303  Bit Score: 48.33  E-value: 1.92e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 447204832  59 DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRI 122
Cdd:PRK08158 229 QLPVKLEFVLYRKNVTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMDDTLGVEI 292
PRK06789 PRK06789
flagellar motor switch protein; Validated
 59-125 2.09e-06

flagellar motor switch protein; Validated


Pssm-ID: 180694 [Multi-domain]  Cd Length: 74  Bit Score: 42.93  E-value: 2.09e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 447204832  59 DIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
Cdd:PRK06789   6 DIPLTIYFEIGNTKKKIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKNGKMYVEIVEL 72
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
59-123 6.50e-06

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 44.04  E-value: 6.50e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447204832  59 DIPVKLTVELGRTRMTIKELLRLTQGSVVALDG-LAGEpLDILINGYLIAQGEVVVVADKYGVRIT 123
Cdd:PRK08035 250 QLPQQVVMEIGRLSLPIGQLRQLAVGDVLPVGGcFYPE-VTIRLNGRIIGQGELLACDNELMVRIT 314
PRK06788 PRK06788
flagellar motor switch protein; Validated
 54-125 3.22e-05

flagellar motor switch protein; Validated


Pssm-ID: 180693 [Multi-domain]  Cd Length: 119  Bit Score: 40.63  E-value: 3.22e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 447204832  54 IDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDI 125
Cdd:PRK06788  28 IDTVSDISIELGVKLGKASITLGDVKQLKVGDVLEVEKNLGHKVDVYLSNMKVGIGEAIVMDEKFGIIISEI 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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