|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09859 |
PRK09859 |
multidrug transporter subunit MdtE; |
1-385 |
0e+00 |
|
multidrug transporter subunit MdtE;
Pssm-ID: 137559 [Multi-domain] Cd Length: 385 Bit Score: 741.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 1 MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEG 80
Cdd:PRK09859 1 MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 81 DKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV 160
Cdd:PRK09859 81 DKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 161 EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV 240
Cdd:PRK09859 161 EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 241 QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATAL 320
Cdd:PRK09859 241 QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATAL 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447004728 321 ILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ 385
Cdd:PRK09859 321 ILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ 385
|
|
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
40-377 |
1.58e-100 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 301.09 E-value: 1.58e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 40 TLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNAR 119
Cdd:COG0845 2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 120 ITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQAdsL 199
Cdd:COG0845 82 AELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAGTP--L 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 200 VTVQRLDPIYVDLTQSVQDFLRMKEevasGQikqvqgstPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNP 279
Cdd:COG0845 160 FTIADLDPLEVEFDVPESDLARLKV----GQ--------PVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNP 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 280 NGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNaQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSG 359
Cdd:COG0845 228 DGLLRPGMFVRVRIVLGERENALLVPASAVVRD-GGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSG 306
|
330
....*....|....*...
gi 447004728 360 LQRIRPGIKARAISSSQE 377
Cdd:COG0845 307 LQRLRDGAKVRVVEAAAP 324
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
36-372 |
2.67e-81 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 251.85 E-value: 2.67e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 36 VGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTA 115
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 116 SNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQ 195
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 196 AdsLVTVQRLDPIYVDLTQSVQDFLRmkeeVASGQIKQvqgstpVQLNLENGKRYSqtGTLKFSDPTVDETTGSVTLRAI 275
Cdd:TIGR01730 161 T--LATIVDLDPLEADFSVPERDLPQ----LRRGQTLT------VELDALPGEEFK--GKLRFIDPRVDSGTGTVRVRAT 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 276 FPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNaQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRV 355
Cdd:TIGR01730 227 FPNPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIED-LNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQI 305
|
330
....*....|....*..
gi 447004728 356 IVSGLQRIRPGIKARAI 372
Cdd:TIGR01730 306 VTAGVVKLRDGAKVKVV 322
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
43-357 |
3.05e-81 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 251.57 E-value: 3.05e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 43 PGSVNVLSELPGRTVPYEVAE-IRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARIT 121
Cdd:pfam00529 1 LAPLTKGVEAPGRVVVSGNAKaVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 122 FNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVT 201
Cdd:pfam00529 81 LDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQANLLAT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 202 VQRLDPIYVDLTQSVQDFLR-MKEEVASGQIKQVQGSTPVQLNLENGKRYSQT----GTLKFSDPTVDETTGSVTLRAIF 276
Cdd:pfam00529 161 VAQLDQIYVQITQSAAENQAeVRSELSGAQLQIAEAEAELKLAKLDLERTEIRapvdGTVAFLSVTVDGGTVSAGLRLMF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 277 PNP-NGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRV 355
Cdd:pfam00529 241 VVPeDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGRFTGVVVGISPDTGPVRVVVDKAQGPYYPLRIGLSAGALV 320
|
..
gi 447004728 356 IV 357
Cdd:pfam00529 321 RL 322
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09859 |
PRK09859 |
multidrug transporter subunit MdtE; |
1-385 |
0e+00 |
|
multidrug transporter subunit MdtE;
Pssm-ID: 137559 [Multi-domain] Cd Length: 385 Bit Score: 741.92 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 1 MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEG 80
Cdd:PRK09859 1 MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 81 DKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV 160
Cdd:PRK09859 81 DKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 161 EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV 240
Cdd:PRK09859 161 EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQGSTPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 241 QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATAL 320
Cdd:PRK09859 241 QLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATAL 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 447004728 321 ILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ 385
Cdd:PRK09859 321 ILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ 385
|
|
| PRK15030 |
PRK15030 |
multidrug efflux RND transporter periplasmic adaptor subunit AcrA; |
1-385 |
1.43e-144 |
|
multidrug efflux RND transporter periplasmic adaptor subunit AcrA;
Pssm-ID: 184990 [Multi-domain] Cd Length: 397 Bit Score: 415.65 E-value: 1.43e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 1 MNRRR---KLLIPLLFCGAM-LTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRN 76
Cdd:PRK15030 1 MNKNRgftPLAVVLMLSGSLaLTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 77 FIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVA 156
Cdd:PRK15030 81 FKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 157 KAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQVQG 236
Cdd:PRK15030 161 KAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 237 STPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGK 316
Cdd:PRK15030 241 KAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGD 320
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 447004728 317 ATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPG--IKARAISSSQENASTESKQ 385
Cdd:PRK15030 321 ATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGvqVKAQEVTADNNQQAASGAQ 391
|
|
| AcrA |
COG0845 |
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope ... |
40-377 |
1.58e-100 |
|
Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms];
Pssm-ID: 440606 [Multi-domain] Cd Length: 324 Bit Score: 301.09 E-value: 1.58e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 40 TLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNAR 119
Cdd:COG0845 2 KVERGDVPETVEATGTVEARREVEVRARVSGRVEEVLVDEGDRVKKGQVLARLDPPDLQAALAQAQAQLAAAQAQLELAK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 120 ITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQAdsL 199
Cdd:COG0845 82 AELERYKALLKKGAVSQQELDQAKAALDQAQAALAAAQAALEQARANLAYTTIRAPFDGVVGERNVEPGQLVSAGTP--L 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 200 VTVQRLDPIYVDLTQSVQDFLRMKEevasGQikqvqgstPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNP 279
Cdd:COG0845 160 FTIADLDPLEVEFDVPESDLARLKV----GQ--------PVTVTLDAGPGKTFEGKVTFIDPAVDPATRTVRVRAELPNP 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 280 NGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNaQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSG 359
Cdd:COG0845 228 DGLLRPGMFVRVRIVLGERENALLVPASAVVRD-GGGAYVFVVDADGKVERRPVTLGRRDGDQVEVLSGLKAGDRVVVSG 306
|
330
....*....|....*...
gi 447004728 360 LQRIRPGIKARAISSSQE 377
Cdd:COG0845 307 LQRLRDGAKVRVVEAAAP 324
|
|
| PRK09578 |
PRK09578 |
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit; |
3-372 |
4.02e-90 |
|
MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 169982 [Multi-domain] Cd Length: 385 Bit Score: 276.67 E-value: 4.02e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 3 RRRKLLIPLLFCGAMLTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDK 82
Cdd:PRK09578 5 RRRRLLLAALVALFVLAGCGKGDSDAAAAAPREATVVTVRPTSVPMTVELPGRLDAYRQAEVRARVAGIVTARTYEEGQE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 83 VNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQ 162
Cdd:PRK09578 85 VKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 163 ATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIKQV-QGSTPVQ 241
Cdd:PRK09578 165 AQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDPIYVNFSQPAADVEALRRAVKSGRATGIaQQDVAVT 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 242 LNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQgKATALI 321
Cdd:PRK09578 245 LVRADGSEYPLKGKLLFSDLAVDPTTDTVAMRALFPNPERELLPGAYVRIALDRAVNPRAILVPRDALLRTAD-SASVKV 323
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 447004728 322 LDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAI 372
Cdd:PRK09578 324 VGQNGKVRDVEVEADQMSGRDWIVTRGLAGGERVIVDNAAQFAPGTAVKAV 374
|
|
| RND_mfp |
TIGR01730 |
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion ... |
36-372 |
2.67e-81 |
|
RND family efflux transporter, MFP subunit; This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 273776 [Multi-domain] Cd Length: 322 Bit Score: 251.85 E-value: 2.67e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 36 VGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTA 115
Cdd:TIGR01730 1 VTVATVESETLANTLTFPGSLEAVDEADLAAEVAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 116 SNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQ 195
Cdd:TIGR01730 81 ELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 196 AdsLVTVQRLDPIYVDLTQSVQDFLRmkeeVASGQIKQvqgstpVQLNLENGKRYSqtGTLKFSDPTVDETTGSVTLRAI 275
Cdd:TIGR01730 161 T--LATIVDLDPLEADFSVPERDLPQ----LRRGQTLT------VELDALPGEEFK--GKLRFIDPRVDSGTGTVRVRAT 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 276 FPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNaQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRV 355
Cdd:TIGR01730 227 FPNPDGRLLPGMFGRVTISLKVRSSAIVVPTQAVIED-LNGKYVYVVKNDGKVSKRPVEVGLRNGGYVEIESGLKAGDQI 305
|
330
....*....|....*..
gi 447004728 356 IVSGLQRIRPGIKARAI 372
Cdd:TIGR01730 306 VTAGVVKLRDGAKVKVV 322
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
43-357 |
3.05e-81 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 251.57 E-value: 3.05e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 43 PGSVNVLSELPGRTVPYEVAE-IRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARIT 121
Cdd:pfam00529 1 LAPLTKGVEAPGRVVVSGNAKaVQPQVSGIVTRVLVKEGDRVKAGDVLFQLDPTDYQAALDSAEAQLAKAQAQVARLQAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 122 FNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVT 201
Cdd:pfam00529 81 LDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLARRRVLAPIGGISRESLVTAGALVAQAQANLLAT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 202 VQRLDPIYVDLTQSVQDFLR-MKEEVASGQIKQVQGSTPVQLNLENGKRYSQT----GTLKFSDPTVDETTGSVTLRAIF 276
Cdd:pfam00529 161 VAQLDQIYVQITQSAAENQAeVRSELSGAQLQIAEAEAELKLAKLDLERTEIRapvdGTVAFLSVTVDGGTVSAGLRLMF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 277 PNP-NGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRV 355
Cdd:pfam00529 241 VVPeDNLLVPGMFVETQLDQVRVGQPVLIPFDAFPQTKTGRFTGVVVGISPDTGPVRVVVDKAQGPYYPLRIGLSAGALV 320
|
..
gi 447004728 356 IV 357
Cdd:pfam00529 321 RL 322
|
|
| PRK11556 |
PRK11556 |
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; |
64-385 |
1.00e-45 |
|
MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit;
Pssm-ID: 183194 [Multi-domain] Cd Length: 415 Bit Score: 161.88 E-value: 1.00e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 64 IRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTAR 143
Cdd:PRK11556 90 VRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQ 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 144 TQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQDFLRMK 223
Cdd:PRK11556 170 ALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATVV 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 224 EEVASGQikqvqgSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLL 303
Cdd:PRK11556 250 QAQKAGK------PLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKLKARFNNQDDALFPNQFVNARMLVDTLQNAVV 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 304 VPQEGVTHNAQGKATaLILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIK-----ARAISSSQEN 378
Cdd:PRK11556 324 IPTAALQMGNEGHFV-WVLNDENKVSKHLVTPGIQDSQKVVISAGLSAGDRVVTDGIDRLTEGAKvevvePQSATTPEEK 402
|
....*..
gi 447004728 379 ASTESKQ 385
Cdd:PRK11556 403 ATSREYA 409
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
56-296 |
4.58e-27 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 109.75 E-value: 4.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 56 TVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLA-------------------------- 109
Cdd:COG1566 40 RVEARVVTVAAKVSGRVTEVLVKEGDRVKKGQVLARLDPTDLQAALAQAEAQLAaaeaqlarleaelgaeaeiaaaeaql 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 110 -KALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTV---------------------------AKAAVE 161
Cdd:COG1566 120 aAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAaqaqlaqaqaglreeeelaaaqaqvaqAEAALA 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 162 QATINLQYANVTSPITGVSGKSSVTVGALVTANQadSLVTVQRLDPIYVDLtqsvqdflrmkeEVASGQIKQVQGSTPVQ 241
Cdd:COG1566 200 QAELNLARTTIRAPVDGVVTNLNVEPGEVVSAGQ--PLLTIVPLDDLWVEA------------YVPETDLGRVKPGQPVE 265
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 447004728 242 LNLENGKRYSQTGTLKF------SDPTVDETTGSVTLR-----AIFPNPNGDLLPGMYVTALVDEG 296
Cdd:COG1566 266 VRVDAYPDRVFEGKVTSispgagFTSPPKNATGNVVQRypvriRLDNPDPEPLRPGMSATVEIDTE 331
|
|
| PRK11578 |
PRK11578 |
macrolide transporter subunit MacA; Provisional |
67-366 |
3.32e-16 |
|
macrolide transporter subunit MacA; Provisional
Pssm-ID: 183211 [Multi-domain] Cd Length: 370 Bit Score: 79.05 E-value: 3.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 67 QVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQ-------AELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDY 139
Cdd:PRK11578 67 QVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAEnqikeveATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDL 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 140 DTART-------QLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALV-TANQADSLVTVQRLDPIYVD 211
Cdd:PRK11578 147 DTAATelavkqaQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTViAAQQAPNILTLADMSTMLVK 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 212 LTQSVQDFLRMKeevaSGQIK--QVQGstpvqlnlENGKRYSqtGTLKFSDPTVDETTGSVTLRAIF--PNPNGDLLPGM 287
Cdd:PRK11578 227 AQVSEADVIHLK----PGQKAwfTVLG--------DPLTRYE--GVLKDILPTPEKVNDAIFYYARFevPNPNGLLRLDM 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 447004728 288 YVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSglqRIRPG 366
Cdd:PRK11578 293 TAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVIIG---EAKPG 368
|
|
| PRK03598 |
PRK03598 |
putative efflux pump membrane fusion protein; Provisional |
68-298 |
1.08e-13 |
|
putative efflux pump membrane fusion protein; Provisional
Pssm-ID: 235136 [Multi-domain] Cd Length: 331 Bit Score: 71.15 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGS--------------------------LAKALSTASNARIT 121
Cdd:PRK03598 50 VGGRLASLAVDEGDAVKAGQVLGELDAAPYENALMQAKANvsvaqaqldlmlagyrdeeiaqaraaVKQAQAAYDYAQNF 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 122 FNRQASLLKTNYVSRQDYDTARTQLN--------------------------EAEANVTVAKAAVEQATINLQYANVTSP 175
Cdd:PRK03598 130 YNRQQGLWKSRTISANDLENARSSRDqaqatlksaqdklsqyregnrpqdiaQAKASLAQAQAALAQAELNLQDTELIAP 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 176 ITGVSGKSSVTVGALVTAnqADSLVTVQRLDPIYVdltqsvqdflrmKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGT 255
Cdd:PRK03598 210 SDGTILTRAVEPGTMLNA--GSTVFTLSLTRPVWV------------RAYVDERNLGQAQPGRKVLLYTDGRPDKPYHGQ 275
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 447004728 256 LKFSDPTVDETTGSVT-----------LRAIFPNPNGDLLPGMYVTALVDEGSR 298
Cdd:PRK03598 276 IGFVSPTAEFTPKTVEtpdlrtdlvyrLRIVVTDADDALRQGMPVTVRFADEAG 329
|
|
| HlyD_D23 |
pfam16576 |
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and ... |
61-289 |
3.54e-12 |
|
Barrel-sandwich domain of CusB or HlyD membrane-fusion; HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Pssm-ID: 435440 [Multi-domain] Cd Length: 214 Bit Score: 65.22 E-value: 3.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 61 VAEIRPQVGGIIIK--RNFiEGDKVNQGDSLYQIDpAPlqaELNSAKGSLAKALSTASNARitfnrqasllktnyvSRQD 138
Cdd:pfam16576 19 LAHVHARVEGWIEKlyVNA-TGDPVKKGQPLAELY-SP---ELVAAQQEYLLALRSGDALS---------------KSEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 139 YDTARTQL-----NEAEAnvtvakAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTAnqADSLVTVQRLDPIYVDLt 213
Cdd:pfam16576 79 LRAARQRLrllgmPEAQI------AELERTGKVQPTVTVYAPISGVVTELNVREGMYVQP--GDTLFTIADLSTVWVEA- 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 447004728 214 qsvqdflrmkeEVASGQIKQVQGSTPVQLNLEN--GKRYsqTGTLKFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYV 289
Cdd:pfam16576 150 -----------DVPEQDLALVKVGQPAEVTLPAlpGKTF--EGKVDYIYPTLDPKTRTVRVRIELPNPDGRLKPGMFA 214
|
|
| PRK10476 |
PRK10476 |
multidrug transporter subunit MdtN; |
60-196 |
4.30e-12 |
|
multidrug transporter subunit MdtN;
Pssm-ID: 182488 [Multi-domain] Cd Length: 346 Bit Score: 66.59 E-value: 4.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 60 EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLA---KALST--------ASNARI-------- 120
Cdd:PRK10476 47 DVVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPRPYELTVAQAQADLAladAQIMTtqrsvdaeRSNAASaneqvera 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 121 ---------TFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVA------------------------KAAVEQATINL 167
Cdd:PRK10476 127 ranaklatrTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQAllqaqaaaaavggvdalvaqraarEAALAIAELHL 206
|
170 180
....*....|....*....|....*....
gi 447004728 168 QYANVTSPITGVSGKSSVTVGALVTANQA 196
Cdd:PRK10476 207 EDTTVRAPFDGRVVGLKVSVGEFAAPMQP 235
|
|
| PRK15136 |
PRK15136 |
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA; |
62-211 |
4.75e-07 |
|
multidrug efflux MFS transporter periplasmic adaptor subunit EmrA;
Pssm-ID: 185090 [Multi-domain] Cd Length: 390 Bit Score: 51.23 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 62 AEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAK------------------------ALSTASN 117
Cdd:PRK15136 62 VQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDAEQAFEKAKTALANsvrqthqlminskqyqanielqktALAQAQS 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 118 ariTFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKA------------------AVEQAT-------INLQYANV 172
Cdd:PRK15136 142 ---DLNRRVPLGNANLIGREELQHARDAVASAQAQLDVAIQqynanqamilntpledqpAVQQAAtevrnawLALQRTKI 218
|
170 180 190
....*....|....*....|....*....|....*....
gi 447004728 173 TSPITGVSGKSSVTVGALVTANQadSLVTVQRLDPIYVD 211
Cdd:PRK15136 219 VSPMTGYVSRRSVQVGAQISPTT--PLMAVVPATNLWVD 255
|
|
| Biotin_lipoyl_2 |
pfam13533 |
Biotin-lipoyl like; |
60-109 |
2.52e-06 |
|
Biotin-lipoyl like;
Pssm-ID: 433286 Cd Length: 50 Bit Score: 43.97 E-value: 2.52e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 447004728 60 EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLA 109
Cdd:pfam13533 1 PVVKIASPVSGKVVAVNVKEGQQVKKGDVLATLDSPELQLQLQQAEAQLA 50
|
|
| PRK09783 |
PRK09783 |
copper/silver efflux system membrane fusion protein CusB; Provisional |
261-360 |
4.87e-06 |
|
copper/silver efflux system membrane fusion protein CusB; Provisional
Pssm-ID: 236625 [Multi-domain] Cd Length: 409 Bit Score: 48.33 E-value: 4.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 261 PTVDETTGSVTLRAIFPNPNGDLLPGMYVT----------------ALVDEGSRQNVLLVPQEG--------VTHNAQGK 316
Cdd:PRK09783 287 PSVDAATRTLQLRLEVDNADEALKPGMNAWlqlntasepmllipsqALIDTGSEQRVITVDADGrfvpkrvaVFQESQGV 366
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 447004728 317 AtalildkddvvqlreieaskAIGdqwvvtSGLQAGDRVIVSGL 360
Cdd:PRK09783 367 T--------------------AIR------SGLAEGEKVVSSGL 384
|
|
| HlyD_3 |
pfam13437 |
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator ... |
172-286 |
1.53e-05 |
|
HlyD family secretion protein; This is a family of largely bacterial haemolysin translocator HlyD proteins.
Pssm-ID: 433206 [Multi-domain] Cd Length: 104 Bit Score: 43.50 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 172 VTSPITGVSGKSSVTVGALVTAnqADSLVTVQRLDPIYVDLTQSVQDFLRMKEEVasgqikqvqgstPVQLNLENGKRYS 251
Cdd:pfam13437 2 IRAPVDGVVAELNVEEGQVVQA--GDPLATIVPPDRLLVEAFVPAADLGSLKKGQ------------KVTLKLDPGSDYT 67
|
90 100 110
....*....|....*....|....*....|....*..
gi 447004728 252 QTGTLKFSDPTVDETTGSVTLRAIFPNPNGD--LLPG 286
Cdd:pfam13437 68 LEGKVVRISPTVDPDTGVIPVRVSIENPKTPipLLPG 104
|
|
| PRK10559 |
PRK10559 |
p-hydroxybenzoic acid efflux pump subunit AaeA; |
60-178 |
1.24e-03 |
|
p-hydroxybenzoic acid efflux pump subunit AaeA;
Pssm-ID: 182548 [Multi-domain] Cd Length: 310 Bit Score: 40.49 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 447004728 60 EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASlLKTNYVSRQDY 139
Cdd:PRK10559 46 DVVAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNR-LGVQAMSREEI 124
|
90 100 110
....*....|....*....|....*....|....*....
gi 447004728 140 DTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITG 178
Cdd:PRK10559 125 DQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADG 163
|
|
| |
