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Conserved domains on  [gi|446960671|ref|WP_001037927|]
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MULTISPECIES: YARHG domain-containing protein [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YARHG super family cl16222
YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is ...
 37-84 7.00e-05

YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is named YARHG after a conserved motif in the sequence. This domain is associated with peptidases and bacterial kinase proteins. Its molecular function is unknown.


The actual alignment was detected with superfamily member pfam13308:

Pssm-ID: 433105  Cd Length: 84  Bit Score: 37.74  E-value: 7.00e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446960671  37 NLIYASKGFCFKDQDAKEKYGN------ENCHTTKPKFSDKEQQRLDAIKERQK 84
Cdd:pfam13308 31 NEIYARAGYCFQTPDLKAYFSSkcwykpERSPFDDVVLSEDERKNVDAIKKYEK 84
 
Name Accession Description Interval E-value
YARHG pfam13308
YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is ...
 37-84 7.00e-05

YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is named YARHG after a conserved motif in the sequence. This domain is associated with peptidases and bacterial kinase proteins. Its molecular function is unknown.


Pssm-ID: 433105  Cd Length: 84  Bit Score: 37.74  E-value: 7.00e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446960671  37 NLIYASKGFCFKDQDAKEKYGN------ENCHTTKPKFSDKEQQRLDAIKERQK 84
Cdd:pfam13308 31 NEIYARAGYCFQTPDLKAYFSSkcwykpERSPFDDVVLSEDERKNVDAIKKYEK 84
 
Name Accession Description Interval E-value
YARHG pfam13308
YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is ...
 37-84 7.00e-05

YARHG domain; This presumed extracellular domain is about 70 amino acids in length. It is named YARHG after a conserved motif in the sequence. This domain is associated with peptidases and bacterial kinase proteins. Its molecular function is unknown.


Pssm-ID: 433105  Cd Length: 84  Bit Score: 37.74  E-value: 7.00e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 446960671  37 NLIYASKGFCFKDQDAKEKYGN------ENCHTTKPKFSDKEQQRLDAIKERQK 84
Cdd:pfam13308 31 NEIYARAGYCFQTPDLKAYFSSkcwykpERSPFDDVVLSEDERKNVDAIKKYEK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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