|
Name |
Accession |
Description |
Interval |
E-value |
| Zn_piracy_ZnuD |
NF038289 |
zinc piracy TonB-dependent receptor ZnuD; ZnuD, as described in Acinetobacter baumannii, works ... |
4-803 |
0e+00 |
|
zinc piracy TonB-dependent receptor ZnuD; ZnuD, as described in Acinetobacter baumannii, works with the zinc uptake transporter ZnuABC to overcome sequestration of zinc by the host. ZnuD, TonB-dependent receptor, pirates zinc from the host protein calprotectin. A similar ZnuD family protein, outside the current scope of this model, has been characterized in Neisseria.
Pssm-ID: 468454 [Multi-domain] Cd Length: 684 Bit Score: 764.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 4 KSKLFLALITLGASKILLAAEGPVTTLNTIVLTAQSDELGSellgKSLNVSNQFIDTSKLKQRSTTLGDALGTELGIHSN 83
Cdd:NF038289 4 KNLLTLSILAVISPSVFAQENEPVQQLETIQIQAHPLVQTA----ADFAVADHVVDQKQLSQGATTIGDALADELGVYSN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 84 QYGGGASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDYKIPTQ 163
Cdd:NF038289 80 QFGAGSSRPVIRGQDGARVKVLQNASETMDVSTLSPDHAVTVDPILAKQVEVIRGPSTLLYGAGTVGGLVNVTDSKIPTQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 164 MPQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSYNSLEdlenqnsiyknlKYLPE 243
Cdd:NF038289 160 MPEKGYEGQVGLRYNTGSDEKLASAGVTVGLGDQVALRVEGLKRDANDYIAPDYLHEGEFTKE------------RRVDN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 244 SWAESRVGTLGLSWIDDNTYLGVSYTHRHDEYGLPAHSHLYEGCGAsaigidsriSGLKnylLYYPQLMDEQDinyinpr 323
Cdd:NF038289 228 TFAESQTVNVGLSWIYDRGFTGISYSNRQDQYGLPGHSHEYESCHP---------HGPH---LHCGSHDHGDD------- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 324 PDCHQHNHIHEtnfsHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKNTGKVGRIELSH 403
Cdd:NF038289 289 EGHHHHDHEHD----HAGPWIDLKSERYDFRTELNDPFAGFKKLRAQASYTDYQHDEIEEDEIATTFKSKGYDGRLELVH 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 404 QPLGELTGILGLQYLEQDnsalspvhsqeghttyLD---NQQLLNRNVTKNFSVFGLEKYNWNDFTFELGARIEKQKVSM 480
Cdd:NF038289 365 NPIAGWEGVIGTQYSQQK----------------LNltgEEAFMAPNTTKKWSLFALEHKQWNDVHVELAARVDQQKIDI 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 481 DYDIEKIKDsmkpwpnkynspyveknnkiraqnlksileavqpnkeTAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQE 560
Cdd:NF038289 429 DSTQKDYDG-------------------------------------TAFSYSGAANWEFAPNYKLSLVASHQERLPLAQE 471
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 561 MYTHGMHLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLnevlgttkvrDQ-HTLRINHY 639
Cdd:NF038289 472 LYADGKHFATNTYELGNDNLDKEKSNNLELGLHYDNDKLDYHVHVYHNWFDDYIYAQTL----------DRyEDFRLVQY 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 640 SQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNlpdaviaydiwnreptlapqkdRYTPRLPPARLGTRLKADFDE 719
Cdd:NF038289 542 TQDKARFYGAEAEAGYQISPRYKLSVFGDYVRGKIDN----------------------ENAPRVPAGRLGTKVNADFGD 599
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 720 SLKGEIEYYRVFKQDNISKFEQVTSGYNMLNMTLAYKNKLSH-TEYDLFFKANNLLDQKVYAHETFLPYIPQIGRNFSLG 798
Cdd:NF038289 600 GWSGSAEYYHVFNQDKIAAYETETQGYNMLNLGLAYAGQYSNkTDYRVYFKANNLLDDQVYQHASFLSNIPQVGRNFTVG 679
|
....*
gi 446855697 799 LNLNF 803
Cdd:NF038289 680 VDFSF 684
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
30-787 |
1.24e-53 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 196.97 E-value: 1.24e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 30 LNTIVLTAQsdelGSELLGKSLNVSNQFIDTSKLKQR-STTLGDALGTELGIHSNQYGGGASTPIIRGQEGK--RIKVLQ 106
Cdd:COG1629 1 LEEVVVTAT----RTDESLQDVPGSVSVISREQLEDQpATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGgnRVLVLV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 107 NNADVLDMSNMSPDhAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGntTLRFNTGSNEKLT 186
Cdd:COG1629 77 DGVPLNDPSGGDGG-LSYIDPEDIERVEVLRGPSSALYGSGALGGVINIV-----TKKPKDGKGG--EVSASYGSYGTYR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 187 TAGVTVGLSPHVALRAEGLYRNAGNYKTPhyqsssynslEDLENQNsiyknlkylpeswaesrvGTLGLSW-IDDNTYLG 265
Cdd:COG1629 149 ASLSLSGGNGKLAYRLSASYRDSDGYRDN----------SDSDRYN------------------LRAKLGYqLGDDTRLT 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 266 VSYTHRHDEYGLPahshlyegcgasaigidsrisGLKNYLLYYPQLMDEQDINYINPRpdchqhnhihetnfshnapYID 345
Cdd:COG1629 201 LSASYSDSDQDSP---------------------GYLTLAALRPRGAMDDGTNPYSND-------------------TDD 240
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 346 LNTRRYDVRGEFTqPFTGIDKIRTSLSYIDYFHN---------ELEGDKITNFFKNTGKVGRIELSHQP--LGELTGILG 414
Cdd:COG1629 241 NTRDRYSLSLEYE-HLGDGLKLSASAYYRYDDTDldsdftptpADGGTLEQTDFDNRTYGLELRLTYDLgfGGKHTLLVG 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 415 LQYLEQDNSALSPVHSQEGHTTYLDNQQLLNRNVTKNFSVFGLEKYNWND-FTFELGARIEKQKVSMDYDIekikdsmkp 493
Cdd:COG1629 320 LDYQRQDLDGSGYPLDLGSGSLPTLTSGADDDGTTTSLALYAQDTYKLTDkLTLTAGLRYDYVSYDVDDTV--------- 390
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 494 wpNKYNSPYVEKNnkiraqnlksileavqpnkETAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGmhlaTNSF 573
Cdd:COG1629 391 --TGTDSASGSRS-------------------YSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANG----TDPY 445
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 574 EIGNRFLRKEKSNNLEISLAYK--DDLLDYQISTYYYDFDNYIYLQTLNEVLGTTkvrdqhTLRINhysQSAANFYGLEG 651
Cdd:COG1629 446 SVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFS------TYYTN---AGKARSYGVEL 516
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 652 NIGYQFNSVYHGSLFGDYVKGRLTNLPDAVIAYDiwnreptlapqkDRYTPRLPPARLGTRLKADFDESLKGEIEYYRVF 731
Cdd:COG1629 517 ELSYQLTPGLSLNASYSYTDAKFDDDTDGSADLD------------GNRLPGVPPLTANLGLTYEFPGGWSLGLGVRYVG 584
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 446855697 732 KQ--DNISKfEQVTSGYNMLNMTLAYKNKLSHTeydLFFKANNLLDQKVYAHETFLPY 787
Cdd:COG1629 585 DRylDDANT-QGAPGGYTLVDLGAGYRFGDNLT---LSLGVDNLFDKKYATSLSVRAS 638
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
64-803 |
9.89e-33 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 134.89 E-value: 9.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 64 KQRSTTLGDALGTELGIH-SNQYGGGASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTL 142
Cdd:cd01347 12 KQPATSLADLLRRIPGVSvTRGGGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIERVEVLKGPSSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 143 LYSSNSAAGVVNVIdykipTQMPQDGLEGNTTLRfnTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSY 222
Cdd:cd01347 92 LYGSGAIGGVVNII-----TKRPTDEFGGSVTAG--YGSDNSGSSGGGGFDVSGALADDGAFGARLYGAYRDGDGTIDGD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 223 NSLEDLENqnsiyknlkylpeswaESRVGTLGLSW-IDDNTYLGVSYTHRHDEYGlPAHSHLYEGCGASAIGIDSRISGL 301
Cdd:cd01347 165 GQADDSDE----------------ERYNVAGKLDWrPDDDTRLTLDAGYQDQDAD-GPGGTLPANGTGSSLGGGPSSNTN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 302 KNYLLYYPQLMDEQDINYINprpdcHQHNHIHETnFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYiDYFHNEL 381
Cdd:cd01347 228 GDRDWDYRDRYRKRASLGLE-----HDLNDTGWT-LRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSS-ERDTTQL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 382 EGDKitnffKNTGKVGRIELSHQPLgeltgiLGLQYLEQDNSalspvhsqeghttyldnqqllnrnvTKNFSVFGLEKYN 461
Cdd:cd01347 301 GFDA-----GLNAPFGTGPVAHTLT------LGVEYRREELD-------------------------EKQTALYAQDTIE 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 462 WND-FTFELGARIEKQKVSMDYDIEKIKDSMKpwpnkynspyveknnkiraqnlksileavqpnKETAFSYAGTVHWRFA 540
Cdd:cd01347 345 LTDdLTLTLGLRYDHYDQDSKDTIAGGTTAKK--------------------------------SYSHWSPSLGLVYKLT 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 541 PNYILSLTGTHQERLPNAQEMYTHGMHLATNSfeIGNRFLRKEKSNNLEISLAYK-DDLLDYQISTYYYDFDNYIYLQTL 619
Cdd:cd01347 393 DGLSLYASYSQGFRAPSLGELYGGGSHGGTAA--VGNPNLKPEKSKQYELGLKYDpGDGLTLSAALFRIDIKNEIVSTPT 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 620 NEVLGTTKVrdqhtlrinhYSQSA-ANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNLPDAviayDIWNREPTLAPQKD 698
Cdd:cd01347 471 NTGLGLVTV----------YVNGGkARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGA----TTGNRLPGIPKHTA 536
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 699 RYTPR--LPPARLGTRLKADFDESlkgeieYYRVFKQDNISKFeqvTSGYNMLNMTLAYK-NKlshtEYDLFFKANNLLD 775
Cdd:cd01347 537 NLGLDyeLPDEGLTAGGGVRYRGK------QYADTANGNNTVK---VPGYTLVDLSASYQfTK----NLTLRLGVNNLFD 603
|
730 740 750
....*....|....*....|....*....|..
gi 446855697 776 QKVYAHETFLPYIPQI----GRNFSLGLNLNF 803
Cdd:cd01347 604 KDYYTSLSVRGSGLYGyygpGRTYYLSVSYKF 635
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
303-802 |
1.50e-19 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 92.53 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 303 NYLLYYPQLMDEQDINYINPRPDCHQHNHIHETNFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELE 382
Cdd:pfam00593 33 TLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDR 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 383 GDKITNFFKNTGkvGRIELSHQP-LGELTGILGLQYLEQDNSALSPVhsqeghTTYLDNQQLLNRNVTKNFSVFGLEKYN 461
Cdd:pfam00593 113 LYGLYGLDGDLE--LSLDLSHDLlLGVELRTAGLDYRRLDDDAYDPY------DPANPSSSSYSDTTTDSYGLYLQDNIK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 462 WND-FTFELGARIEKQKVSMDYDIEKIKDSmkpwpnkynspyveknnkiraqnlksileavqPNKETAFSYAGTVHWRFA 540
Cdd:pfam00593 185 LTDrLTLTLGLRYDHYSTDGDDGNGGGDNF--------------------------------SRSYSAFSPRLGLVYKPT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 541 PNYILSLTGTHQERLPNAQEMYTHGMHLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLN 620
Cdd:pfam00593 233 DNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 621 EVLGTTKVRdqhtlrinHYSQSAANFYGLEGNIGYQ-FNSVYHGSLFGdYVKGRLTNLPDAviaydiwnreptlapqKDR 699
Cdd:pfam00593 313 PGLGGTVYT--------YTNVGKARIRGVELELSGRlWGLGLSGGGYT-YTDADDDADADD----------------TGN 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 700 YTPRLPP--ARLGTRLKADfDESLKGEIEYYRVFKQDNISKFEQVT---SGYNMLNMTLAYKNKlshTEYDLFFKANNLL 774
Cdd:pfam00593 368 PLPNVPRhtANLGLTYDFP-LGGWGARLGARYVGSGERRYGDAANTfktPGYTLVDLSAGYRLN---KNLTLRLGVNNLF 443
|
490 500 510
....*....|....*....|....*....|..
gi 446855697 775 DQK----VYAHETFLPYIPQIGRNFSLGLNLN 802
Cdd:pfam00593 444 DKYykryYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
30-803 |
1.21e-18 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 90.53 E-value: 1.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 30 LNTIVLTA-QSDELGSELLGKSLNVSNQFIDtsklKQRSTTLGDALGTELGIhSNQYGG--GASTPIIRGQEGKRIKVLQ 106
Cdd:TIGR01785 1 LDTVTVTAtRTRQVLSEAPASVSVISGEQIE----SKQANNLADALNTVPGV-DVTGGGrpPGQSINIRGLQDNRVLVVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 107 NNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGN------TTLRFNTG 180
Cdd:TIGR01785 76 DGARQNYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFR-----TKDAADLLRPGqlfgglAKLSYGSN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 181 SNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTphyqsssyNSLEDLENQNSIYKNLKylpeswaesrvGTLGlSWIDD 260
Cdd:TIGR01785 151 NNSFGGSVAVAGRLDDNLDALVAATYRDGGNYRN--------GNKEEATNSAYVQKNLL-----------AKLG-WQLDD 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 261 NTYLGVSYthRHDEYGLPAhshlyegcGASAIGIDSRISGLKNYLLYYPQLMDEQDINYINPRPDchqhnhihetnfshn 340
Cdd:TIGR01785 211 AQRLEFSY--FTTEGSLDE--------AQNSGPGTEYVLGSSSTLLASSTRDRSATLTYNWTPED--------------- 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 341 APYIDLNTRRYDVRGEFTQPFTGiDKIRTSLSYIDYfhneLEGDKITNffkntgkvgRIELSHQPLGELTgiLGLQYLEQ 420
Cdd:TIGR01785 266 NPWLDATASLYYNRTENDNDRSA-RGVGREEGYQYT----TYGATLQN---------TSRFDVASWSTLT--YGVDWMKD 329
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 421 DNSALSpvHSQEGHTTYLDNQQLLNRNvtkNFSVFGLEKYNWNDFTFEL--GARIEKQKVSmdydiekikdsmkPWPNKY 498
Cdd:TIGR01785 330 KRRTES--FDPNSVTTIVPNPPSAKEY---FFGLFLQDNIPLLDDRLTLsaGLRYDHYKLS-------------PKTTAD 391
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 499 NSPYVEKNNkiraqnlksileavqpnketAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGMHLATNSFE--IG 576
Cdd:TIGR01785 392 TEAVDRSYS--------------------RWSPSLGLSYKPVDWLTLYASYSQGFRAPSIDELYGTGDHPGTPGGYtfAP 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 577 NRFLRKEKSNNLEI-------SLAYKDDLLDYQISTYYYDFDNYIYLqtlnevlgTTKVRDQHTLRINHYSQ----SAAN 645
Cdd:TIGR01785 452 NPNLKPETSKTWELganlsfdNLLLDNDQLQFKVAYFYNDVKDFIDL--------TIGVTDNVTAGMNNITQyvniDGAR 523
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 646 FYGLEGNIGYQFNSVYhGSLFGDYVKGRLTNlpdaviaydiwnreptlapqKDRYTPRLPPARLGTRLKADF-DESLKGE 724
Cdd:TIGR01785 524 IRGIEASASYDAGLWA-TGLSYGYTIGKDQN--------------------TNQWLSNIPPLKLVVTVGYRFpDRRLDLG 582
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 725 IEYYRVFKQDNISKFEQV-------TSGYNMLNMTLAYK-NKLSHTEYDlfFKANNLLDQKVYahETFLPYIPQIGRNFS 796
Cdd:TIGR01785 583 AKAAYYERQSESPTTEDVaanglltTPGYTVVDLYATYQpNAVKGLTVR--FGVNNLTDRKYT--PAQSVPGAGPGRNFK 658
|
....*..
gi 446855697 797 LGLNLNF 803
Cdd:TIGR01785 659 GSVKYQF 665
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
9-181 |
1.05e-07 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 55.55 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 9 LALITLGASKILLAAEGPVTTLNTIVLTAQsdelGSELLGKSLNVSNQFIDTSKLKQRS-TTLGDALGTELGIhsNQYGG 87
Cdd:PRK13483 12 LCLLPAVFVTHALAQAAPDKTMETVVVTAS----GYEQQIRDAPASISVITREDLENRFyRDLTDALLDVPGV--VVTGG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 88 GASTPI-IRGQ---------EGKRikvlQNNADVLDMSNmSPDHAVTVEPSLA--KSIEIIRGASTLLYSSNSAAGVVNV 155
Cdd:PRK13483 86 GDRTDIsLRGMgsqytlilvDGKR----QSSRETRPNSD-GPGVEQAWTPPLAaiERIEVIRGPMSSLYGSDAIGGVINI 160
|
170 180
....*....|....*....|....*.
gi 446855697 156 IDYKIPTQMpQDGLEGNTTLRFNTGS 181
Cdd:PRK13483 161 ITRKVPNEW-QGEVRLDTTLQENSDS 185
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Zn_piracy_ZnuD |
NF038289 |
zinc piracy TonB-dependent receptor ZnuD; ZnuD, as described in Acinetobacter baumannii, works ... |
4-803 |
0e+00 |
|
zinc piracy TonB-dependent receptor ZnuD; ZnuD, as described in Acinetobacter baumannii, works with the zinc uptake transporter ZnuABC to overcome sequestration of zinc by the host. ZnuD, TonB-dependent receptor, pirates zinc from the host protein calprotectin. A similar ZnuD family protein, outside the current scope of this model, has been characterized in Neisseria.
Pssm-ID: 468454 [Multi-domain] Cd Length: 684 Bit Score: 764.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 4 KSKLFLALITLGASKILLAAEGPVTTLNTIVLTAQSDELGSellgKSLNVSNQFIDTSKLKQRSTTLGDALGTELGIHSN 83
Cdd:NF038289 4 KNLLTLSILAVISPSVFAQENEPVQQLETIQIQAHPLVQTA----ADFAVADHVVDQKQLSQGATTIGDALADELGVYSN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 84 QYGGGASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDYKIPTQ 163
Cdd:NF038289 80 QFGAGSSRPVIRGQDGARVKVLQNASETMDVSTLSPDHAVTVDPILAKQVEVIRGPSTLLYGAGTVGGLVNVTDSKIPTQ 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 164 MPQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSYNSLEdlenqnsiyknlKYLPE 243
Cdd:NF038289 160 MPEKGYEGQVGLRYNTGSDEKLASAGVTVGLGDQVALRVEGLKRDANDYIAPDYLHEGEFTKE------------RRVDN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 244 SWAESRVGTLGLSWIDDNTYLGVSYTHRHDEYGLPAHSHLYEGCGAsaigidsriSGLKnylLYYPQLMDEQDinyinpr 323
Cdd:NF038289 228 TFAESQTVNVGLSWIYDRGFTGISYSNRQDQYGLPGHSHEYESCHP---------HGPH---LHCGSHDHGDD------- 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 324 PDCHQHNHIHEtnfsHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKNTGKVGRIELSH 403
Cdd:NF038289 289 EGHHHHDHEHD----HAGPWIDLKSERYDFRTELNDPFAGFKKLRAQASYTDYQHDEIEEDEIATTFKSKGYDGRLELVH 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 404 QPLGELTGILGLQYLEQDnsalspvhsqeghttyLD---NQQLLNRNVTKNFSVFGLEKYNWNDFTFELGARIEKQKVSM 480
Cdd:NF038289 365 NPIAGWEGVIGTQYSQQK----------------LNltgEEAFMAPNTTKKWSLFALEHKQWNDVHVELAARVDQQKIDI 428
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 481 DYDIEKIKDsmkpwpnkynspyveknnkiraqnlksileavqpnkeTAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQE 560
Cdd:NF038289 429 DSTQKDYDG-------------------------------------TAFSYSGAANWEFAPNYKLSLVASHQERLPLAQE 471
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 561 MYTHGMHLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLnevlgttkvrDQ-HTLRINHY 639
Cdd:NF038289 472 LYADGKHFATNTYELGNDNLDKEKSNNLELGLHYDNDKLDYHVHVYHNWFDDYIYAQTL----------DRyEDFRLVQY 541
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 640 SQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNlpdaviaydiwnreptlapqkdRYTPRLPPARLGTRLKADFDE 719
Cdd:NF038289 542 TQDKARFYGAEAEAGYQISPRYKLSVFGDYVRGKIDN----------------------ENAPRVPAGRLGTKVNADFGD 599
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 720 SLKGEIEYYRVFKQDNISKFEQVTSGYNMLNMTLAYKNKLSH-TEYDLFFKANNLLDQKVYAHETFLPYIPQIGRNFSLG 798
Cdd:NF038289 600 GWSGSAEYYHVFNQDKIAAYETETQGYNMLNLGLAYAGQYSNkTDYRVYFKANNLLDDQVYQHASFLSNIPQVGRNFTVG 679
|
....*
gi 446855697 799 LNLNF 803
Cdd:NF038289 680 VDFSF 684
|
|
| CirA |
COG1629 |
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism]; |
30-787 |
1.24e-53 |
|
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
Pssm-ID: 441236 [Multi-domain] Cd Length: 644 Bit Score: 196.97 E-value: 1.24e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 30 LNTIVLTAQsdelGSELLGKSLNVSNQFIDTSKLKQR-STTLGDALGTELGIHSNQYGGGASTPIIRGQEGK--RIKVLQ 106
Cdd:COG1629 1 LEEVVVTAT----RTDESLQDVPGSVSVISREQLEDQpATDLGDLLRRVPGVSVTSAGGGAGQISIRGFGGGgnRVLVLV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 107 NNADVLDMSNMSPDhAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGntTLRFNTGSNEKLT 186
Cdd:COG1629 77 DGVPLNDPSGGDGG-LSYIDPEDIERVEVLRGPSSALYGSGALGGVINIV-----TKKPKDGKGG--EVSASYGSYGTYR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 187 TAGVTVGLSPHVALRAEGLYRNAGNYKTPhyqsssynslEDLENQNsiyknlkylpeswaesrvGTLGLSW-IDDNTYLG 265
Cdd:COG1629 149 ASLSLSGGNGKLAYRLSASYRDSDGYRDN----------SDSDRYN------------------LRAKLGYqLGDDTRLT 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 266 VSYTHRHDEYGLPahshlyegcgasaigidsrisGLKNYLLYYPQLMDEQDINYINPRpdchqhnhihetnfshnapYID 345
Cdd:COG1629 201 LSASYSDSDQDSP---------------------GYLTLAALRPRGAMDDGTNPYSND-------------------TDD 240
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 346 LNTRRYDVRGEFTqPFTGIDKIRTSLSYIDYFHN---------ELEGDKITNFFKNTGKVGRIELSHQP--LGELTGILG 414
Cdd:COG1629 241 NTRDRYSLSLEYE-HLGDGLKLSASAYYRYDDTDldsdftptpADGGTLEQTDFDNRTYGLELRLTYDLgfGGKHTLLVG 319
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 415 LQYLEQDNSALSPVHSQEGHTTYLDNQQLLNRNVTKNFSVFGLEKYNWND-FTFELGARIEKQKVSMDYDIekikdsmkp 493
Cdd:COG1629 320 LDYQRQDLDGSGYPLDLGSGSLPTLTSGADDDGTTTSLALYAQDTYKLTDkLTLTAGLRYDYVSYDVDDTV--------- 390
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 494 wpNKYNSPYVEKNnkiraqnlksileavqpnkETAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGmhlaTNSF 573
Cdd:COG1629 391 --TGTDSASGSRS-------------------YSAFSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYANG----TDPY 445
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 574 EIGNRFLRKEKSNNLEISLAYK--DDLLDYQISTYYYDFDNYIYLQTLNEVLGTTkvrdqhTLRINhysQSAANFYGLEG 651
Cdd:COG1629 446 SVGNPDLKPETSTNYELGLRYRllDGRLSLSLALFYSDVDNEILSVPLPNDSGFS------TYYTN---AGKARSYGVEL 516
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 652 NIGYQFNSVYHGSLFGDYVKGRLTNLPDAVIAYDiwnreptlapqkDRYTPRLPPARLGTRLKADFDESLKGEIEYYRVF 731
Cdd:COG1629 517 ELSYQLTPGLSLNASYSYTDAKFDDDTDGSADLD------------GNRLPGVPPLTANLGLTYEFPGGWSLGLGVRYVG 584
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 446855697 732 KQ--DNISKfEQVTSGYNMLNMTLAYKNKLSHTeydLFFKANNLLDQKVYAHETFLPY 787
Cdd:COG1629 585 DRylDDANT-QGAPGGYTLVDLGAGYRFGDNLT---LSLGVDNLFDKKYATSLSVRAS 638
|
|
| ligand_gated_channel |
cd01347 |
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ... |
64-803 |
9.89e-33 |
|
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Pssm-ID: 238657 [Multi-domain] Cd Length: 635 Bit Score: 134.89 E-value: 9.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 64 KQRSTTLGDALGTELGIH-SNQYGGGASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTL 142
Cdd:cd01347 12 KQPATSLADLLRRIPGVSvTRGGGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRGVDLNTIPPELIERVEVLKGPSSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 143 LYSSNSAAGVVNVIdykipTQMPQDGLEGNTTLRfnTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSY 222
Cdd:cd01347 92 LYGSGAIGGVVNII-----TKRPTDEFGGSVTAG--YGSDNSGSSGGGGFDVSGALADDGAFGARLYGAYRDGDGTIDGD 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 223 NSLEDLENqnsiyknlkylpeswaESRVGTLGLSW-IDDNTYLGVSYTHRHDEYGlPAHSHLYEGCGASAIGIDSRISGL 301
Cdd:cd01347 165 GQADDSDE----------------ERYNVAGKLDWrPDDDTRLTLDAGYQDQDAD-GPGGTLPANGTGSSLGGGPSSNTN 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 302 KNYLLYYPQLMDEQDINYINprpdcHQHNHIHETnFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYiDYFHNEL 381
Cdd:cd01347 228 GDRDWDYRDRYRKRASLGLE-----HDLNDTGWT-LRANLSYSYTDNDGDPLILNGGNNAAGGDLGRSGYSS-ERDTTQL 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 382 EGDKitnffKNTGKVGRIELSHQPLgeltgiLGLQYLEQDNSalspvhsqeghttyldnqqllnrnvTKNFSVFGLEKYN 461
Cdd:cd01347 301 GFDA-----GLNAPFGTGPVAHTLT------LGVEYRREELD-------------------------EKQTALYAQDTIE 344
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 462 WND-FTFELGARIEKQKVSMDYDIEKIKDSMKpwpnkynspyveknnkiraqnlksileavqpnKETAFSYAGTVHWRFA 540
Cdd:cd01347 345 LTDdLTLTLGLRYDHYDQDSKDTIAGGTTAKK--------------------------------SYSHWSPSLGLVYKLT 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 541 PNYILSLTGTHQERLPNAQEMYTHGMHLATNSfeIGNRFLRKEKSNNLEISLAYK-DDLLDYQISTYYYDFDNYIYLQTL 619
Cdd:cd01347 393 DGLSLYASYSQGFRAPSLGELYGGGSHGGTAA--VGNPNLKPEKSKQYELGLKYDpGDGLTLSAALFRIDIKNEIVSTPT 470
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 620 NEVLGTTKVrdqhtlrinhYSQSA-ANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTNLPDAviayDIWNREPTLAPQKD 698
Cdd:cd01347 471 NTGLGLVTV----------YVNGGkARIRGVELEASYDLTDGLGLTGSYTYTDTEVKRTDGA----TTGNRLPGIPKHTA 536
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 699 RYTPR--LPPARLGTRLKADFDESlkgeieYYRVFKQDNISKFeqvTSGYNMLNMTLAYK-NKlshtEYDLFFKANNLLD 775
Cdd:cd01347 537 NLGLDyeLPDEGLTAGGGVRYRGK------QYADTANGNNTVK---VPGYTLVDLSASYQfTK----NLTLRLGVNNLFD 603
|
730 740 750
....*....|....*....|....*....|..
gi 446855697 776 QKVYAHETFLPYIPQI----GRNFSLGLNLNF 803
Cdd:cd01347 604 KDYYTSLSVRGSGLYGyygpGRTYYLSVSYKF 635
|
|
| FepA |
COG4771 |
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ... |
8-676 |
4.44e-31 |
|
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];
Pssm-ID: 443803 [Multi-domain] Cd Length: 612 Bit Score: 129.59 E-value: 4.44e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 8 FLALITLGASKILLAAEgPVTTLNTIVLTAQ-SDELGSELLGKSLNVSNQFIDtsklKQRSTTLGDALGTELGIHSNQYG 86
Cdd:COG4771 6 LLLLLALAAQAADALAE-DATELEEVVVTATrTEQSLSDAPASVSVITAEEIE----KLGATDLADALRLLPGVSVTRSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 87 G--GASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQM 164
Cdd:COG4771 81 GrgGSSGISIRGLGGDRVLVLIDGVPVNNPALGGGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINII-----TKK 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 165 PQDGLEGNTTLRFNTGSNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSYNSleDLENQNsiyknlkylpes 244
Cdd:COG4771 156 PTDELEGSVSLGYGSNGNGTYSGSLSLGGPGDKLSFLLSGSYRDRDGYLDYRNGGFVGNS--GYERYN------------ 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 245 waesrvGTLGLSW-IDDNT--YLGVSYTHRHDEYGLPAHSHLYegcgasaigidsrisglknyllyypqlmdeqdinyin 321
Cdd:COG4771 222 ------LNAKLGYrLSDNHrlSLSGGYSRQDRDGGPPTLGDTE------------------------------------- 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 322 prpdchqhnhihetNFSHNAPYIDLNTRRYDVRGEFTQPFTgiDKIRTSLSYIDYFHNELEGDKITNF-----FKNTGKV 396
Cdd:COG4771 259 --------------ISSDNAGDRDTTTDRGNYSLRYNGDLG--DNLDLSLYYSRTDRDSTNGSLGGSTgsfsdSDDTTYG 322
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 397 GRIELSHQPLGELTGILGLQYLEQDNSALSPVHSQEGHTTyldnqqllnrnvtkNFSVFGLEKYNWND-FTFELGARIEK 475
Cdd:COG4771 323 LELDLTYPLGGNHTLTLGAEYRYDDLDSSSFLGGADASRD--------------TYGLFAQDEWKLTDkLTLTAGLRYDY 388
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 476 QKVSmdydiekikdsmkpwpnkynspyveknnkiraqnlksileavQPNKETAFSYAGTVHWRFAPNYILSLTGTHQERL 555
Cdd:COG4771 389 YSTF------------------------------------------GASNYTAFSPRLGLRYDLSDNLTLRASYGRGFRA 426
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 556 PNAQEMYTHGMHLATNSFeIGNRFLRKEKSNNLEISLAYK--DDLLDYQISTYYYDFDNYIYLQTLNEVLGTTkvrdqhT 633
Cdd:COG4771 427 PSLAELYGSGTGTPGRYV-LGNPDLKPETSDNYELGLEYRlgNGGLSLSLTGFYTDIKDLIVLVPVGPGPGDV------L 499
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 446855697 634 LRINhysQSAANFYGLEGNIGYQFNSVYHGSLFGDYVKGRLTN 676
Cdd:COG4771 500 QYEN---VGKARTYGLELELKYRLGKGLTLTASYTYLDSKIDD 539
|
|
| TonB_dep_Rec |
pfam00593 |
TonB dependent receptor; This model now only covers the conserved part of the barrel structure. |
303-802 |
1.50e-19 |
|
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
Pssm-ID: 395474 [Multi-domain] Cd Length: 475 Bit Score: 92.53 E-value: 1.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 303 NYLLYYPQLMDEQDINYINPRPDCHQHNHIHETNFSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHNELE 382
Cdd:pfam00593 33 TLDGYGNDGGYLGDRPLYYGRDYSDTDRKRLSLGYDYDLGDGLSWLSTLRLGLRYSSLDGDYTSNSSGLSGAGDYLSDDR 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 383 GDKITNFFKNTGkvGRIELSHQP-LGELTGILGLQYLEQDNSALSPVhsqeghTTYLDNQQLLNRNVTKNFSVFGLEKYN 461
Cdd:pfam00593 113 LYGLYGLDGDLE--LSLDLSHDLlLGVELRTAGLDYRRLDDDAYDPY------DPANPSSSSYSDTTTDSYGLYLQDNIK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 462 WND-FTFELGARIEKQKVSMDYDIEKIKDSmkpwpnkynspyveknnkiraqnlksileavqPNKETAFSYAGTVHWRFA 540
Cdd:pfam00593 185 LTDrLTLTLGLRYDHYSTDGDDGNGGGDNF--------------------------------SRSYSAFSPRLGLVYKPT 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 541 PNYILSLTGTHQERLPNAQEMYTHGMHLATNSFEIGNRFLRKEKSNNLEISLAYKDDLLDYQISTYYYDFDNYIYLQTLN 620
Cdd:pfam00593 233 DNLSLYASYSRGFRAPSLGELYGSGSGGGGGAVAGGNPDLKPETSDNYELGLKYDDGRLSLSLALFYIDIKNLITSDPDG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 621 EVLGTTKVRdqhtlrinHYSQSAANFYGLEGNIGYQ-FNSVYHGSLFGdYVKGRLTNLPDAviaydiwnreptlapqKDR 699
Cdd:pfam00593 313 PGLGGTVYT--------YTNVGKARIRGVELELSGRlWGLGLSGGGYT-YTDADDDADADD----------------TGN 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 700 YTPRLPP--ARLGTRLKADfDESLKGEIEYYRVFKQDNISKFEQVT---SGYNMLNMTLAYKNKlshTEYDLFFKANNLL 774
Cdd:pfam00593 368 PLPNVPRhtANLGLTYDFP-LGGWGARLGARYVGSGERRYGDAANTfktPGYTLVDLSAGYRLN---KNLTLRLGVNNLF 443
|
490 500 510
....*....|....*....|....*....|..
gi 446855697 775 DQK----VYAHETFLPYIPQIGRNFSLGLNLN 802
Cdd:pfam00593 444 DKYykryYSSGGGNLGGYPGPGRTFYLGLSYK 475
|
|
| BtuB |
COG4206 |
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism]; |
33-275 |
1.69e-19 |
|
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
Pssm-ID: 443355 [Multi-domain] Cd Length: 276 Bit Score: 89.55 E-value: 1.69e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 33 IVLTAQsdelGSELLGKSLNVSNQFIDTSKLKQR-STTLGDALGTELGIHSNQYG--GGASTPIIRGQEGKRIKVLQNNA 109
Cdd:COG4206 1 VVVTAT----RLEQSKSDLTGSVTVIDAEELERSgATSLADALRRVPGVQVSSSGgpGSAASISIRGLGSNQTLVLIDGV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 110 DVLDMSNMSPDHAvTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGntTLRFNTGSNEKLTTAG 189
Cdd:COG4206 77 PLNDPSLGGVDLS-LIPPDDIERIEVLKGAASALYGSDAIGGVINIT-----TKKGKKGFKG--SVSASYGSFGTRRLSA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 190 VTVGLSPHVALRAEGLYRNAGNYKTPHYQSSSYNSLEdlenQNSIYKNLKYLPE---------SWAESRVGTLGLSWIDD 260
Cdd:COG4206 149 SLSGGAGKFSYSLSASYRRSDGYRYNDPDLRNNDGYE----NTSLNARLGYKLGdngslslsgGYSDSERGYPGAVGSDR 224
|
250
....*....|....*
gi 446855697 261 NTYLGVSYTHRHDEY 275
Cdd:COG4206 225 NLRLSLSLEYKLSDG 239
|
|
| TonB-hemin |
TIGR01785 |
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ... |
30-803 |
1.21e-18 |
|
TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273807 [Multi-domain] Cd Length: 665 Bit Score: 90.53 E-value: 1.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 30 LNTIVLTA-QSDELGSELLGKSLNVSNQFIDtsklKQRSTTLGDALGTELGIhSNQYGG--GASTPIIRGQEGKRIKVLQ 106
Cdd:TIGR01785 1 LDTVTVTAtRTRQVLSEAPASVSVISGEQIE----SKQANNLADALNTVPGV-DVTGGGrpPGQSINIRGLQDNRVLVVV 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 107 NNADVLDMSNMSPDHAVTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGN------TTLRFNTG 180
Cdd:TIGR01785 76 DGARQNYQRGGAHNGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFR-----TKDAADLLRPGqlfgglAKLSYGSN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 181 SNEKLTTAGVTVGLSPHVALRAEGLYRNAGNYKTphyqsssyNSLEDLENQNSIYKNLKylpeswaesrvGTLGlSWIDD 260
Cdd:TIGR01785 151 NNSFGGSVAVAGRLDDNLDALVAATYRDGGNYRN--------GNKEEATNSAYVQKNLL-----------AKLG-WQLDD 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 261 NTYLGVSYthRHDEYGLPAhshlyegcGASAIGIDSRISGLKNYLLYYPQLMDEQDINYINPRPDchqhnhihetnfshn 340
Cdd:TIGR01785 211 AQRLEFSY--FTTEGSLDE--------AQNSGPGTEYVLGSSSTLLASSTRDRSATLTYNWTPED--------------- 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 341 APYIDLNTRRYDVRGEFTQPFTGiDKIRTSLSYIDYfhneLEGDKITNffkntgkvgRIELSHQPLGELTgiLGLQYLEQ 420
Cdd:TIGR01785 266 NPWLDATASLYYNRTENDNDRSA-RGVGREEGYQYT----TYGATLQN---------TSRFDVASWSTLT--YGVDWMKD 329
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 421 DNSALSpvHSQEGHTTYLDNQQLLNRNvtkNFSVFGLEKYNWNDFTFEL--GARIEKQKVSmdydiekikdsmkPWPNKY 498
Cdd:TIGR01785 330 KRRTES--FDPNSVTTIVPNPPSAKEY---FFGLFLQDNIPLLDDRLTLsaGLRYDHYKLS-------------PKTTAD 391
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 499 NSPYVEKNNkiraqnlksileavqpnketAFSYAGTVHWRFAPNYILSLTGTHQERLPNAQEMYTHGMHLATNSFE--IG 576
Cdd:TIGR01785 392 TEAVDRSYS--------------------RWSPSLGLSYKPVDWLTLYASYSQGFRAPSIDELYGTGDHPGTPGGYtfAP 451
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 577 NRFLRKEKSNNLEI-------SLAYKDDLLDYQISTYYYDFDNYIYLqtlnevlgTTKVRDQHTLRINHYSQ----SAAN 645
Cdd:TIGR01785 452 NPNLKPETSKTWELganlsfdNLLLDNDQLQFKVAYFYNDVKDFIDL--------TIGVTDNVTAGMNNITQyvniDGAR 523
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 646 FYGLEGNIGYQFNSVYhGSLFGDYVKGRLTNlpdaviaydiwnreptlapqKDRYTPRLPPARLGTRLKADF-DESLKGE 724
Cdd:TIGR01785 524 IRGIEASASYDAGLWA-TGLSYGYTIGKDQN--------------------TNQWLSNIPPLKLVVTVGYRFpDRRLDLG 582
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 725 IEYYRVFKQDNISKFEQV-------TSGYNMLNMTLAYK-NKLSHTEYDlfFKANNLLDQKVYahETFLPYIPQIGRNFS 796
Cdd:TIGR01785 583 AKAAYYERQSESPTTEDVaanglltTPGYTVVDLYATYQpNAVKGLTVR--FGVNNLTDRKYT--PAQSVPGAGPGRNFK 658
|
....*..
gi 446855697 797 LGLNLNF 803
Cdd:TIGR01785 659 GSVKYQF 665
|
|
| Plug |
pfam07715 |
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ... |
53-152 |
2.14e-16 |
|
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.
Pssm-ID: 462243 [Multi-domain] Cd Length: 107 Bit Score: 75.38 E-value: 2.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 53 VSNQFIDtsklKQRSTTLGDALGTELGIH-SNQYGGGASTPIIRGQEGKRIKVLQNNADVLDMSNMSPDhAVTVEPSLAK 131
Cdd:pfam07715 12 VTAEDIE----DQGATNLADALRGVPGVSvSSGGGGGGSSISIRGFGSNRVLVLVDGVPLNSGGGGSVD-LNSIDPEDIE 86
|
90 100
....*....|....*....|.
gi 446855697 132 SIEIIRGASTLLYSSNSAAGV 152
Cdd:pfam07715 87 RVEVLKGPASALYGSGAIGGV 107
|
|
| FecA |
COG4772 |
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]; |
11-803 |
1.51e-12 |
|
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
Pssm-ID: 443804 [Multi-domain] Cd Length: 681 Bit Score: 71.11 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 11 LITLGASKILLAAEGPVTTLNTIVLTAQSDELGSEllgKSLNVSNQFIDTSKL-KQRSTTLGDALGTELGIH-SNQYGGG 88
Cdd:COG4772 4 ALAAALLLAAAAAAEAATTLETVVVTGSRAAEARL---KDVPGSVSVVDREELeNQAATSLREVLRRVPGVNvQEEDGFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 89 ASTPI-IRG---QEGKRIKVLQNNADVldmsNMSPDHA----VTVEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdyki 160
Cdd:COG4772 81 LRPNIgIRGlgpRRSRGITLLEDGIPI----APAPYGDpaayYFPDLERMERIEVLRGAAALRYGPQTVGGAINFV---- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 161 pTQMPQDGLEGNTTLRFntGSNEKLTT---AGVTVGlspHVALRAEGLYRNAGNYKtPHyqsSSYNSledlenqNSIYKN 237
Cdd:COG4772 153 -TRTIPTAFGGELRVTG--GSFGYRRThasVGGTVG---NFGYLVEYSRKRGDGFR-DN---SGFDI-------NDFNAK 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 238 LKYlpeswaesrvgtlglsWIDDNTYLGVSYTHRHDEYGLPahshlyegcgasaigidsriSGLknyllyypqlmDEQDI 317
Cdd:COG4772 216 LGY----------------RLSDRQELTLKFQYYDEDANTP--------------------GGL-----------TDAQF 248
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 318 NyINPRpdchqhnhihetnfSHNAPYIDLNTRRYDVRGEFTQPFTGIDKIRTSLSYIDYFHN----------ELEGDKIT 387
Cdd:COG4772 249 D-ADPR--------------QSYRPADQFDTRRTQLSLRYEHQLSDNTTLTTTAYYNDFSRNwyirqntadpNTPGLGLR 313
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 388 NF---FKNTGKVGRIELSHQPLG-ELTGILGLQYLEQDNSALSPVHSQEGHTTYLDNQQlLNRNVTKNFSVFGLEKYNWN 463
Cdd:COG4772 314 GNprgYRSYGIEPRLTHRFELGGvPHTLEVGLRYHREEEDRKQYVNTYGQGRSGAGLRR-DRRFSADALAAYAQNRFELT 392
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 464 D-FTFELGARIEkqKVSMDYDIekikdsmkpWPNKYNSPYVEKNNKIraqnlksileavqpnkeTAFSYAGTVHWRFAPN 542
Cdd:COG4772 393 GrLTLTPGLRYE--HIRRDRTD---------RYSTRTGGDDSGSNSY-----------------SEFLPGLGLLYQLTDN 444
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 543 YILsLTGTHQE-RLPNAQEMYTHGMhlatnsfeiGNRFLRKEKSNNLEISLAYK-DDLLDYQISTYYYDFDNYIylQTLN 620
Cdd:COG4772 445 LQL-YANVSRGfEPPTFGDLAYGNG---------GNPDLKPEKSWNYELGTRGRiGNGLSAEVALFYIDYDNEL--GSCS 512
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 621 EVLGTTKVRdqhtlrinhYSQSAANFYGLEGNIGYQFNSVYHGSLFGD----YVKGRLTNLPDAVIAydiWNREPtlapq 696
Cdd:COG4772 513 AAGGDRSTF---------TNAGETRHQGLELALDYDLLKGGGLGLPLFaaytYTDAEFTSDFGPVFA---GNRLP----- 575
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 697 kdrYTPRLpPARLGTRLKAD-FDESLKGEI--EYYRVFKQDNISKFEQVTSGYNMLNMTLAYK--NKLShteydLFFKAN 771
Cdd:COG4772 576 ---YVPRH-QLTAGLGYEHGgWTANLNGRYvsEQFTDAANTVADGSFGKIPSYTVLDLSASYDfgKNLS-----LFAGVN 646
|
810 820 830
....*....|....*....|....*....|....*..
gi 446855697 772 NLLDQKVYAheTFLP-----YIPQIGRNFSLGLNLNF 803
Cdd:COG4772 647 NLFDKRYIA--SRAPnyaagIRPGPPRTVYAGLRLKF 681
|
|
| Fiu |
COG4774 |
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism]; |
65-279 |
4.41e-12 |
|
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
Pssm-ID: 443806 [Multi-domain] Cd Length: 639 Bit Score: 69.52 E-value: 4.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 65 QRSTTLGDALGTELGIHSNQYGGGAS-TPIIRGQegkrikvlQNNADVL-----DMSNMSPDhAVTVEpslakSIEIIRG 138
Cdd:COG4774 24 QGATSLADALRNVPGVTFGAGEGGNGdSFSIRGF--------SASGDIYvdglrDPGQYRRD-TFNLE-----RVEVLKG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 139 ASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGNTTLRFNTGSNeKLTTAGVTVGLSPHVALRAEGLYRNAGNYktphyq 218
Cdd:COG4774 90 PASVLYGRGSPGGVINLV-----TKRPTDEPFTEVTLTYGSDGQ-RRATLDVNGPLGDDLAYRLNGMYRDSDSY------ 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446855697 219 sssynsledLENQNSiyknlkylpeswaESRVGTLGLSW-IDDNTYLGVSYTHRHDE----YGLPA 279
Cdd:COG4774 158 ---------RDGVDN-------------DRWGIAPSLTWrLGDRTRLTLDYEYQDDDrtpdYGVPA 201
|
|
| FhuE |
COG4773 |
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ... |
22-279 |
1.23e-09 |
|
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];
Pssm-ID: 443805 [Multi-domain] Cd Length: 692 Bit Score: 61.83 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 22 AAEGPVTTLNTIVLTAQSDELGSEL---------LGKSLN--------VSNQFIDTsklkQRSTTLGDALGTELGIHSNQ 84
Cdd:COG4773 24 AAAAEATTLPEVTVTGTAEGTGGYTakssstatkLDTPLRetpqsvsvVTRQLIED----QGATTLDDALRNVPGVTVSS 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 85 Y-GGGASTPIIRGQEGKRIkvLQNNADVLDMSNMSPDhavtvePSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQ 163
Cdd:COG4773 100 YdGGGRDSFSIRGFSIDNY--LRDGLPLGGFGGGQPD------TANLERVEVLKGPAGLLYGAGSPGGLVNLV-----TK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 164 MPQDGLEGNTTLRFntGS-NEKLTTAGVTVGLSP--HVALRAEGLYRNAGNYktphyqsssynsledLENQNSiyknlky 240
Cdd:COG4773 167 RPTAEPQGEVSLSA--GSwDTYRATADVGGPLNEdgTLRYRLNAAYEDGDSF---------------RDGVDN------- 222
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 446855697 241 lpeswaESRVGTLGLSW-IDDNTYLGVSYTHRHDEYGLPA 279
Cdd:COG4773 223 ------RRTLIAPSLDWdLTDDTTLTLGAEYQDDDSTGDR 256
|
|
| PRK13483 |
PRK13483 |
ligand-gated channel protein; |
9-181 |
1.05e-07 |
|
ligand-gated channel protein;
Pssm-ID: 184080 [Multi-domain] Cd Length: 660 Bit Score: 55.55 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 9 LALITLGASKILLAAEGPVTTLNTIVLTAQsdelGSELLGKSLNVSNQFIDTSKLKQRS-TTLGDALGTELGIhsNQYGG 87
Cdd:PRK13483 12 LCLLPAVFVTHALAQAAPDKTMETVVVTAS----GYEQQIRDAPASISVITREDLENRFyRDLTDALLDVPGV--VVTGG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 88 GASTPI-IRGQ---------EGKRikvlQNNADVLDMSNmSPDHAVTVEPSLA--KSIEIIRGASTLLYSSNSAAGVVNV 155
Cdd:PRK13483 86 GDRTDIsLRGMgsqytlilvDGKR----QSSRETRPNSD-GPGVEQAWTPPLAaiERIEVIRGPMSSLYGSDAIGGVINI 160
|
170 180
....*....|....*....|....*.
gi 446855697 156 IDYKIPTQMpQDGLEGNTTLRFNTGS 181
Cdd:PRK13483 161 ITRKVPNEW-QGEVRLDTTLQENSDS 185
|
|
| TonB-siderophor |
TIGR01783 |
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ... |
64-212 |
2.65e-07 |
|
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]
Pssm-ID: 273805 [Multi-domain] Cd Length: 651 Bit Score: 54.34 E-value: 2.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 64 KQRSTTLGDALGTELGI--HSNQYGGGASTPIIRGqegkrikvLQNNADVLDMS-NMSPDHA----VTVEPSLAKSIEII 136
Cdd:TIGR01783 16 DQQAGSLSEALQRVPGVvvGGSGGTTQFGNITIRG--------FGLEVDIDNVYlDGVPLLSrgnlAIVDPAMVERVEVL 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446855697 137 RGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGNTTlrFNTGSNEKLTTA---GVTVGLSPHVALRAEGLYRNAGNY 212
Cdd:TIGR01783 88 RGPASLLYGGSAPGGVINIV-----TKRPQDEPKGSVT--FGAGTRSGYRTAfdlGGPLGADGTFRGRLNGARQDGDSF 159
|
|
| btuB |
PRK10641 |
TonB-dependent vitamin B12 receptor BtuB; |
67-182 |
5.17e-04 |
|
TonB-dependent vitamin B12 receptor BtuB;
Pssm-ID: 236730 [Multi-domain] Cd Length: 614 Bit Score: 43.44 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 67 STTLGDALGTELGIHSNQYGG-GASTPI-IRGQEGKRIKVL-----QNNADVLDMSNMSpdhavTVEPSLAKSIEIIRGA 139
Cdd:PRK10641 59 SKSVNDVLRRLPGVDIAQNGGlGQLSSLfIRGTNSSHVLVLidgvrLNQAGISGSADLS-----QIPISLVQRIEYIRGP 133
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 446855697 140 STLLYSSNSAAGVVNVIdykipTQMPQDGlegnTTLRFNTGSN 182
Cdd:PRK10641 134 RSAVYGSDAIGGVVNII-----TTRDKPG----TTLSAGWGSN 167
|
|
| PRK13513 |
PRK13513 |
ligand-gated channel protein; |
2-206 |
1.53e-03 |
|
ligand-gated channel protein;
Pssm-ID: 184104 [Multi-domain] Cd Length: 659 Bit Score: 42.06 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 2 LNKSKLFLALITLGASKILLAAEGPVTT-LNTIVLTAQSDELGSELLGKSLNV-SNQFIDTSKLKQRSTTLGDALGTELG 79
Cdd:PRK13513 6 RKTHKAALVIAAAISSQAYAAEKTNTATpTDTMVVTASGFQQRIQDAPASISVvTREQLENKAYRDVTDALKDVPGVVVT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 80 ihsnqyGGGASTPI-IRGQEGKRIKVLQNNADVlDMSNMSPDH-AVTVE----PSLA--KSIEIIRGASTLLYSSNSAAG 151
Cdd:PRK13513 86 ------GGGSTSDIsIRGMAAKYTLILVDGKRV-DTRSTRPNSdGSGIEqgwlPPLAaiERIEVVRGPMSSLYGSDAMGG 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 446855697 152 VVNVIDYKIPTQMpQDGLEGNTTLRFNTGSNEKLTTAGVTVGlsPHV----ALRAEGLY 206
Cdd:PRK13513 159 VINIITRKVQKEW-HGSLRADATLQEDSKSGDIFQTNAYASG--PLIdgllGLKVSGLL 214
|
|
| PRK13528 |
PRK13528 |
outer membrane receptor FepA; Provisional |
125-214 |
1.82e-03 |
|
outer membrane receptor FepA; Provisional
Pssm-ID: 237413 [Multi-domain] Cd Length: 727 Bit Score: 41.67 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 125 VEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIdykipTQMPQDGLEGNTTLRFNTGSNEKL-TTAGVTVGLSPHVALRAE 203
Cdd:PRK13528 139 VPPEMVERIEVIRGPAAARYGSGAAGGVVNII-----TKRPTNDWHGSLSLYTNQPESSKEgATRRANFSLSGPLAGDAL 213
|
90
....*....|..
gi 446855697 204 GlYRNAGNY-KT 214
Cdd:PRK13528 214 T-MRLYGNLnKT 224
|
|
| PRK13524 |
PRK13524 |
FepA family TonB-dependent siderophore receptor; |
125-173 |
3.81e-03 |
|
FepA family TonB-dependent siderophore receptor;
Pssm-ID: 237410 [Multi-domain] Cd Length: 744 Bit Score: 40.78 E-value: 3.81e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446855697 125 VEPSLAKSIEIIRGASTLLYSSNSAAGVVNVIDyKIPTQ-----------MPQDGLEGNT 173
Cdd:PRK13524 141 VPPEMIERIEVLRGPAAARYGNGAAGGVVNIIT-KKPTGewhgswntyfnAPEHKAEGAT 199
|
|
| |
