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Conserved domains on  [gi|446343146|ref|WP_000421001|]
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transposase family protein [Escherichia coli]

Protein Classification

transposase family protein( domain architecture ID 10619169)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

PubMed:  11774877

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-79 3.70e-36

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


:

Pssm-ID: 433493  Cd Length: 88  Bit Score: 116.87  E-value: 3.70e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446343146   7 MEHISITPDYRQAWKVVHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVS 79
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLA 73
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-79 3.70e-36

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 116.87  E-value: 3.70e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446343146   7 MEHISITPDYRQAWKVVHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVS 79
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLA 73
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-79 3.08e-27

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 100.31  E-value: 3.08e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446343146  29 ILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVS 79
Cdd:NF033564   1 ILFLALCAVLSGAEGWEEIEDFGEAKLDWLRRFLPLPNGIPSHDTFARVFS 51
 
Name Accession Description Interval E-value
DDE_Tnp_1_assoc pfam13808
DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family ...
 7-79 3.70e-36

DDE_Tnp_1-associated; This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.


Pssm-ID: 433493  Cd Length: 88  Bit Score: 116.87  E-value: 3.70e-36
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446343146   7 MEHISITPDYRQAWKVVHKLSDILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVS 79
Cdd:pfam13808  1 LEHFSEIPDPRRPRGKRHPLTDILLIALCAVIAGADSWEEIAEFGKDKLEWLRRFLPLPNGIPSHDTIRRVLA 73
transpos_ISAs1 NF033564
ISAs1 family transposase;
29-79 3.08e-27

ISAs1 family transposase;


Pssm-ID: 411194 [Multi-domain]  Cd Length: 314  Bit Score: 100.31  E-value: 3.08e-27
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446343146  29 ILLLTICAVISGAEGWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVS 79
Cdd:NF033564   1 ILFLALCAVLSGAEGWEEIEDFGEAKLDWLRRFLPLPNGIPSHDTFARVFS 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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