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Conserved domains on  [gi|446092828|ref|WP_000170683|]
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DUF3560 domain-containing protein [Escherichia coli]

Protein Classification

DUF3560 domain-containing protein( domain architecture ID 10572619)

DUF3560 domain-containing protein similar to Escherichia coli YdbA domain protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3560 pfam12083
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. ...
 90-209 1.02e-41

Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.


:

Pssm-ID: 432317 [Multi-domain]  Cd Length: 124  Bit Score: 144.40  E-value: 1.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446092828   90 ERQEARAERFTGYSGKRASESAQALDEVKRLAAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFERAEYWEERAR 169
Cdd:pfam12083   4 ERAEARAERYEDYADRAAARADAAYAAADSMADAIPLGQPILVGHHSEKRHRRYRERIWNNMGKAVEESDKAEYYEQRAA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 446092828  170 SALLHAK-YKERPDVRWRRIKKIEADLRKAEKTIAQSQKYL 209
Cdd:pfam12083  84 AAESNASiSLDDPDAIERRIKKLEAEKRKQERMKAANEIIL 124
 
Name Accession Description Interval E-value
DUF3560 pfam12083
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. ...
 90-209 1.02e-41

Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.


Pssm-ID: 432317 [Multi-domain]  Cd Length: 124  Bit Score: 144.40  E-value: 1.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446092828   90 ERQEARAERFTGYSGKRASESAQALDEVKRLAAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFERAEYWEERAR 169
Cdd:pfam12083   4 ERAEARAERYEDYADRAAARADAAYAAADSMADAIPLGQPILVGHHSEKRHRRYRERIWNNMGKAVEESDKAEYYEQRAA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 446092828  170 SALLHAK-YKERPDVRWRRIKKIEADLRKAEKTIAQSQKYL 209
Cdd:pfam12083  84 AAESNASiSLDDPDAIERRIKKLEAEKRKQERMKAANEIIL 124
 
Name Accession Description Interval E-value
DUF3560 pfam12083
Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. ...
 90-209 1.02e-41

Domain of unknown function (DUF3560); This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.


Pssm-ID: 432317 [Multi-domain]  Cd Length: 124  Bit Score: 144.40  E-value: 1.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446092828   90 ERQEARAERFTGYSGKRASESAQALDEVKRLAAMIPPGQPILVGHHSERRARRDAQRIENGMKRAVMLFERAEYWEERAR 169
Cdd:pfam12083   4 ERAEARAERYEDYADRAAARADAAYAAADSMADAIPLGQPILVGHHSEKRHRRYRERIWNNMGKAVEESDKAEYYEQRAA 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 446092828  170 SALLHAK-YKERPDVRWRRIKKIEADLRKAEKTIAQSQKYL 209
Cdd:pfam12083  84 AAESNASiSLDDPDAIERRIKKLEAEKRKQERMKAANEIIL 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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