NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446084950|ref|WP_000162805|]
View 

MULTISPECIES: DsbA family protein [Staphylococcus]

Protein Classification

DsbA family protein( domain architecture ID 11447254)

DsbA family protein belongs to the thioredoxin superfamily of proteins containing a redox active CXXC motif, similar to DsbA that is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm

CATH:  3.40.30.10
Gene Ontology:  GO:0015036
SCOP:  3000031

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
33-196 1.73e-31

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 111.63  E-value: 1.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  33 KPLVVIYGDYKCPYCKELdEKVMPKLRKNYIDDhKVEYQFVNLAFLGKDSIVGSRASHAVlmYAPKSFLDFQKQLFAAQQ 112
Cdd:COG1651    1 KVTVVEFFDYQCPYCARF-HPELPELLKKYVDG-KVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950 113 DenkewLTKELLDKHIKQLHLDKETENKIIKDYKTKDskswkAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEK 192
Cdd:COG1651   77 A-----LTDDDLREIAKEAGLDAAKFDACLNSGAVAA-----KVEADTALAQALGVTGTPTFVVNGKLVSGAVPYEELEA 146

                 ....
gi 446084950 193 LLKD 196
Cdd:COG1651  147 ALDA 150
 
Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
33-196 1.73e-31

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 111.63  E-value: 1.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  33 KPLVVIYGDYKCPYCKELdEKVMPKLRKNYIDDhKVEYQFVNLAFLGKDSIVGSRASHAVlmYAPKSFLDFQKQLFAAQQ 112
Cdd:COG1651    1 KVTVVEFFDYQCPYCARF-HPELPELLKKYVDG-KVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950 113 DenkewLTKELLDKHIKQLHLDKETENKIIKDYKTKDskswkAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEK 192
Cdd:COG1651   77 A-----LTDDDLREIAKEAGLDAAKFDACLNSGAVAA-----KVEADTALAQALGVTGTPTFVVNGKLVSGAVPYEELEA 146

                 ....
gi 446084950 193 LLKD 196
Cdd:COG1651  147 ALDA 150
Thioredoxin_4 pfam13462
Thioredoxin;
31-196 1.05e-26

Thioredoxin;


Pssm-ID: 433227 [Multi-domain]  Cd Length: 164  Bit Score: 99.72  E-value: 1.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950   31 NGKPLVVIYGDYKCPYCKELDEKVMPKLRKnYIDDHKVEYQFVNLAFLG-KDSIVGSRASHAVLMYAPKSFLDFQKQLFA 109
Cdd:pfam13462  11 DAPVTVVEYADLRCPHCAKFHEEVLKLLEE-YIDTGKVRFIIRDFPLDGeGESLLAAMAARCAGDQSPEYFLVIDKLLYS 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  110 AQQDENkewltkelLDKHIKQLHLDKETEnkiiKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYES 189
Cdd:pfam13462  90 QQEEWA--------QDLELAALAGLKDEE----FEACLEEEDFLALVMADVKEARAAGINFTPTFIINGKKVDGPLTYEE 157

                  ....*..
gi 446084950  190 YEKLLKD 196
Cdd:pfam13462 158 LKKLIDD 164
DsbA_Com1_like cd03023
DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer ...
30-181 7.29e-13

DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.


Pssm-ID: 239321 [Multi-domain]  Cd Length: 154  Bit Score: 63.38  E-value: 7.29e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  30 KNGKPLVVIYGDYKCPYCKeldeKVMPKLRKNYIDDHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFA 109
Cdd:cd03023    3 PNGDVTIVEFFDYNCGYCK----KLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMA 78
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446084950 110 AQQDenkewLTKELLDKHIKQLHLDketENKIIKDYKTKDSKswKAAEKDKKIAKDNHIKTTPtAFINGEKV 181
Cdd:cd03023   79 TRGR-----LNEESLLRIAKKAGLD---EAKLKKDMDDPEIE--ATIDKNRQLARALGITGTP-AFIIGDTV 139
 
Name Accession Description Interval E-value
DsbG COG1651
Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, ...
33-196 1.73e-31

Protein thiol-disulfide isomerase DsbC [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441257 [Multi-domain]  Cd Length: 152  Bit Score: 111.63  E-value: 1.73e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  33 KPLVVIYGDYKCPYCKELdEKVMPKLRKNYIDDhKVEYQFVNLAFLGKDSIVGSRASHAVlmYAPKSFLDFQKQLFAAQQ 112
Cdd:COG1651    1 KVTVVEFFDYQCPYCARF-HPELPELLKKYVDG-KVRVVYRPFPLLHPDSLRAARAALCA--ADQGKFWAFHDALFANQP 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950 113 DenkewLTKELLDKHIKQLHLDKETENKIIKDYKTKDskswkAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEK 192
Cdd:COG1651   77 A-----LTDDDLREIAKEAGLDAAKFDACLNSGAVAA-----KVEADTALAQALGVTGTPTFVVNGKLVSGAVPYEELEA 146

                 ....
gi 446084950 193 LLKD 196
Cdd:COG1651  147 ALDA 150
Thioredoxin_4 pfam13462
Thioredoxin;
31-196 1.05e-26

Thioredoxin;


Pssm-ID: 433227 [Multi-domain]  Cd Length: 164  Bit Score: 99.72  E-value: 1.05e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950   31 NGKPLVVIYGDYKCPYCKELDEKVMPKLRKnYIDDHKVEYQFVNLAFLG-KDSIVGSRASHAVLMYAPKSFLDFQKQLFA 109
Cdd:pfam13462  11 DAPVTVVEYADLRCPHCAKFHEEVLKLLEE-YIDTGKVRFIIRDFPLDGeGESLLAAMAARCAGDQSPEYFLVIDKLLYS 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  110 AQQDENkewltkelLDKHIKQLHLDKETEnkiiKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYES 189
Cdd:pfam13462  90 QQEEWA--------QDLELAALAGLKDEE----FEACLEEEDFLALVMADVKEARAAGINFTPTFIINGKKVDGPLTYEE 157

                  ....*..
gi 446084950  190 YEKLLKD 196
Cdd:pfam13462 158 LKKLIDD 164
DsbA_Com1_like cd03023
DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer ...
30-181 7.29e-13

DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.


Pssm-ID: 239321 [Multi-domain]  Cd Length: 154  Bit Score: 63.38  E-value: 7.29e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  30 KNGKPLVVIYGDYKCPYCKeldeKVMPKLRKNYIDDHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFA 109
Cdd:cd03023    3 PNGDVTIVEFFDYNCGYCK----KLAPELEKLLKEDPDVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALMA 78
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446084950 110 AQQDenkewLTKELLDKHIKQLHLDketENKIIKDYKTKDSKswKAAEKDKKIAKDNHIKTTPtAFINGEKV 181
Cdd:cd03023   79 TRGR-----LNEESLLRIAKKAGLD---EAKLKKDMDDPEIE--ATIDKNRQLARALGITGTP-AFIIGDTV 139
DsbA_DsbA cd03019
DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein ...
27-178 1.51e-10

DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.


Pssm-ID: 239317 [Multi-domain]  Cd Length: 178  Bit Score: 57.68  E-value: 1.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  27 TSSKNGKPLVVIYGDYKCPYCKELdEKVMPKLRKNYIDDhkVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSflDFQKQ 106
Cdd:cd03019   10 PPIPSGKPEVIEFFSYGCPHCYNF-EPILEAWVKKLPKD--VKFEKVPVVFGGGEGEPLARAFYAAEALGLED--KLHAA 84
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446084950 107 LFAAQQDENKEWLTKELLDKHIKQLHLDKetenkiiKDY-KTKDSKSWKA-AEKDKKIAKDNHIKTTPTAFING 178
Cdd:cd03019   85 LFEAIHEKRKRLLDPDDIRKIFLSQGVDK-------KKFdAAYNSFSVKAlVAKAEKLAKKYKITGVPAFVVNG 151
DsbA_family cd02972
DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) ...
36-181 6.83e-08

DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.


Pssm-ID: 239270 [Multi-domain]  Cd Length: 98  Bit Score: 48.56  E-value: 6.83e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  36 VVIYGDYKCPYCKELDEKVMPKLrknYIDDHKVEYQFVNLAFLGKDSIVGSRAShavlmyapksfldfqkQLFAAQQDEN 115
Cdd:cd02972    1 IVEFFDPLCPYCYLFEPELEKLL---YADDGGVRVVYRPFPLLGGMPPNSLAAA----------------RAALAAAAQG 61
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446084950 116 KEWLTKELLdkhikqlhldketenkiikdyktkdskswkaaeKDKKIAKDNHIKTTPTAFINGEKV 181
Cdd:cd02972   62 KFEALHEAL---------------------------------ADTALARALGVTGTPTFVVNGEKY 94
SoxW COG2143
Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones] ...
1-84 1.87e-07

Thioredoxin-related protein SoxW [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 441746 [Multi-domain]  Cd Length: 146  Bit Score: 48.36  E-value: 1.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950   1 MTKKLLTLFIVSMLILTACGKKESATTS--------SKNGKPLVVIYGDYKCPYCKELDEKVM-PKLRKNYIDDHkveYQ 71
Cdd:COG2143    1 MKKLLLLLLLLLLLAAAAAAQEISFLLDleedlalaKAEGKPILLFFESDWCPYCKKLHKEVFsDPEVAAYLKEN---FV 77
                         90
                 ....*....|...
gi 446084950  72 FVNLAFLGKDSIV 84
Cdd:COG2143   78 VVQLDAEGDKEVT 90
Thioredoxin_5 pfam13743
Thioredoxin;
44-191 5.36e-05

Thioredoxin;


Pssm-ID: 404608 [Multi-domain]  Cd Length: 176  Bit Score: 41.83  E-value: 5.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950   44 CPYCKELdEKVMPKLRKNYidDHKVEYQFV---NL----AFLGKDSIVG--------------SRASHAVLMYAPKSFLD 102
Cdd:pfam13743   8 CPECWAI-EPQIKKLKVEY--GQKFDIRFIplgNLqtlnYNMGRMPIDGdvlrndpfsspylaSLAYKAAELQGKKKGRR 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446084950  103 FQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETenkIIKDYKTKDSKswKAAEKDKKIAKDNHIKTTPTAFI------ 176
Cdd:pfam13743  85 FLRKLQEAVFLEKQNISDEELLLECAEKAGLDVEE---FKEDLHSDLAK--KAFQCDQKLAAEMGVTEHPTLVFfnsnve 159
                         170
                  ....*....|....*.
gi 446084950  177 -NGEKVEDPYDYESYE 191
Cdd:pfam13743 160 eEGLKVEGCYPYDVYE 175
Thioredoxin_2 pfam13098
Thioredoxin-like domain;
30-75 3.81e-03

Thioredoxin-like domain;


Pssm-ID: 379034 [Multi-domain]  Cd Length: 103  Bit Score: 35.48  E-value: 3.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 446084950   30 KNGKPLVVIYGDYKCPYCKELDEKVMPKLR-KNYIDDHkVEYQFVNL 75
Cdd:pfam13098   2 GNGKPVLVVFTDPDCPYCKKLKKELLEDPDvTVYLGPN-FVFIAVNI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH