NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2533236976|gb|WKB17703|]
View 

cytochrome b, partial (mitochondrion) [Theileria annulata]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
QcrB/PetB super family cl34219
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-71 4.83e-15

Cytochrome b subunit of the bc complex [Energy production and conversion];


The actual alignment was detected with superfamily member COG1290:

Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 67.12  E-value: 4.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2533236976   2 HLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWG 95
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-71 4.83e-15

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 67.12  E-value: 4.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2533236976   2 HLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWG 95
CYTB MTH00145
cytochrome b; Provisional
 1-71 1.27e-12

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 60.30  E-value: 1.27e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2533236976   1 SHLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00145   17 GSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-71 4.63e-08

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 46.99  E-value: 4.63e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2533236976   3 LLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANG 69
 
Name Accession Description Interval E-value
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-71 4.83e-15

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 67.12  E-value: 4.83e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2533236976   2 HLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWG 95
CYTB MTH00145
cytochrome b; Provisional
 1-71 1.27e-12

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 60.30  E-value: 1.27e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2533236976   1 SHLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00145   17 GSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANG 87
CYTB MTH00016
cytochrome b; Validated
 3-71 2.70e-12

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 59.69  E-value: 2.70e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2533236976   3 LLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00016   19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87
CYTB MTH00086
cytochrome b; Provisional
 1-71 3.07e-11

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 56.49  E-value: 3.07e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2533236976   1 SHLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00086    5 SLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNG 75
CYTB MTH00156
cytochrome b; Provisional
 9-71 3.98e-11

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 56.33  E-value: 3.98e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00156   14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANG 76
CYTB MTH00224
cytochrome b; Provisional
 1-71 2.20e-10

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 54.16  E-value: 2.20e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2533236976   1 SHLLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00224   17 GSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87
CYTB MTH00191
cytochrome b; Provisional
 8-71 7.14e-10

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 52.61  E-value: 7.14e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2533236976   8 VPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00191   20 SPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83
CYTB MTH00119
cytochrome b; Provisional
 8-71 3.54e-09

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 50.67  E-value: 3.54e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2533236976   8 VPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00119   24 TPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANG 87
CYTB MTH00100
cytochrome b; Provisional
 9-71 5.36e-09

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 50.02  E-value: 5.36e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANG 86
CYTB MTH00074
cytochrome b; Provisional
 9-71 9.93e-09

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 49.29  E-value: 9.93e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00074   25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANG 87
CYTB MTH00053
cytochrome b; Provisional
 9-71 4.24e-08

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 47.78  E-value: 4.24e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00053   25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANG 87
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-71 4.63e-08

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 46.99  E-value: 4.63e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2533236976   3 LLSYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANG 69
CYTB MTH00022
cytochrome b; Validated
 9-71 9.79e-08

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 46.62  E-value: 9.79e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00022   23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANG 85
CYTB MTH00131
cytochrome b; Provisional
 9-71 1.05e-07

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 46.57  E-value: 1.05e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00131   24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANG 86
CYTB MTH00034
cytochrome b; Validated
 9-71 1.27e-07

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 46.24  E-value: 1.27e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2533236976   9 PKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00034   24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANG 86
petB CHL00070
cytochrome b6
 5-68 1.04e-06

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 43.56  E-value: 1.04e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2533236976   5 SYMVPKNLNLNWNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYH 68
Cdd:CHL00070   23 SKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVH 86
CYTB MTH00046
cytochrome b; Validated
 9-71 2.96e-06

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 42.28  E-value: 2.96e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2533236976   9 PKNLNLN--WNFGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:MTH00046   13 PTNYSLNyyWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWG 77
PRK03735 PRK03735
cytochrome b6; Provisional
 18-71 2.27e-05

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 39.69  E-value: 2.27e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2533236976  18 FGFILGILLVLQIISGLMLSFFYVPAKGMAFESTLAVMLNICFGWFVRLYHSFG 71
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWG 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH