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Conserved domains on  [gi|2522946562|gb|WJH82497|]
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cytochrome b, partial (mitochondrion) [Ctenodactylus gundi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-110 2.49e-81

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 242.62  E-value: 2.49e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00100   30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF 109

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00100  110 LETWNIGIILLFTVMATAFMGYVLPWGQMS 139
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-110 2.49e-81

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 242.62  E-value: 2.49e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00100   30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF 109

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00100  110 LETWNIGIILLFTVMATAFMGYVLPWGQMS 139
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-110 1.36e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 150.98  E-value: 1.36e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSY-- 78
Cdd:cd00284    22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkk 101

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2522946562  79 LLLETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:cd00284   102 PRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-110 2.88e-46

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 152.64  E-value: 2.88e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSY-- 78
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2522946562  79 ---LLletWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:COG1290   119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLS 150
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-110 1.98e-43

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 139.82  E-value: 1.98e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYG--SY 78
Cdd:pfam00033  13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2522946562  79 LLLETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:pfam00033  93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-110 2.49e-81

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 242.62  E-value: 2.49e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00100   30 WWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLF 109

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00100  110 LETWNIGIILLFTVMATAFMGYVLPWGQMS 139
CYTB MTH00119
cytochrome b; Provisional
 1-110 4.55e-75

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 226.32  E-value: 4.55e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00119   31 WWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLY 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00119  111 KETWNTGVILLLLLMATAFVGYVLPWGQMS 140
CYTB MTH00074
cytochrome b; Provisional
 1-110 8.55e-73

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 220.71  E-value: 8.55e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00074   31 LWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMY 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00074  111 KETWNIGVILLFLVMATAFVGYVLPWGQMS 140
CYTB MTH00131
cytochrome b; Provisional
 1-110 7.80e-72

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 218.37  E-value: 7.80e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00131   30 WWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLY 109

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00131  110 KETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
CYTB MTH00156
cytochrome b; Provisional
 1-110 4.62e-71

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 215.42  E-value: 4.62e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00156   20 WWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKL 99

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00156  100 KHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
CYTB MTH00191
cytochrome b; Provisional
 1-110 3.50e-70

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 213.62  E-value: 3.50e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00191   27 WWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLN 106

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00191  107 KETWNVGVILLILSMATAFLGYVLPWGQMS 136
CYTB MTH00034
cytochrome b; Validated
 1-110 8.00e-67

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 205.32  E-value: 8.00e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00034   30 WWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVN 109

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00034  110 IETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
CYTB MTH00145
cytochrome b; Provisional
 1-110 2.05e-66

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 204.37  E-value: 2.05e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00145   31 WWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLM 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00145  111 QHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
CYTB MTH00016
cytochrome b; Validated
 1-110 1.45e-64

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 199.52  E-value: 1.45e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00016   31 WWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFL 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00016  111 METWNIGVILLLLTMATAFLGYVLPWGQMS 140
CYTB MTH00022
cytochrome b; Validated
 2-110 9.35e-56

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 176.82  E-value: 9.35e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   2 WNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLLL 81
Cdd:MTH00022   30 WNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKF 109

                          90       100
                  ....*....|....*....|....*....
gi 2522946562  82 ETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00022  110 HVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
CYTB MTH00224
cytochrome b; Provisional
 1-110 1.50e-54

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 173.95  E-value: 1.50e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00224   31 WWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNL 110

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00224  111 SETWNIGVILFILTMATAFLGYVLPWGQMS 140
CYTB MTH00053
cytochrome b; Provisional
 2-110 8.73e-53

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 169.50  E-value: 8.73e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   2 WNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLLL 81
Cdd:MTH00053   32 WNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKI 111

                          90       100
                  ....*....|....*....|....*....
gi 2522946562  82 ETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00053  112 IVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-110 1.36e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 150.98  E-value: 1.36e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSY-- 78
Cdd:cd00284    22 WWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkk 101

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2522946562  79 LLLETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:cd00284   102 PRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-110 2.88e-46

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 152.64  E-value: 2.88e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSY-- 78
Cdd:COG1290    39 SYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkk 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2522946562  79 ---LLletWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:COG1290   119 preLN---WIIGVLLLLLTMAEAFTGYSLPWDQLS 150
CYTB MTH00033
cytochrome b; Provisional
 1-110 1.54e-43

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 145.47  E-value: 1.54e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00033   27 WWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSR 106

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00033  107 VLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-110 1.98e-43

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 139.82  E-value: 1.98e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYG--SY 78
Cdd:pfam00033  13 WYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSY 92

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2522946562  79 LLLETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:pfam00033  93 PRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
CYTB MTH00086
cytochrome b; Provisional
 1-110 5.57e-37

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 127.75  E-value: 5.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00086   19 WWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRL 98

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00086   99 KKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
CYTB MTH00046
cytochrome b; Validated
 1-110 1.22e-26

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 100.44  E-value: 1.22e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   1 WWNFGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLL 80
Cdd:MTH00046   21 YWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSK 100

                          90       100       110
                  ....*....|....*....|....*....|
gi 2522946562  81 LETWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:MTH00046  101 KGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
PRK03735 PRK03735
cytochrome b6; Provisional
 4-108 4.42e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 86.30  E-value: 4.42e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   4 FGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLLLE- 82
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100
                  ....*....|....*....|....*..
gi 2522946562  83 -TWNIGIILLFTTMATAFMGYVLPWGQ 108
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 4-109 1.62e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 68.59  E-value: 1.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2522946562   4 FGSLLGVCLILQIMTGLFLAMHYTADTTSAFSSITHICRDVNYGWMIRYMHANGASMFFICLFIHIGRGMYYGSYLLLE- 82
Cdd:CHL00070   36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                          90       100
                  ....*....|....*....|....*...
gi 2522946562  83 -TWNIGIILLFTTMATAFMGYVLPWGQM 109
Cdd:CHL00070  116 lTWVTGVVLAVLTVSFGVTGYSLPWDQI 143
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
59-110 8.26e-10

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 53.01  E-value: 8.26e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2522946562  59 SMFFICLFIHIGRGMYYGSYLLLE--TWNIGIILLFTTMATAFMGYVLPWGQMS 110
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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