|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
4-1303 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1166.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 4 MYQRSPRMKEVLKKETVEILRPPVEPSKPTFSLISIIIPIVMTAVTVSLYFYLSKSGklsnnSFMIIqlvMMSMMLMTYT 83
Cdd:TIGR03928 5 DYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRG-----IFIIA---SIAMSLVTII 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 84 IPFFVYLGNKKDYKRKIEEREQMYRTELQKHRDELTREAERQVQVMHDIHGDPEVCCQIVKNKHSSLWERSPEDNDFLQV 163
Cdd:TIGR03928 77 FSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 164 RAGTGEVPFRITVVPPRQDGY-EKEPLIEAAHELAEDFRMVKDASIVLPIYESkVVGIVGEREDVLSMLRVIVTQLTTRH 242
Cdd:TIGR03928 157 RLGTGNVPSSFEIKFPEEEFSqRKDELLDEAQELKEKYNTIENVPIVLDLSNG-PIGYVGKRSLVLEELQNLVGQLAFFH 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 243 SPDEMKLAAFYEDKEADEWEWMRWFPHFWDDERDQRYMADRHSGVHQLADHLYTLLHRRKMIRKERGKKSPD--LPCYVV 320
Cdd:TIGR03928 236 SYHDVQFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLALDDANSKEKKrfSPHYVF 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 321 LLSERDIIEEEPLLPLILEDAEAVTTCTIILASRKEYLPMHCQLVVEAgKKQGSYSKKTEQADVIHGSFVPDRMTREEAE 400
Cdd:TIGR03928 316 LITDRKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDI-KNRNEGEIVLEEGELVEKSFTPDHLDNEDLE 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 401 ISARYMAPLRLKRSSASDIPPLLPLFDMLDVSRVEQLNVESRWACNRHPNTLPVPMGVRAGGKRVYINLHDKIerqgHGP 480
Cdd:TIGR03928 395 EYSRTLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKA----HGP 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 481 HGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSNTFNNLPHVVGTITNLDQSLMERAKISLRAELVRR 560
Cdd:TIGR03928 471 HGLVAGTTGSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKR 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 561 QKLLNDAgNLQHIDEYYK-WLDSHHAEPLPHLVIIIDEFAQLKKEQPEFMDELISIAAIGRTLGVHLILATQKPAGVVDD 639
Cdd:TIGR03928 551 QRLFGEN-NVNHINQYQKlYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDD 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 640 KIWSNSRFRICLRVQSEGDSRDMIKIPNAAWITKPGRGYFQVGSDEVFEEMQFAWSGAPYTSSEEDS----------ASS 709
Cdd:TIGR03928 630 QIWSNSRFKLALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKeeediymindLGQ 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 710 LPLMEVRLNGKREPLLTGERVTmmksegsskQLQVFIDYIAETAEKQGIKRLQGPWLPPLPELIELQEiTSKGSLTQNQA 789
Cdd:TIGR03928 710 YELLNEDLSGLKRKKEIKEVPT---------ELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDD-LHAVEFDKLWS 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 790 HEGMTWEPVVGLLDDLPNQKQVPLRISL-HSGHYAIYGMPGLGKTTFVQTLLMSLAEDNdSP--WHGYVIDMG-RMMREF 865
Cdd:TIGR03928 780 KPKEPLQATIGLLDDPELQSQEPLTLDLsKDGHLAIFGSPGYGKSTFLQTLIMSLARQH-SPeqLHFYLFDFGtNGLLPL 858
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 866 KNLPQIGGVMTAEDDDRIKRLFRYLSKVLMQRREMIADAGVKTISAYRRGTGQRIPQVLVVIDGYLSFRNS--YPDENEQ 943
Cdd:TIGR03928 859 KKLPHVADYFTLDEEEKIEKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEpfYEDFEEL 938
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 944 LEILLREGAGLGITFVITANRITDIFEKVRSNISNAISFEMADPSDYYYAVGRPsRVPSGYPPGRALVKGQtPPLEFQVA 1023
Cdd:TIGR03928 939 LIQLAREGASLGIYLVMTAGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRT-KFTIEEIPGRGLIKKD-EPTLFQTA 1016
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1024 LPVRGREESERAEQLKLRIQKIHNQYLGPEAPQIKPLPEVVTLSElLTEEDRLQEETAIYKVPVGLMTDDLSLFHISLRE 1103
Cdd:TIGR03928 1017 LPVKGEDDLEVIENIKAEIQKMNEAWTGERPKPIPMVPEELSLEE-FRERYEVRKILEEGSIPIGLDEETVEPVYIDLTE 1095
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1104 GPHFMVASPMEGGKSSFLMTFMLSLAYHhspEQLNMYTIDTryGEHGLGQLKDLPHVYKHAAREEEL----APLIQEVYE 1179
Cdd:TIGR03928 1096 NPHLLIVGESDDGKTNVLKSLLKTLAKQ---EKEKIGLIDS--IDRGLLAYRDLKEVATYIEEKEDLkeilAELKEEIEL 1170
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1180 RVMKLSSDTCG-------PEIVLFIDDADTLaKQMNDFTMKDQLGVIVRQGRDRGVHVVLAGVASDFpTFGADWVTD-VK 1251
Cdd:TIGR03928 1171 REAAYKEALQNetgepafKPILLIIDDLEDF-IQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSEL-SKSYDGVPKeIK 1248
|
1290 1300 1310 1320 1330
....*....|....*....|....*....|....*....|....*....|...
gi 2518080910 1252 ASQSGLLFGTLdpNDLSSFRIPYSESSaasnglKVLPPGQGYYVKRR-FSRIK 1303
Cdd:TIGR03928 1249 QLRTGILGMRK--SDQSFFKLPFTRSE------KELEPGEGYFVVNGkYQKIK 1293
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
452-634 |
2.87e-27 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 111.32 E-value: 2.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 452 LPVPMGVRAGGKRVYINLhdkierQGHGPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMsNTFNNL 531
Cdd:pfam01580 17 LPIALGKDISGNPEVFDL------KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGEL-SAYEDI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 532 PHVVGTITNLDQSLMERAKISLRAELVRRQKLLNDAG--------------NLQHIDEYYKWLDSHH--------AEPLP 589
Cdd:pfam01580 90 PHLLSVPVATDPKRALRALEWLVDEMERRYALFRALGvrsiagyngeiaedPLDGFGDVFLVIYGVHvmctagrwLEILP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2518080910 590 HLVIIIDEFAQLK----KEQPEFMDELIS-IAAIGRTLGVHLILATQKPA 634
Cdd:pfam01580 170 YLVVIVDERAELRlaapKDSEMRVEDAIVrLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
452-660 |
2.72e-26 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 115.79 E-value: 2.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 452 LPVPMGVRAGGKRVYINLhDKIerqghgPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKgggMS--NTFN 529
Cdd:COG1674 261 LPIALGKDISGEPVVADL-AKM------PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYN 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 530 NLPHVVG-TITNldqslMERAKISLR---AELVRRQKLLNDAGnLQHIDEY--------YKWLDSHHAEPLPHLVIIIDE 597
Cdd:COG1674 331 GIPHLLTpVVTD-----PKKAANALKwavREMERRYKLFAKAG-VRNIAGYnekvreakAKGEEEEGLEPLPYIVVIIDE 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2518080910 598 FAQL----KKEqpefMDELIS-IAAIGRTLGVHLILATQKP-AGVVDDKIWSNsrF--RICLRVQSEGDSR 660
Cdd:COG1674 405 LADLmmvaGKE----VEEAIArLAQKARAAGIHLILATQRPsVDVITGLIKAN--IpsRIAFAVSSKIDSR 469
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
448-763 |
3.33e-23 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 107.48 E-value: 3.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 448 HPNTLPVPMGVRAGGKRVYINLhdkierqGHGPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSnT 527
Cdd:PRK10263 986 NPSPLTVVLGKDIAGEPVVADL-------AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS-V 1057
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 528 FNNLPHVVGTITnldqSLMERAKISLR---AELVRRQKLL------NDAGNLQHI-----------DEYYKWLDSHHA-- 585
Cdd:PRK10263 1058 YEGIPHLLTEVV----TDMKDAANALRwcvNEMERRYKLMsalgvrNLAGYNEKIaeadrmmrpipDPYWKPGDSMDAqh 1133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 586 ---EPLPHLVIIIDEFAQLKKEQPEFMDELIS-IAAIGRTLGVHLILATQKPA-GVVDDKIWSNSRFRICLRVQSEGDSR 660
Cdd:PRK10263 1134 pvlKKEPYIVVLVDEFADLMMTVGKKVEELIArLAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSR 1213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 661 ---------------DMI-KIPNAawiTKPGR--GYFqVGSDEVFEEMQfAWS--GAP-----YTSSEE--------DSA 707
Cdd:PRK10263 1214 tildqagaesllgmgDMLySGPNS---TLPVRvhGAF-VRDQEVHAVVQ-DWKarGRPqyvdgITSDSEseggaggfDGA 1288
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2518080910 708 SSL-PLMEVRLNgkrepLLTGERvtmmKSEGSSKQLQVFIDY-----IAETAEKQGIKRLQG 763
Cdd:PRK10263 1289 EELdPLFDQAVQ-----FVTEKR----KASISGVQRQFRIGYnraarIIEQMEAQGIVSEQG 1341
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
481-653 |
9.56e-09 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 55.30 E-value: 9.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 481 HGLIAGTTGSGKSeviQSIVASLASEFHPHDLAFMlIDYKGGGmsntFNNLPhvvgtitnlDQSLMERAKISLRAELVRR 560
Cdd:cd01127 1 NTLVLGTTGSGKT---TSIVIPLLDQAARGGSVII-TDPKGEL----FLVIP---------DRDDSFAALRALFFNQLFR 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 561 QkllndagnLQHIdeyykwLDSHHAEPLPHLVIIIDEFAQLKKeqpefMDELISIAAIGRTLGVHLILATQ------KPA 634
Cdd:cd01127 64 A--------LTEL------ASLSPGRLPRRVWFILDEFANLGR-----IPNLPNLLATGRKRGISVVLILQslaqleAVY 124
|
170 180
....*....|....*....|
gi 2518080910 635 GVVDDK-IWSNSRFRICLRV 653
Cdd:cd01127 125 GKDGAQtILGNCNTKLYLGT 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T7_EssCb_Firm |
TIGR03928 |
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, ... |
4-1303 |
0e+00 |
|
type VII secretion protein EssC, C-terminal domain; This model describes the C-terminal domain, or longer subunit, of the Firmicutes type VII secretion protein EssC. This protein (homologous to EccC in Actinobacteria) and the WXG100 target proteins are the only homologous parts of type VII secretion between Firmicutes and Actinobacteria. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274860 [Multi-domain] Cd Length: 1296 Bit Score: 1166.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 4 MYQRSPRMKEVLKKETVEILRPPVEPSKPTFSLISIIIPIVMTAVTVSLYFYLSKSGklsnnSFMIIqlvMMSMMLMTYT 83
Cdd:TIGR03928 5 DYHRSPRIIYEEPTDKVKISKPPQEPDKPKRGLLRIILPPLVMIAVTVLISIFQPRG-----IFIIA---SIAMSLVTII 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 84 IPFFVYLGNKKDYKRKIEEREQMYRTELQKHRDELTREAERQVQVMHDIHGDPEVCCQIVKNKHSSLWERSPEDNDFLQV 163
Cdd:TIGR03928 77 FSTTTYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVLHYHNPSVEELKEMVENVNSRIWEKTPEHHDFLHV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 164 RAGTGEVPFRITVVPPRQDGY-EKEPLIEAAHELAEDFRMVKDASIVLPIYESkVVGIVGEREDVLSMLRVIVTQLTTRH 242
Cdd:TIGR03928 157 RLGTGNVPSSFEIKFPEEEFSqRKDELLDEAQELKEKYNTIENVPIVLDLSNG-PIGYVGKRSLVLEELQNLVGQLAFFH 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 243 SPDEMKLAAFYEDKEADEWEWMRWFPHFWDDERDQRYMADRHSGVHQLADHLYTLLHRRKMIRKERGKKSPD--LPCYVV 320
Cdd:TIGR03928 236 SYHDVQFVTIFPEEEKKKWEWMRWLPHFWLRDINVRGFVYNERTRDQLLNSLYQILKERKLALDDANSKEKKrfSPHYVF 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 321 LLSERDIIEEEPLLPLILEDAEAVTTCTIILASRKEYLPMHCQLVVEAgKKQGSYSKKTEQADVIHGSFVPDRMTREEAE 400
Cdd:TIGR03928 316 LITDRKLILDHVIMEYLNEDPSELGISLIFVQDVMESLPENVKTVIDI-KNRNEGEIVLEEGELVEKSFTPDHLDNEDLE 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 401 ISARYMAPLRLKRSSASDIPPLLPLFDMLDVSRVEQLNVESRWACNRHPNTLPVPMGVRAGGKRVYINLHDKIerqgHGP 480
Cdd:TIGR03928 395 EYSRTLAPLNHLQNLKNSIPESVTFLEMYGVKKVEELNIQERWAKNETYKSLAVPIGLRGKDDIVYLNLHEKA----HGP 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 481 HGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSNTFNNLPHVVGTITNLDQSLMERAKISLRAELVRR 560
Cdd:TIGR03928 471 HGLVAGTTGSGKSEILQTYILSLAVNFHPHEVAFLLIDYKGGGMANLFKNLPHLLGTITNLDGAQSMRALASIKAELKKR 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 561 QKLLNDAgNLQHIDEYYK-WLDSHHAEPLPHLVIIIDEFAQLKKEQPEFMDELISIAAIGRTLGVHLILATQKPAGVVDD 639
Cdd:TIGR03928 551 QRLFGEN-NVNHINQYQKlYKQGKAKEPMPHLFLISDEFAELKSEQPEFMKELVSTARIGRSLGVHLILATQKPSGVVDD 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 640 KIWSNSRFRICLRVQSEGDSRDMIKIPNAAWITKPGRGYFQVGSDEVFEEMQFAWSGAPYTSSEEDS----------ASS 709
Cdd:TIGR03928 630 QIWSNSRFKLALKVQDASDSNEILKTPDAAEITVPGRAYLQVGNNEVYELFQSAWSGAPYDPDKDKKeeediymindLGQ 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 710 LPLMEVRLNGKREPLLTGERVTmmksegsskQLQVFIDYIAETAEKQGIKRLQGPWLPPLPELIELQEiTSKGSLTQNQA 789
Cdd:TIGR03928 710 YELLNEDLSGLKRKKEIKEVPT---------ELEAVIDEIQAYTEELNIEALPSPWLPPLEEKIYLDD-LHAVEFDKLWS 779
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 790 HEGMTWEPVVGLLDDLPNQKQVPLRISL-HSGHYAIYGMPGLGKTTFVQTLLMSLAEDNdSP--WHGYVIDMG-RMMREF 865
Cdd:TIGR03928 780 KPKEPLQATIGLLDDPELQSQEPLTLDLsKDGHLAIFGSPGYGKSTFLQTLIMSLARQH-SPeqLHFYLFDFGtNGLLPL 858
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 866 KNLPQIGGVMTAEDDDRIKRLFRYLSKVLMQRREMIADAGVKTISAYRRGTGQRIPQVLVVIDGYLSFRNS--YPDENEQ 943
Cdd:TIGR03928 859 KKLPHVADYFTLDEEEKIEKLIRRIKKEIDRRKKLFSEYGVASISMYNKASGEKLPQIVIIIDNYDAVKEEpfYEDFEEL 938
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 944 LEILLREGAGLGITFVITANRITDIFEKVRSNISNAISFEMADPSDYYYAVGRPsRVPSGYPPGRALVKGQtPPLEFQVA 1023
Cdd:TIGR03928 939 LIQLAREGASLGIYLVMTAGRQNAVRMPLMNNIKTKIALYLIDKSEYRSIVGRT-KFTIEEIPGRGLIKKD-EPTLFQTA 1016
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1024 LPVRGREESERAEQLKLRIQKIHNQYLGPEAPQIKPLPEVVTLSElLTEEDRLQEETAIYKVPVGLMTDDLSLFHISLRE 1103
Cdd:TIGR03928 1017 LPVKGEDDLEVIENIKAEIQKMNEAWTGERPKPIPMVPEELSLEE-FRERYEVRKILEEGSIPIGLDEETVEPVYIDLTE 1095
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1104 GPHFMVASPMEGGKSSFLMTFMLSLAYHhspEQLNMYTIDTryGEHGLGQLKDLPHVYKHAAREEEL----APLIQEVYE 1179
Cdd:TIGR03928 1096 NPHLLIVGESDDGKTNVLKSLLKTLAKQ---EKEKIGLIDS--IDRGLLAYRDLKEVATYIEEKEDLkeilAELKEEIEL 1170
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1180 RVMKLSSDTCG-------PEIVLFIDDADTLaKQMNDFTMKDQLGVIVRQGRDRGVHVVLAGVASDFpTFGADWVTD-VK 1251
Cdd:TIGR03928 1171 REAAYKEALQNetgepafKPILLIIDDLEDF-IQRTDLEIQDILALIMKNGKKLGIHFIVAGTHSEL-SKSYDGVPKeIK 1248
|
1290 1300 1310 1320 1330
....*....|....*....|....*....|....*....|....*....|...
gi 2518080910 1252 ASQSGLLFGTLdpNDLSSFRIPYSESSaasnglKVLPPGQGYYVKRR-FSRIK 1303
Cdd:TIGR03928 1249 QLRTGILGMRK--SDQSFFKLPFTRSE------KELEPGEGYFVVNGkYQKIK 1293
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
35-699 |
2.80e-122 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 394.72 E-value: 2.80e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 35 SLISIIIPIVMTAVTVSL-YFYLSKSGKLSNNSFMIIQLVMMSMMLMTytipFFVYLGNKKDYKRKIEEREQMYRTELQK 113
Cdd:TIGR03924 2 PLLQKLLPVVMVVAVVGMvVMMFASGGRQRNPMFLIFPLMMLVSMLGM----LAGGRGGGGKKTPELDEDRRDYLRYLDQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 114 HRDELTREAERQVQVMHDIHGDPEVCCQIVknkHSS-LWERSPEDNDFLQVRAGTGEVPFRITVVPPRQDGYEK-EPLI- 190
Cdd:TIGR03924 78 LRREVRETAAAQRAALEWRHPDPDTLWALV---GTPrMWERRPGDPDFLEVRVGVGVQPLATRLVVPETGPVEDlEPVTa 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 191 EAAHELAEDFRMVKDASIVLPIYESKVVGIVGEREDVLSMLRVIVTQLTTRHSPDEMKLAAFYEDkEADEWEWMRWFPHF 270
Cdd:TIGR03924 155 VALRRFLRAHSTVPDLPVAVSLRGFARISLVGDRDQARALARAMLCQLAVFHGPDDVGIAVVTSD-PDRDWDWLKWLPHN 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 271 WDDER-----DQRYMADRhsgVHQLADHLYTLLhrrkmirKERGKKSPD----LPCYVVLLSERDIIEEEPLLPLilEDA 341
Cdd:TIGR03924 234 QHPTRfdaagPARLVYTS---LAELEAALAELL-------ADRGRFSPDdaasLPHLVVVVDGGDLPGWEDLIGE--SGL 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 342 EAVTTctIILASRKEYLPMH--CQLVVEAGKKqgsySKKTEQADVIHGSfVPDRMTREEAEISARYMAPLRLKRSSASDI 419
Cdd:TIGR03924 302 DGVTV--IDLGGSLPGLPDRrgLRLVVEADRL----DARTADGVEEFGV-APDQLSIAEAEALARRLARWRAATAGTVDA 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 420 PPLLP--LFDMLDVSRVEQLNVESRWACNRHPNTLPVPMGVRAGGKRVYINLHDKIErQGHGPHGLIAGTTGSGKSEVIQ 497
Cdd:TIGR03924 375 PLTGArdLLELLGIGDPATLDVDRLWRPRPGRDRLRVPIGVGDDGEPVELDLKESAE-GGMGPHGLCIGATGSGKSELLR 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 498 SIVASLASEFHPHDLAFMLIDYKGGGMSNTFNNLPHVVGTITNL--DQSLMERAKISLRAELVRRQKLLNDAGNLQHIDE 575
Cdd:TIGR03924 454 TLVLGLAATHSPEQLNLVLVDFKGGATFLGLEGLPHVSAVITNLadEAPLVDRMQDALAGEMNRRQELLRAAGNFANVAE 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 576 YYK-WLDSHHAEPLPHLVIIIDEFAQLKKEQPEFMDELISIAAIGRTLGVHLILATQKPAGVVDDKIWSNSRFRICLRVQ 654
Cdd:TIGR03924 534 YEKaRAAGADLPPLPALFVVVDEFSELLSQHPDFADLFVAIGRLGRSLGVHLLLASQRLDEGRLRGLESHLSYRIGLKTF 613
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 2518080910 655 SEGDSRDMIKIPNAAWITK-PGRGYFQVGSDEvFEEMQFAWSGAPY 699
Cdd:TIGR03924 614 SASESRAVLGVPDAYHLPStPGAGYLKVDTAE-PVRFRAAYVSGPY 658
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
764-1298 |
1.37e-60 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 218.71 E-value: 1.37e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 764 PWLPPLPELIELQE----ITSKGSLTQNQAHEGMTWepVVGLLDDLPNQKQVPLRI--SLHSGHYAIYGMPGLGKTTFVQ 837
Cdd:TIGR03925 20 VWLPPLPEPPALDDllprLDVDPWRVDYGQRGRLTV--PVGIVDRPFEQRQDPLVVdlSGAAGHVAIVGAPQSGKSTALR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 838 TLLMSLAeDNDSPW--HGYVIDM-GRMMREFKNLPQIGGVMTAEDDDRIKRLFRYLSKVLMQRREMIADAGVKTISAYR- 913
Cdd:TIGR03925 98 TLILALA-LTHTPEevQFYCLDFgGGGLASLADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHGIDSMAQYRa 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 914 RGTGQRIPQ-----VLVVIDGYLSFRNSYPDENEQLEILLREGAGLGITFVITANRITDIFEKVRSNISNAISFEMADPS 988
Cdd:TIGR03925 177 RRAAGRLPEdpfgdVFLVIDGWGTLRQDFEDLEDKVTDLAARGLAYGVHVVLTASRWSEIRPALRDLIGTRIELRLGDPM 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 989 DYYYAVGRPSRVPSGyPPGRALVKGQtppLEFQVALPVRGREESERAEQLKLRIQKIHNQYLGPEAPQIKPLPEVVTLSE 1068
Cdd:TIGR03925 257 DSEIDRRAAARVPAG-RPGRGLTPDG---LHMLIALPRLDGIASVDDLGTRGLVAVIRDVWGGPPAPPVRLLPARLPLSA 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1069 LLTEEDRLQEEtaiykVPVGLMTDDLSLFHISLREGPHFMVASPMEGGKSSFLMTFMLSLAYHHSPEQLNMYTIDTRYGE 1148
Cdd:TIGR03925 333 LPAGGGAPRLR-----VPLGLGESDLAPVYVDFAESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRRTL 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1149 HGL---GQLKDlpHVYKHAAREEELAPLIQEVYERV---------MKLSSDTCGPEIVLFIDDADTLAKQM-NDFTmkdQ 1215
Cdd:TIGR03925 408 LGAvpeDYLAG--YAATSAALTELIAALAALLERRLpgpdvtpqqLRARSWWSGPEIYVVVDDYDLVATGSgNPLA---P 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1216 LGVIVRQGRDRGVHVVLA------GVASDFPTFGADWvtdvKASQSGLLFGTlDPNDLSSFRIPYsessaasngLKVLPP 1289
Cdd:TIGR03925 483 LVELLPHARDIGLHVVVArrsggaARALMDPVLARLK----DLGAPGLLLSG-DRDEGPLLGGVR---------PRPLPP 548
|
....*....
gi 2518080910 1290 GQGYYVKRR 1298
Cdd:TIGR03925 549 GRGVLVTRG 557
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
452-634 |
2.87e-27 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 111.32 E-value: 2.87e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 452 LPVPMGVRAGGKRVYINLhdkierQGHGPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMsNTFNNL 531
Cdd:pfam01580 17 LPIALGKDISGNPEVFDL------KKMPVHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGEL-SAYEDI 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 532 PHVVGTITNLDQSLMERAKISLRAELVRRQKLLNDAG--------------NLQHIDEYYKWLDSHH--------AEPLP 589
Cdd:pfam01580 90 PHLLSVPVATDPKRALRALEWLVDEMERRYALFRALGvrsiagyngeiaedPLDGFGDVFLVIYGVHvmctagrwLEILP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2518080910 590 HLVIIIDEFAQLK----KEQPEFMDELIS-IAAIGRTLGVHLILATQKPA 634
Cdd:pfam01580 170 YLVVIVDERAELRlaapKDSEMRVEDAIVrLAQKGRAAGIHLLLATQRPS 219
|
|
| FtsK |
COG1674 |
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, ... |
452-660 |
2.72e-26 |
|
DNA segregation ATPase FtsK/SpoIIIE or related protein [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441280 [Multi-domain] Cd Length: 611 Bit Score: 115.79 E-value: 2.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 452 LPVPMGVRAGGKRVYINLhDKIerqghgPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKgggMS--NTFN 529
Cdd:COG1674 261 LPIALGKDISGEPVVADL-AKM------PHLLIAGATGSGKSVCINAMILSLLYKATPDEVRLILIDPK---MVelSVYN 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 530 NLPHVVG-TITNldqslMERAKISLR---AELVRRQKLLNDAGnLQHIDEY--------YKWLDSHHAEPLPHLVIIIDE 597
Cdd:COG1674 331 GIPHLLTpVVTD-----PKKAANALKwavREMERRYKLFAKAG-VRNIAGYnekvreakAKGEEEEGLEPLPYIVVIIDE 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2518080910 598 FAQL----KKEqpefMDELIS-IAAIGRTLGVHLILATQKP-AGVVDDKIWSNsrF--RICLRVQSEGDSR 660
Cdd:COG1674 405 LADLmmvaGKE----VEEAIArLAQKARAAGIHLILATQRPsVDVITGLIKAN--IpsRIAFAVSSKIDSR 469
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
448-763 |
3.33e-23 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 107.48 E-value: 3.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 448 HPNTLPVPMGVRAGGKRVYINLhdkierqGHGPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSnT 527
Cdd:PRK10263 986 NPSPLTVVLGKDIAGEPVVADL-------AKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS-V 1057
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 528 FNNLPHVVGTITnldqSLMERAKISLR---AELVRRQKLL------NDAGNLQHI-----------DEYYKWLDSHHA-- 585
Cdd:PRK10263 1058 YEGIPHLLTEVV----TDMKDAANALRwcvNEMERRYKLMsalgvrNLAGYNEKIaeadrmmrpipDPYWKPGDSMDAqh 1133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 586 ---EPLPHLVIIIDEFAQLKKEQPEFMDELIS-IAAIGRTLGVHLILATQKPA-GVVDDKIWSNSRFRICLRVQSEGDSR 660
Cdd:PRK10263 1134 pvlKKEPYIVVLVDEFADLMMTVGKKVEELIArLAQKARAAGIHLVLATQRPSvDVITGLIKANIPTRIAFTVSSKIDSR 1213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 661 ---------------DMI-KIPNAawiTKPGR--GYFqVGSDEVFEEMQfAWS--GAP-----YTSSEE--------DSA 707
Cdd:PRK10263 1214 tildqagaesllgmgDMLySGPNS---TLPVRvhGAF-VRDQEVHAVVQ-DWKarGRPqyvdgITSDSEseggaggfDGA 1288
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2518080910 708 SSL-PLMEVRLNgkrepLLTGERvtmmKSEGSSKQLQVFIDY-----IAETAEKQGIKRLQG 763
Cdd:PRK10263 1289 EELdPLFDQAVQ-----FVTEKR----KASISGVQRQFRIGYnraarIIEQMEAQGIVSEQG 1341
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
420-677 |
2.27e-20 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 96.99 E-value: 2.27e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 420 PPL---LPLFDMLDVSRVEQLNVesrwaCNRHPNTLPVPMGV-------RAGgkRVYINLHdkierqGHGPHGLIAGTTG 489
Cdd:TIGR03925 23 PPLpepPALDDLLPRLDVDPWRV-----DYGQRGRLTVPVGIvdrpfeqRQD--PLVVDLS------GAAGHVAIVGAPQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 490 SGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSNtFNNLPHVVGTITNLDQSLMERAKISLRAELVRRQKLLNDAGn 569
Cdd:TIGR03925 90 SGKSTALRTLILALALTHTPEEVQFYCLDFGGGGLAS-LADLPHVGGVAGRLDPERVRRTVAEVEGLLRRRERLFRTHG- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 570 lqhIDEYYKWLDSHHAEPLP-----HLVIIIDEFAQLKKEQPEFMDELISIAAIGRTLGVHLILATQKPAGV---VDDKI 641
Cdd:TIGR03925 168 ---IDSMAQYRARRAAGRLPedpfgDVFLVIDGWGTLRQDFEDLEDKVTDLAARGLAYGVHVVLTASRWSEIrpaLRDLI 244
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 2518080910 642 WSnsrfRICLR----VQSEGDSRDMIKIPNaawiTKPGRG 677
Cdd:TIGR03925 245 GT----RIELRlgdpMDSEIDRRAAARVPA----GRPGRG 276
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
1101-1180 |
1.48e-09 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 59.70 E-value: 1.48e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1101 LREGP-HFMVASPMEGGKSSFLMTFMLSLAYHHSPEQLNMYTIDTRYGEhgLGQLKDLPHVYKHAAREE------ELAPL 1173
Cdd:pfam01580 34 LKKMPvHLLIAGATGSGKSVALNTLILSLAYMHTPEEVQLYCIDPKMGE--LSAYEDIPHLLSVPVATDpkralrALEWL 111
|
....*..
gi 2518080910 1174 IQEVYER 1180
Cdd:pfam01580 112 VDEMERR 118
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
453-660 |
5.42e-09 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 60.01 E-value: 5.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 453 PVPMG-VRAGGKRVYINLHDKIERqghgpHGLIAGTTGSGKSeviqSIVASLASEFHPHDLAFMLIDYKG---------- 521
Cdd:COG0433 25 GILIGkLLSPGVPVYLDLDKLLNR-----HILILGATGSGKS----NTLQVLLEELSRAGVPVLVFDPHGeysglaepga 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 522 ----------------------------------------------------------GGMSNTFNNLPHVVGTITNLDQ 543
Cdd:COG0433 96 eradvgvfdpgagrplpinpwdlfataselgplllsrldlndtqrgvlrealrladdkGLLLLDLKDLIALLEEGEELGE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 544 SLMERAKISLRAeLVRR-QKLLNDAG----------------------NLQHID----------------EYYKWLDSHH 584
Cdd:COG0433 176 EYGNVSAASAGA-LLRRlESLESADGlfgepgldledllrtdgrvtviDLSGLPeelqstfvlwllrelfEARPEVGDAD 254
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2518080910 585 AEPLPhLVIIIDEfAQL--KKEQPEFMDELISIAAIGRTLGVHLILATQKPAGvVDDKIWSNSRFRICLRVQSEGDSR 660
Cdd:COG0433 255 DRKLP-LVLVIDE-AHLlaPAAPSALLEILERIAREGRKFGVGLILATQRPSD-IDEDVLSQLGTQIILRLFNPRDQK 329
|
|
| T7SS_EccC_a |
TIGR03924 |
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit ... |
1071-1234 |
6.19e-09 |
|
type VII secretion protein EccCa; This model represents the N-terminal domain or EccCa subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274858 [Multi-domain] Cd Length: 658 Bit Score: 60.37 E-value: 6.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1071 TEEDRLQeetaiykVPVGLmTDDLSLFHISLRE------GPHFMVASPMEGGKSSFLMTFMLSLAYHHSPEQLNMYTIDT 1144
Cdd:TIGR03924 404 PGRDRLR-------VPIGV-GDDGEPVELDLKEsaeggmGPHGLCIGATGSGKSELLRTLVLGLAATHSPEQLNLVLVDF 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 1145 RYGEHGLGqLKDLPHVykhAA----REEElAPLI--------------QEV------------YERVmKLSSDTCGPEIV 1194
Cdd:TIGR03924 476 KGGATFLG-LEGLPHV---SAvitnLADE-APLVdrmqdalagemnrrQELlraagnfanvaeYEKA-RAAGADLPPLPA 549
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2518080910 1195 LFI--DDADTLAKQMNDFT-MKDQLGvivRQGRDRGVHVVLAG 1234
Cdd:TIGR03924 550 LFVvvDEFSELLSQHPDFAdLFVAIG---RLGRSLGVHLLLAS 589
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
481-653 |
9.56e-09 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 55.30 E-value: 9.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 481 HGLIAGTTGSGKSeviQSIVASLASEFHPHDLAFMlIDYKGGGmsntFNNLPhvvgtitnlDQSLMERAKISLRAELVRR 560
Cdd:cd01127 1 NTLVLGTTGSGKT---TSIVIPLLDQAARGGSVII-TDPKGEL----FLVIP---------DRDDSFAALRALFFNQLFR 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 561 QkllndagnLQHIdeyykwLDSHHAEPLPHLVIIIDEFAQLKKeqpefMDELISIAAIGRTLGVHLILATQ------KPA 634
Cdd:cd01127 64 A--------LTEL------ASLSPGRLPRRVWFILDEFANLGR-----IPNLPNLLATGRKRGISVVLILQslaqleAVY 124
|
170 180
....*....|....*....|
gi 2518080910 635 GVVDDK-IWSNSRFRICLRV 653
Cdd:cd01127 125 GKDGAQtILGNCNTKLYLGT 144
|
|
| FtsK_SpoIIIE |
pfam01580 |
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from ... |
818-1009 |
1.82e-08 |
|
FtsK/SpoIIIE family; FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE, which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Pssm-ID: 279863 [Multi-domain] Cd Length: 219 Bit Score: 56.23 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 818 HSGHYAIYGMPGLGKTTFVQTLLMSLAEDNdSPWHG--YVIDMGRM-MREFKNLPQIGGVMTAEDDDRIKRLFRYLSKVL 894
Cdd:pfam01580 37 MPVHLLIAGATGSGKSVALNTLILSLAYMH-TPEEVqlYCIDPKMGeLSAYEDIPHLLSVPVATDPKRALRALEWLVDEM 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 895 MQRREMIADAGVKTISAYRrgtgQRIPQVLVVIDGYLSFrnsypdeneqleillregAGLGITFVITANRITDIFEKVRS 974
Cdd:pfam01580 116 ERRYALFRALGVRSIAGYN----GEIAEDPLDGFGDVFL------------------VIYGVHVMCTAGRWLEILPYLVV 173
|
170 180 190
....*....|....*....|....*....|....*....
gi 2518080910 975 NISNAISFEMADPSDYYYAV----GRPSRvpsgypPGRA 1009
Cdd:pfam01580 174 IVDERAELRLAAPKDSEMRVedaiVRLAQ------KGRA 206
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
571-662 |
2.01e-06 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 51.91 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 571 QHIDEYYKWLDSHHAEPLPhLVIIIDEFAQLKKeqpefMDELISIAAIGRTLGVHLILATQKPAGVVD-------DKIWS 643
Cdd:COG3505 230 QLIRALLRRAERSGRLPRP-VLLLLDEFANLGR-----LPSLETLLATGRGYGIRLVLILQSLAQLEAiygeegaETILG 303
|
90
....*....|....*....
gi 2518080910 644 NSRFRICLRVQSEGDSRDM 662
Cdd:COG3505 304 NCGTKIFLGVNDPETAEYL 322
|
|
| T7SS_EccC_b |
TIGR03925 |
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit ... |
448-629 |
1.94e-04 |
|
type VII secretion protein EccCb; This model represents the C-terminal domain or EccCb subunit of the type VII secretion protein EccC as found in the Actinobacteria. Type VII secretion is defined more broadly as including secretion systems for ESAT-6-like proteins in the Firmicutes as well as in the Actinobacteria, but this family does not show close homologs in the Firmicutes. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274859 [Multi-domain] Cd Length: 566 Bit Score: 45.75 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 448 HPNTLPVPMGVR-AGGKRVYINLHdkierqgHGPHGLIAGTTGSGKSEVIQSIVASLASEFHPHDLAFMLIDYKGGGMSN 526
Cdd:TIGR03925 338 GAPRLRVPLGLGeSDLAPVYVDFA-------ESPHLLIFGDSESGKTTLLRTIARGIVRRYSPDQARLVVVDYRRTLLGA 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 527 TFNNlpHVVGTITNLD--QSLMERAKISLRAEL----VRRQKLLNDagnlqhideyyKWLDShhaeplPHLVIIIDEFAQ 600
Cdd:TIGR03925 411 VPED--YLAGYAATSAalTELIAALAALLERRLpgpdVTPQQLRAR-----------SWWSG------PEIYVVVDDYDL 471
|
170 180
....*....|....*....|....*....
gi 2518080910 601 LKKEQPEFMDELISIAAIGRTLGVHLILA 629
Cdd:TIGR03925 472 VATGSGNPLAPLVELLPHARDIGLHVVVA 500
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
590-662 |
8.98e-04 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 40.71 E-value: 8.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 590 HLVIIIDEFAQLKKeqpefMDELISIAAIGRTLGVHLILATQKPAGVVD-------DKIWSNSRFRICLRVQSEGDSRDM 662
Cdd:pfam12696 1 PVLFVLDEFANLGK-----IPDLEKLISTGRSRGISLMLILQSIAQLEElygkdgaETILGNCNTKVFLGGGDEETAKYL 75
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
822-977 |
2.34e-03 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 41.05 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 822 YAIYGMPGLGKTTFVQTLLMSLAEDNDspwHGYVI----DMGRMMREFKNLpqiG-GVMTAEDDDRIK-------RLFRY 889
Cdd:COG0467 23 TLLSGPPGTGKTTLALQFLAEGLRRGE---KGLYVsfeeSPEQLLRRAESL---GlDLEEYIESGLLRiidlspeELGLD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 890 LSKVLMQRREMIADAGVKtisayrrgtgqripqvLVVIDGYLSFRNSYPDENEQLEI---LLREGAGLGITFVITANRIT 966
Cdd:COG0467 97 LEELLARLREAVEEFGAK----------------RVVIDSLSGLLLALPDPERLREFlhrLLRYLKKRGVTTLLTSETGG 160
|
170
....*....|.
gi 2518080910 967 DIFEKVRSNIS 977
Cdd:COG0467 161 LEDEATEGGLS 171
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
824-960 |
5.55e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 40.65 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 824 IYGMPGLGKTTFVQTLLMSLAedNDSPWHGYVIDMGRMMrefknlpqiggVMTAEDDD-----RIKRLFRYLS------- 891
Cdd:COG3598 18 LAGPPGTGKSFLALQLAAAVA--AGGPWLGRRVPPGKVL-----------YLAAEDDRgelrrRLKALGADLGlpfadld 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2518080910 892 ---KVLMQRREMIADAGVKTISAYRRGTGQRipqvLVVIDGYLSFRNSypDEN---------EQLEILLREgagLGITFV 959
Cdd:COG3598 85 grlRLLSLAGDLDDTDDLEALERAIEEEGPD----LVVIDPLARVFGG--DENdaeemraflNPLDRLAER---TGAAVL 155
|
.
gi 2518080910 960 I 960
Cdd:COG3598 156 L 156
|
|
| |
