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Conserved domains on  [gi|2501516714|gb|WGW14678|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Chroothece mobilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-100 4.09e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


:

Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 64.75  E-value: 4.09e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  19 SHSKLTAYECGYD----ANAPLDaspvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEW 94
Cdd:pfam00507  13 NPEKLSPYECGFDpvgdARLRFS----VRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAW 88


                  ....*.
gi 2501516714  95 SSGSLR 100
Cdd:pfam00507  89 KKGALE 94
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-100 4.09e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 64.75  E-value: 4.09e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  19 SHSKLTAYECGYD----ANAPLDaspvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEW 94
Cdd:pfam00507  13 NPEKLSPYECGFDpvgdARLRFS----VRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAW 88


                  ....*.
gi 2501516714  95 SSGSLR 100
Cdd:pfam00507  89 KKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-101 1.67e-13

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 60.91  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTASDRSHSKLTAYECGY----DANAPLDaspvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQIT 77
Cdd:COG0838    18 LALAMLLLSRLLGPKRPNPEKLSPYECGIepvgDARIRFS----VRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLI 93

                          90       100
                  ....*....|....*....|....
gi 2501516714  78 IILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-101 1.19e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 58.76  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   1 MISLALVGIYTSLTASDRSHSKLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVeQITIIL 80
Cdd:MTH00203   13 LLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL-SLLLAF 91

                          90       100
                  ....*....|....*....|.
gi 2501516714  81 VFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00203   92 LFLILLTLGLIYEWLQGGLEW 112
 
Name Accession Description Interval E-value
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-100 4.09e-15

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 64.75  E-value: 4.09e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  19 SHSKLTAYECGYD----ANAPLDaspvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEW 94
Cdd:pfam00507  13 NPEKLSPYECGFDpvgdARLRFS----VRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYAW 88


                  ....*.
gi 2501516714  95 SSGSLR 100
Cdd:pfam00507  89 KKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 2-101 1.67e-13

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 60.91  E-value: 1.67e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTASDRSHSKLTAYECGY----DANAPLDaspvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQIT 77
Cdd:COG0838    18 LALAMLLLSRLLGPKRPNPEKLSPYECGIepvgDARIRFS----VRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFGLI 93

                          90       100
                  ....*....|....*....|....
gi 2501516714  78 IILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:COG0838    94 EMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-101 1.19e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 58.76  E-value: 1.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   1 MISLALVGIYTSLTASDRSHSKLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVeQITIIL 80
Cdd:MTH00203   13 LLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSL-SLLLAF 91

                          90       100
                  ....*....|....*....|.
gi 2501516714  81 VFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00203   92 LFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 22-103 1.07e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 56.53  E-value: 1.07e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  22 KLTAYECGYDanaPLDASPV---VKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITII-LVFIWLLMLAYAIEWSSG 97
Cdd:MTH00042   34 KSSPYECGFD---PLNSARLpfsFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPIsLIFLIILTIGLVYEWVNG 110


                  ....*.
gi 2501516714  98 SLRWNE 103
Cdd:MTH00042  111 GLEWAE 116
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 2-101 2.27e-11

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 55.64  E-value: 2.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTASDRSHSKLTAYECGYDA--NAPLDASpvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITII 79
Cdd:PRK06602   21 LGILLLVAGKLLGPRAPDREKNSPYESGFEAfgDARMKFD--VRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEA 98

                          90       100
                  ....*....|....*....|..
gi 2501516714  80 LVFIWLLMLAYAIEWSSGSLRW 101
Cdd:PRK06602   99 MIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-101 2.31e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 55.55  E-value: 2.31e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   1 MISLALVGIYTSL---TASDRShsKLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQ-I 76
Cdd:MTH00161   11 LISIILMILASLLskkSIMDRE--KSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSwL 88

                          90       100
                  ....*....|....*....|....*
gi 2501516714  77 TIILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00161   89 ITSSFFILILLLGLYYEWNQGALEW 113
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 21-102 3.36e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.45  E-value: 3.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  21 SKLTAYECGYDAnAPLDASP---VVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEWSSG 97
Cdd:PRK07928   36 AKLEAYECGIEP-TPQPAGGgrfPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRG 114


                  ....*
gi 2501516714  98 SLRWN 102
Cdd:PRK07928  115 GLEWD 119
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-101 5.32e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 54.48  E-value: 5.32e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   1 MISLALVGIYTSLTASDRSHS-KLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDS-SVEQITI 78
Cdd:MTH00148   13 ILSPVLLLLGLVLSKRSYSDReKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSfSVWSLTS 92

                          90       100
                  ....*....|....*....|...
gi 2501516714  79 ILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00148   93 LFIFLLILILGLFHEWNEGSLDW 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 4-103 3.45e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 52.61  E-value: 3.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   4 LALVGIYTSLTASDrsHSKLTAYECGYD--ANAPLDASpvVKYYLVALLYLIFDIEIALVLPIlgvvpDSSVEQITIILV 81
Cdd:MTH00136   18 LAIVSFWLPQMTPD--HEKLSPYECGFDplGSARLPFS--LRFFLVAILFLLFDLEIALLLPL-----PWGDQLPSPLLT 88

                          90       100
                  ....*....|....*....|....*...
gi 2501516714  82 FIW------LLMLAYAIEWSSGSLRWNE 103
Cdd:MTH00136   89 FFWatavliLLTLGLIYEWLQGGLEWAE 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 22-103 3.99e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 52.25  E-value: 3.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  22 KLTAYECGYD--ANAPLDASpvVKYYLVALLYLIFDIEIALVLPILGVVPDSSVE-QITIILVFIWLLMLAYAIEWSSGS 98
Cdd:MTH00106   33 KASPYECGFDpmGSARLPFS--MKFFLVAITFLLFDLEIALLLPLPWASQTNNLNtMLTMALLLISLLALSLAYEWTQKG 110


                  ....*
gi 2501516714  99 LRWNE 103
Cdd:MTH00106  111 LEWTE 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 2-103 9.88e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 51.53  E-value: 9.88e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTASDRShsKLTAYECGYD--ANAPLDASpvVKYYLVALLYLIFDIEIALVLP----ILGVVPDSSVEQ 75
Cdd:MTH00069   14 LILITISFWLPLNNPDSE--KLSPYECGFDplGSARLPFS--IRFFLVAILFLLFDLEIALLLPtpwaSQLNTPTNTLFW 89

                          90       100
                  ....*....|....*....|....*...
gi 2501516714  76 ITIILVfiwLLMLAYAIEWSSGSLRWNE 103
Cdd:MTH00069   90 STLILI---LLTLGLIYEWIQGGLEWAE 114
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 2-102 1.17e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 51.47  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTASDRSHSKLtaYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILV 81
Cdd:MTH00030   25 ISFTLGNSRIGLTKPDSEKSSI--YECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYT 102

                          90       100
                  ....*....|....*....|.
gi 2501516714  82 FIWLLMLAYAIEWSSGSLRWN 102
Cdd:MTH00030  103 FLIVLAIGLAYEWIKGGLEWD 123
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 2-101 1.42e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 51.15  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   2 ISLALVGIYTSLTA-SDRSHSKLTAYECGYDanaPLDASPV---VKYYLVALLYLIFDIEIALVLPILGVVpDSSVEQIT 77
Cdd:MTH00202   14 ISSLLFLVSWMLSFrSLMDREKSSPFECGFD---PKESARLpfsMRFFLLAVIFLVFDIEIALLLPLPLVL-KSSWSKGG 89

                          90       100
                  ....*....|....*....|....*.
gi 2501516714  78 IILVFIWLLMLAYAI--EWSSGSLRW 101
Cdd:MTH00202   90 LLGGTIFLLILIGGLihEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 16-101 7.10e-09

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 49.09  E-value: 7.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  16 SDRSHSKLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQ-ITIILVFIWLLMLAYAIEW 94
Cdd:MTH00012   29 STADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTvVYTSILFLLILVIGLIHEW 108


                  ....*..
gi 2501516714  95 SSGSLRW 101
Cdd:MTH00012  109 REGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 22-101 1.60e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 48.17  E-value: 1.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  22 KLTAYECGYDanaPLDASPV---VKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEWSSGS 98
Cdd:MTH00055   38 KVSVYECGFD---PFESSRIpfsVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGG 114


                  ...
gi 2501516714  99 LRW 101
Cdd:MTH00055  115 LEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 22-101 2.08e-08

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 47.75  E-value: 2.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  22 KLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00018   33 KVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-101 2.94e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 47.57  E-value: 2.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714   1 MISLALVGIYTSLTASDRSHSKLTAYECGYD--ANAPLDASpvVKYYLVALLYLIFDIEIALVLPILGVVP-DSSVEQIT 77
Cdd:MTH00113   12 ALSTILTTLNFWLTQTKPDNEKLSPYECGFDplGSARLPFS--IRFFLVAILFLLFDLEIALLLPLPWAINlTTPTTTLT 89

                          90       100
                  ....*....|....*....|....
gi 2501516714  78 IILVFIWLLMLAYAIEWSSGSLRW 101
Cdd:MTH00113   90 WATIILTLLTLGLIYEWLQGGLEW 113
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
19-102 2.62e-05

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 40.11  E-value: 2.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  19 SHSKLTAYECGydaNAPLDASPV---VKYYLVALLYLIFDIEIALVLPILGVVPDSSVEQITIILVFIWLLMLAYAIEWS 95
Cdd:PRK07756   39 SAAKATTYESG---IEPFHDANIrfhARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWK 115


                  ....*..
gi 2501516714  96 SGSLRWN 102
Cdd:PRK07756  116 KKVLQWL 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 22-101 1.57e-03

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 35.35  E-value: 1.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2501516714  22 KLTAYECGYDANAPLDASPVVKYYLVALLYLIFDIEIALVLP------ILGVVpdSSVEqiTIILVFIWLLMLAYAieWS 95
Cdd:CHL00022   40 KLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPwamsfdVLGVS--AFIE--ALIFVLILIVGLVYA--WR 113


                  ....*.
gi 2501516714  96 SGSLRW 101
Cdd:CHL00022  114 KGALEW 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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