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Conserved domains on  [gi|2482671416|gb|WFP44748|]
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NADH dehydrogenase subunit 2 [Typhoptera quadrituberculata]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 6.78e-78

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 6.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   1 MILNPSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQl 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  81 tikMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLmkFNYFSTTIIITSI 160
Cdd:MTH00160   80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILSA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 161 FIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKF 240
Cdd:MTH00160  155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKF 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 241 CLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPNLKWNKTISYNNYAWI 320
Cdd:MTH00160  235 LLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314

                         330       340
                  ....*....|....*....|..
gi 2482671416 321 IISSTTvISFTGLLMPMFILYF 342
Cdd:MTH00160  315 LNFLSF-ISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 6.78e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 6.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   1 MILNPSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQl 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  81 tikMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLmkFNYFSTTIIITSI 160
Cdd:MTH00160   80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILSA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 161 FIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKF 240
Cdd:MTH00160  155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKF 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 241 CLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPNLKWNKTISYNNYAWI 320
Cdd:MTH00160  235 LLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314

                         330       340
                  ....*....|....*....|..
gi 2482671416 321 IISSTTvISFTGLLMPMFILYF 342
Cdd:MTH00160  315 LNFLSF-ISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-284 1.14e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.14e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  24 STSWLGAWVGLEINLLSFIPLITY-SKNSMSSEASLKYFLIQALASSILLFSFLL-------TQLTIKMNLLTH------ 89
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  90 QDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLIL-MTWQKIAPLMLSSYFLM------KFNYFSTTIIITSIFI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLylpsspFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 163 GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGEN----LWALYFIIYSFLSASVLLIFATFQIS-----YISQNYLLLS 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2482671416 234 PQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTT 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-342 1.06e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 83.63  E-value: 1.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   9 LFFSTLilGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLF----------SFLL 77
Cdd:COG1007   108 LLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRrSSEAALKYFLLGALSSGFLLYgisllygatgSLNL 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  78 TQLTIKMNLLTHQDFFMLLLSSSLLL----KMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLssyfLMKFNYFST 153
Cdd:COG1007   186 AGIAAALAAGGANSPLLLLGLVLVLAglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAA----LLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 154 TIIITSIFI------------GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLW----ALYFIIYSFLSASVLLIF 217
Cdd:COG1007   262 PGLAADWQLllavlavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 218 ATFQISYISQNYL-----LLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYI 292
Cdd:COG1007   342 LLLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2482671416 293 RLTFSAFLLNSPNlkwNKTISYNNYAWIIISSTTVISFTGLLMPMFILYF 342
Cdd:COG1007   422 RVVKAMYFDEPEE---EAPISAPPGLRVALVIAALLVLLLGIFPGPLLDL 468
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-340 2.23e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  15 ILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNS-MSSEASLKYFLIQALASSILLFSF--------------LLTQ 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSrFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  80 LTIKMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAP----LMLSSYFLMKFNYFSTTI 155
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavfLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 156 II----TSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMG--ENLWAL--YFIIYSFLSASVLLIFATFQ------ 221
Cdd:TIGR01770 272 LAiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGtlEGIKAVlfYIFIYALMSLGAFGVLSLLRsykdew 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 222 ISYISQNYLLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLL 301
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2482671416 302 NSPNLKWNKTISYNNYAWIIISSTTVISFtgLLMPMFIL 340
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFL--GLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-342 6.78e-78

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 241.65  E-value: 6.78e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   1 MILNPSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQl 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNM- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  81 tikMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLmkFNYFSTTIIITSI 160
Cdd:MTH00160   80 ---LNLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI--NNNFIIIIIILSA 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 161 FIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKF 240
Cdd:MTH00160  155 IIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKF 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 241 CLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPNLKWNKTISYNNYAWI 320
Cdd:MTH00160  235 LLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLI 314

                         330       340
                  ....*....|....*....|..
gi 2482671416 321 IISSTTvISFTGLLMPMFILYF 342
Cdd:MTH00160  315 LNFLSF-ISLFGLILSSLLFLL 335
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-338 5.56e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 193.50  E-value: 5.56e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   6 SKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQLTI--- 82
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTgqw 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  83 KMNLLTHQdFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLssyFLMKFNYFSTTIIITS--- 159
Cdd:MTH00112   85 DITQLTNP-TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTL---LLMTSNSLNPTLLLTLail 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 160 -IFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAM 238
Cdd:MTH00112  161 sTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 239 KFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPN-----LKWNKTIS 313
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNttnmmMKWRTKPK 320

                         330       340
                  ....*....|....*....|....*.
gi 2482671416 314 YNNYAWIIIS-STTVISFTGLLMPMF 338
Cdd:MTH00112  321 KNTLTATLTTlSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 8-338 2.09e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 181.66  E-value: 2.09e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   8 YLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLT-----QLTI 82
Cdd:MTH00070    7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINawftgEWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  83 kMNLLTHqdFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLMKFN-YFSTTIIITSIF 161
Cdd:MTH00070   87 -MNMQTP--LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNsNLLIIMGLLSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 162 IGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFC 241
Cdd:MTH00070  164 IGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSM 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 242 LYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPN-----LKW-NKTISYN 315
Cdd:MTH00070  244 MMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNtsnskLYWrFKNKTNN 323

                         330       340
                  ....*....|....*....|...
gi 2482671416 316 NYAWIIISSTTVISFTGLLMPMF 338
Cdd:MTH00070  324 LLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 12-340 2.85e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 176.19  E-value: 2.85e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  12 STLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQLTIKMNLLTHQ- 90
Cdd:MTH00105   11 LTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLt 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  91 -DFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPL--MLSSYFLMKFNyFSTTIIITSIFIGSMGG 167
Cdd:MTH00105   91 nPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLsiLYQISPSINPN-LLLTLAILSILIGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 168 LNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFCLYTLLL 247
Cdd:MTH00105  170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 248 SLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFL-----LNSPNLKWNKTISYNNyawIII 322
Cdd:MTH00105  250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLtmfpsTNNMKMKWQFENTKPM---TLL 326

                         330
                  ....*....|....*....
gi 2482671416 323 SSTTVISFTGL-LMPMFIL 340
Cdd:MTH00105  327 PTLIILSTMLLpLTPMLSI 345
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-340 7.24e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 174.30  E-value: 7.24e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   5 PSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLtqltikM 84
Cdd:MTH00144    4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLI------M 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  85 NLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFL--MKFNYFSTTIIITSIFI 162
Cdd:MTH00144   78 YNLSFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlYWLAYLLCVISVLSALV 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 163 GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISqNYLLLSPQPAMKFCL 242
Cdd:MTH00144  158 GSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMK-DLGSLKPSYKTGLSI 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 243 YTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFllnspnLKWNKTISYNNYAWIII 322
Cdd:MTH00144  237 ISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSF------LSSSKSKKSNSSKVLNS 310

                         330
                  ....*....|....*...
gi 2482671416 323 SSTTVISFTGLLMPMFIL 340
Cdd:MTH00144  311 SIISLNLLGGLLFLLLYL 328
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 9-342 6.17e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 170.11  E-value: 6.17e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   9 LFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLtQLTIKMNLL- 87
Cdd:MTH00041    8 FLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALI-QAWLSGSWSi 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  88 --THQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFL-MKFNYFSTTIIITSIFIGS 164
Cdd:MTH00041   87 ngPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 165 MGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFCLYT 244
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 245 LLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPNLK-----WNKTISYNNYAW 319
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNITVYGV 326

                         330       340
                  ....*....|....*....|...
gi 2482671416 320 IIISSTTVISFTGLLMPMFILYF 342
Cdd:MTH00041  327 ILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 9-343 9.40e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 167.07  E-value: 9.40e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   9 LFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQLTIKMNLLT 88
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  89 HQ--DFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLMKFNYFSTTIIITS-IFIGSM 165
Cdd:MTH00200   88 EMlgPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLsVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 166 GGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFCLYTL 245
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 246 LLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPN-----LKWNKTISYNNYAWI 320
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNqinmmSSWRTKSNSNLLVGL 327

                         330       340
                  ....*....|....*....|...
gi 2482671416 321 IISSTTVISftgLLMPMFILYFH 343
Cdd:MTH00200  328 LLLLSILGL---PLTPQLLFLFF 347
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-303 9.15e-48

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 163.80  E-value: 9.15e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   1 MILNPSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQL 80
Cdd:MTH00011    2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  81 TIKMNLLTHQDFFMlllsSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFL-MKFNYFSTTIIITS 159
Cdd:MTH00011   82 FPSLLKNITALMLL----VSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTsHNILPMMTSMAAMS 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 160 IFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMK 239
Cdd:MTH00011  158 ALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTS 237

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2482671416 240 FCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNS 303
Cdd:MTH00011  238 MSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSP 301
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-305 2.16e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 160.74  E-value: 2.16e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   9 LFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFS-----FLLTQLTIk 83
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFAsttnaWLTGQWDI- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  84 mNLLTHqDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLMKFNYFSTTIIITSIFIG 163
Cdd:MTH00135   87 -QQMSH-PLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTSTLVG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 164 SMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFCLY 243
Cdd:MTH00135  165 GWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTP 244

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2482671416 244 TLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPN 305
Cdd:MTH00135  245 LILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPN 306
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-322 4.52e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 156.76  E-value: 4.52e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   8 YLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQLTIKMNLL 87
Cdd:MTH00197    1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  88 THQDFFmlllsSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLMKFnYFSTTIIITSIFIGSMGG 167
Cdd:MTH00197   81 SVVLVI-----LGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSF-MGLLICSVLSSLIGGIGG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 168 LNQSSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSFLSASVLLIFATFQISYISQNYLLLSPQPAMKFCLYTLLL 247
Cdd:MTH00197  155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2482671416 248 SLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSPNLKWNKTISYNNYAWIII 322
Cdd:MTH00197  235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFIL 309
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-284 1.14e-23

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 98.54  E-value: 1.14e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  24 STSWLGAWVGLEINLLSFIPLITY-SKNSMSSEASLKYFLIQALASSILLFSFLL-------TQLTIKMNLLTH------ 89
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYwGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  90 QDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLIL-MTWQKIAPLMLSSYFLM------KFNYFSTTIIITSIFI 162
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLylpsspFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 163 GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGEN----LWALYFIIYSFLSASVLLIFATFQIS-----YISQNYLLLS 233
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIygiqAAIFHLLTHGLFSAGLFLCAGSVIYRrvhtrNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2482671416 234 PQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTT 284
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 14-316 8.69e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 88.93  E-value: 8.69e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  14 LILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLFSF-LLTQLT-------IKM 84
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGySAEAGLKYFVLGALSSGLFLFGCaLLCGTTgglhlsyINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  85 NLLTHQDFFMLLLSSSLLL-------KMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLSSYFLMKFNyFSTTIII 157
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLiivallfKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN-ILLIGGL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 158 TSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMG--ENLWA--LYFIIYSFLSASVLLIFATFQ--ISYISQNYLL 231
Cdd:MTH00196  161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGsfESIQAslVYLFIYIIMSICVFSIILALNvyKNLIIEFSGL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 232 LSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLT-FSAFLLNSPNLKWNK 310
Cdd:MTH00196  241 SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVkILFFQANSFLLISTK 320


                  ....*.
gi 2482671416 311 TISYNN 316
Cdd:MTH00196  321 ILKKEN 326
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 9-342 1.06e-17

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 83.63  E-value: 1.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   9 LFFSTLilGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLF----------SFLL 77
Cdd:COG1007   108 LLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAFRRDDRrSSEAALKYFLLGALSSGFLLYgisllygatgSLNL 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  78 TQLTIKMNLLTHQDFFMLLLSSSLLL----KMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLssyfLMKFNYFST 153
Cdd:COG1007   186 AGIAAALAAGGANSPLLLLGLVLVLAglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAA----LLRLLVEAF 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 154 TIIITSIFI------------GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLW----ALYFIIYSFLSASVLLIF 217
Cdd:COG1007   262 PGLAADWQLllavlavlsmtvGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaaLFYLLAYLFMNLGAFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 218 ATFQISYISQNYL-----LLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYI 292
Cdd:COG1007   342 LLLSRKGGEAEEIedlagLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|
gi 2482671416 293 RLTFSAFLLNSPNlkwNKTISYNNYAWIIISSTTVISFTGLLMPMFILYF 342
Cdd:COG1007   422 RVVKAMYFDEPEE---EAPISAPPGLRVALVIAALLVLLLGIFPGPLLDL 468
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 14-342 3.74e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 81.99  E-value: 3.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  14 LILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLFSF-LLTQLTIKM-----NL 86
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVALKRDSAySTEAGLKYFVLGAVSSGLFLFGCaLLYGLTGETsiqgiNS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  87 LTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLmlssYFLMKFNYFS---TTIIITSIFIG 163
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVF----SILVQIGPVTnvvLICAVLSIIYG 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 164 SMGGLNQSSLRKLMAYSSINHLGWMLSSLFMG--ENLWA--LYFIIYSFLSASVLLIFATFQIS--YISQNYLLLSPQPA 237
Cdd:MTH00199  262 AIGALNQTKIKRLLAYSGIGHMGFILFGVAIGsfESIQAslIYMIIYVIMSICSFSIILSLKLTkgLIVEVSGLSRKNPV 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 238 MKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRL-TFSAFLLNSPNLKWNKTIsyNN 316
Cdd:MTH00199  342 IALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVvQIIYFQADYSILIWQKVL--KK 419

                         330       340
                  ....*....|....*....|....*.
gi 2482671416 317 YAWIIISSTTVISFTgllmpMFILYF 342
Cdd:MTH00199  420 EERLDLSKSILIGVT-----FFIILF 440
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-340 2.23e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 79.61  E-value: 2.23e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  15 ILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNS-MSSEASLKYFLIQALASSILLFSF--------------LLTQ 79
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGLKRKSrFSTEAGLKYFILGAFSSGLLLFGIsliygftgslnfedLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  80 LTIKMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAP----LMLSSYFLMKFNYFSTTI 155
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavfLRLFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 156 II----TSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMG--ENLWAL--YFIIYSFLSASVLLIFATFQ------ 221
Cdd:TIGR01770 272 LAiiafLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGtlEGIKAVlfYIFIYALMSLGAFGVLSLLRsykdew 351

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 222 ISYISQNYLLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLL 301
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYFD 431

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2482671416 302 NSPNLKWNKTISYNNYAWIIISSTTVISFtgLLMPMFIL 340
Cdd:TIGR01770 432 KPERRIPSNPQSKAQSLLLSISALFILFL--GLFPSLIL 468
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
15-300 1.13e-15

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 77.55  E-value: 1.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  15 ILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLF----------SFLLTQLTIK 83
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRrSLEAAIKYFVLGALASGFLLYgmsllygatgSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  84 MNLLTHQDFFMLLLSSSLLL----KMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLssyfLMKFNYFSTTIIITS 159
Cdd:PRK05777  193 LADGSGNSLLLLFGLVFLLVglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAV----LLRLLVVAFGGLSED 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 160 I------------FIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENL----WALYFIIYSFLS----ASVLLIF-A 218
Cdd:PRK05777  269 WqqvlaiiaiasmLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTlgafGVISLLRrK 348

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 219 TFQISYISQNYLLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSA 298
Cdd:PRK05777  349 GGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLM 428


                  ..
gi 2482671416 299 FL 300
Cdd:PRK05777  429 YF 430
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 8-294 8.16e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.86  E-value: 8.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   8 YLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLL---------- 77
Cdd:COG0651   110 YPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLlygatgtlnm 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  78 TQLTIKMNLLTHQDFFMLLLSSSL--LLKMGAAPFHFWFPGTM-EGLSWLNCLI--LMTwqKIAPLMLSSYFLMKFNYFS 152
Cdd:COG0651   190 ADLAARLAELDPGLLLAAFALLLVgfGIKAALFPLHFWLPDAYpAAPSPVSALLsgLLT--KVGVYAILRVLTLLFGADP 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 153 TTIIITSIF--------IGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENL---WALYFIIYS-------FLSA-SV 213
Cdd:COG0651   268 ALFLGTLLLvlglltmlVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHalakallFLAAgAI 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 214 LLIFATFQISYISQnylLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIR 293
Cdd:COG0651   348 ERATGTRDLDKLGG---LGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                  .
gi 2482671416 294 L 294
Cdd:COG0651   425 I 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-294 1.44e-09

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 59.10  E-value: 1.44e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  16 LGTLISISSTSWLGAWVGLEINLLSFIPL---------ITYSKNSMSSEASLKYFLIQALASSILLF------------- 73
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFgcalyfgftgneg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  74 ---SFLLTQLTIKMNLLTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTMEGL-SWLNCLILMTWQKIAPLMLSSyfLMKFN 149
Cdd:MTH00198  279 mlgTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGApTPTTALIAIIPKFTVYILLTS--LVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 150 YFSTTIIITSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMG-----ENLW--ALYFIIYSFLSASVLLIFATFQI 222
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGtyeslQASWtyAVTYLVSALASFTVICTLEEFGT 436

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 223 SYISQ--------NY----------LLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLV------IQSLSNLNQTFMTT 278
Cdd:MTH00198  437 RTPTSrqrdgsfgNYnlvrrlvdltILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIlvgsikIAFSSSLSIYYLVA 516

                         330
                  ....*....|....*..
gi 2482671416 279 LM-ILTTLVTLFYYIRL 294
Cdd:MTH00198  517 LFaIICTCISAFYYIRI 533
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-299 6.18e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 47.57  E-value: 6.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  32 VGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQL---TIKMNLLTHQDFF-------MLLLSSSL 101
Cdd:PRK08375  133 VFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGvtgTLNMADLAGALAEnptvvtaFGFVLLAL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 102 LLKMGAAPFHFWFPGTM-EGLSWLNCLILMTWQKIAPLMLSSYFLMKFNYFSTTIIITSIFI----------GSMGGLNQ 170
Cdd:PRK08375  213 ALKAAVFPLHTWLPRAYpAAPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLavlallsmlvGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 171 SSLRKLMAYSSINHLGWMLSSLFMGENLWALYFIIYSF--------LSASVLLIFATFQISYISQNYLLLSPQPAMKFCL 242
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhalmkgaLFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2482671416 243 YTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAF 299
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAF 429
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 14-300 7.89e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.40  E-value: 7.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  14 LILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNS-MSSEASLKYFLIQALASSILLF--SFLLTQL-TIKMNLLTH 89
Cdd:PRK08376  130 LELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTwEAIEAGIKYMFVGSLASSMVLLgiALLYGQYgTLNMAYLAV 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  90 QDFF---------MLLLSSSLLLKMGAAPFHFWFP-GTMEGLSWLNCLILMTwqKIAPL-----MLSSYFLMKFN----- 149
Cdd:PRK08376  210 KMSEnptvvakiaLALFIAGLAMKSGAVPVHMWLPdAYPAAPSSISAMLLVI--KQAGLyalarVLFSIYGPAINlatvg 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 150 YFSTTIIITSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLW---------------ALYFIIYSFLSASVL 214
Cdd:PRK08376  288 WVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALL 367

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 215 LIFATFQISYISQNYL-----LLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNqTFMTTLMILTTLVTLF 289
Cdd:PRK08376  368 FLTAGAVIYETGTRNLnelggLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLA 446

                         330
                  ....*....|.
gi 2482671416 290 YYIRLTFSAFL 300
Cdd:PRK08376  447 SFVKVFHTAFF 457
ndhB CHL00049
NADH dehydrogenase subunit 2
 8-294 2.78e-05

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 45.77  E-value: 2.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   8 YLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSM-SSEASLKYFLIQALASSILLFSFLL--------T 78
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVrSNEATMKYLLMGGASSSILVYGFSWlyglsggeI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  79 QLTIKMNLLTHQDFFMLLLSSSLLL--------KMGAAPFHFWFPGTMEGLSWLNCLILMTWQKIAPLMLS--------S 142
Cdd:CHL00049  194 ELQEIVNGLINTQMYNSPGISIALIfitvgigfKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALAtrifdipfY 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 143 YFLMKFNYFSTTIIITSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGE--NLWA---LYFIIYSFLSASVLLIF 217
Cdd:CHL00049  274 FSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDsnDGYAsmiTYMLFYIFMNLGTFACI 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 218 ATFQISYISQNYL----LLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIR 293
Cdd:CHL00049  354 VLFGLRTGTDNIRdyagLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLK 433


                  .
gi 2482671416 294 L 294
Cdd:CHL00049  434 I 434
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
53-293 7.69e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.27  E-value: 7.69e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  53 SSEASLKYFLIQALASSILLF--SFLL------TQLT-IKMNLLTHQDFFMLLLSSSLL----LKMGAAPFHFWFPGTME 119
Cdd:PRK02504  159 SNEAALKYLLIGAASSAIFLYgsSLLYglsggsTQLSaIALALITSPSLGLALALVFVIagiaFKISAVPFHQWTPDVYE 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 120 GLSWLNCLILMTWQKIAPLMLSSYFLM--------KFNYFSTTIIITSIFIGSMGGLNQSSLRKLMAYSSINHLGWMLSS 191
Cdd:PRK02504  239 GSPTPVVAFLSVGSKAAGFALAIRLLVtafpsfdeQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIG 318

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 192 LFMG-ENLWA---LYFIIYSFLSASVLLIFATFQI----SYISQNYLLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWL 263
Cdd:PRK02504  319 LVAGtEAGYAsmvFYLLAYLFMNLGAFACVILFSLrtgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIY 398

                         250       260       270
                  ....*....|....*....|....*....|
gi 2482671416 264 VIQSLSNLNQTFMTTLMILTTLVTLFYYIR 293
Cdd:PRK02504  399 LFWAGWQAGLYLLVLVGLVTSVISIYYYIR 428
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 4-341 1.03e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 44.04  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416   4 NPSKYLFFSTLILGTLISISSTSWLGAWVGLEINLLSFIPLITYSKNSMSSEASLKYFLIQALASSILLFSFLLTQLTIK 83
Cdd:PRK06589  115 SSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKT 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416  84 MNL--------LTHQDFFMLLLSSSLLLKMGAAPFHFWFPGTM-----------------EGLSWLNCLILMTWQkiapL 138
Cdd:PRK06589  195 GNLdfvsgglfSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMvahypvsallhavivvkTGLFCIYKILLYIFG----L 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 139 MLSSYFLMKFNYFSTTIIITSIFIgSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLWA----LYFIIYSFLSASVL 214
Cdd:PRK06589  271 SYLQRIFAEFNWLIFIPIVSIFYS-SLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALgaaiLHLVSHSFAKICLF 349

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 215 L----IFATFQISYISQNYLLLSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQT----FMTTLMILTTLV 286
Cdd:PRK06589  350 YsmgsIYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPwlsiIVMLVVIASSIL 429

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2482671416 287 TLFYYIRLTFSAFLLN-SPNLKWNKTISYNNYAWIIISSTTVI--SFTGLLMPMFILY 341
Cdd:PRK06589  430 SALYLLKILSSIYKPSlSENSFITKSLPYLMQISVITCCCALTlfYFIQILIREFLAY 487
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
168-300 4.08e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.86  E-value: 4.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 168 LNQSSLRKLMAYSSINHLGWMLSSLFMGENL-------WALYFIIY-SFLSASVLLIFATFQISYISQNYLLLSPQPAMK 239
Cdd:PRK06277  285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLgivagifHAINHVIYkSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVA 364

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2482671416 240 FCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFL 300
Cdd:PRK06277  365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLIYL 425
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
163-304 6.55e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 6.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 163 GSMGGLNQSSLRKLMAYSSINHLGWMLSSLFMGENLW---ALYFIIYS--------FLSASVLLIFATFQISYISQnylL 231
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGingAIFYLVHDmvvktalfLIAGSLVRLTGYRSLQYLGG---L 362

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2482671416 232 LSPQPAMKFCLYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFLLNSP 304
Cdd:PRK12663  363 YRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAYWGDKD 435
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 170-300 9.22e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 37.64  E-value: 9.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2482671416 170 QSSLRKLMAYSSINHLGWMLSSLFMGENLW---ALYFIIYSFLSASVLLIFATFQISY-----ISQNYLLLSPQPAMKFC 241
Cdd:PRK12667  316 QKDVKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGVFIHAagtrdIDELAGLGRKMPIASFA 395

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2482671416 242 LYTLLLSLGGLPPFLGFLPKWLVIQSLSNLNQTFMTTLMILTTLVTLFYYIRLTFSAFL 300
Cdd:PRK12667  396 FLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFF 454
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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