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Conserved domains on  [gi|2421968589|gb|WBL34710|]
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flagellar biosynthesis protein FlhA [Sinirhodobacter sp. HNIBRBA609]

Protein Classification

flagellar biosynthesis protein FlhA( domain architecture ID 10003451)

flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus

CATH:  3.40.30.60
Gene Ontology:  GO:0044780|GO:0071978|GO:0009306

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
FlhA COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692 0e+00

Flagellar biosynthesis protein FlhA [Cell motility];


:

Pssm-ID: 440909 [Multi-domain]  Cd Length: 676  Bit Score: 843.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:COG1298     1 LAVPLGVIAILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSVFPTLLLITTLFRLSLNVASTRLILLEGH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 TGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:COG1298    81 EGTDAAGKVIEAFGEFVVGGNYVVGLVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:COG1298   161 RRRREEIQREADFYGAMDGASKFVRGDAIAGILITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLIS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREAMK 333
Cdd:COG1298   241 TAAGIIVTRAGSEGDLGEQLSGQLFANPKALYIAAGVLGLLGLIPGMPHLPFLLLAALLGGLAYRLKKRQKEEEAEEAAA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPPEPA---RRKSMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYR 409
Cdd:COG1298   321 AAEAEAAaepAEESVDDLLPVDPLELELGYGLIPLVDESQGGdLLDRIKGIRRQLAQELGFVVPPVRIRDNLQLKPNEYR 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 IRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRN 489
Cdd:COG1298   401 IKIKGVEVARGELRPDRLLAINPGGVTGELPGIPTKEPAFGLPAVWIDPEQREEAELLGYTVVDPSTVIATHLSEVIKRH 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 FARLMGLRALRRLLEETanlsdptrADANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-QSP 568
Cdd:COG1298   481 AAELLGRQEVQQLLDRL--------KKEYPKLVEELVPKLLSLGELQKVLQNLLRERVSIRDLRTILETLADYAPRtKDP 552
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGpADVALPPDKFNRLVANVSDKIARAGESGVF 648
Cdd:COG1298   553 DLLTEHVRQALGRQIVQQYAGPDGELPVITLDPELEQLLLESLQQTEQG-SYLALDPGLAQRLLQSLAEAVEKLEAQGEP 631
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....
gi 2421968589 649 PAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:COG1298   632 PVLLVSPQLRPYLRRLLERFLPDLPVLSYNEIPPDVEIESVGTV 675
 
Name Accession Description Interval E-value
FlhA COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692 0e+00

Flagellar biosynthesis protein FlhA [Cell motility];


Pssm-ID: 440909 [Multi-domain]  Cd Length: 676  Bit Score: 843.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:COG1298     1 LAVPLGVIAILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSVFPTLLLITTLFRLSLNVASTRLILLEGH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 TGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:COG1298    81 EGTDAAGKVIEAFGEFVVGGNYVVGLVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:COG1298   161 RRRREEIQREADFYGAMDGASKFVRGDAIAGILITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLIS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREAMK 333
Cdd:COG1298   241 TAAGIIVTRAGSEGDLGEQLSGQLFANPKALYIAAGVLGLLGLIPGMPHLPFLLLAALLGGLAYRLKKRQKEEEAEEAAA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPPEPA---RRKSMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYR 409
Cdd:COG1298   321 AAEAEAAaepAEESVDDLLPVDPLELELGYGLIPLVDESQGGdLLDRIKGIRRQLAQELGFVVPPVRIRDNLQLKPNEYR 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 IRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRN 489
Cdd:COG1298   401 IKIKGVEVARGELRPDRLLAINPGGVTGELPGIPTKEPAFGLPAVWIDPEQREEAELLGYTVVDPSTVIATHLSEVIKRH 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 FARLMGLRALRRLLEETanlsdptrADANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-QSP 568
Cdd:COG1298   481 AAELLGRQEVQQLLDRL--------KKEYPKLVEELVPKLLSLGELQKVLQNLLRERVSIRDLRTILETLADYAPRtKDP 552
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGpADVALPPDKFNRLVANVSDKIARAGESGVF 648
Cdd:COG1298   553 DLLTEHVRQALGRQIVQQYAGPDGELPVITLDPELEQLLLESLQQTEQG-SYLALDPGLAQRLLQSLAEAVEKLEAQGEP 631
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....
gi 2421968589 649 PAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:COG1298   632 PVLLVSPQLRPYLRRLLERFLPDLPVLSYNEIPPDVEIESVGTV 675
flhA PRK06012
flagellar type III secretion system protein FlhA;
1-692 0e+00

flagellar type III secretion system protein FlhA;


Pssm-ID: 235672 [Multi-domain]  Cd Length: 697  Bit Score: 841.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589   1 MPRVTLLAIFQPTILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSL 80
Cdd:PRK06012    8 RLPGNLKLLKWRDLAVAILVLAILAMMILPLPPFLLDLLLTFNIALSVLILLVALFIQRPLDFSAFPTLLLITTLLRLAL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  81 NVSSTKLIIGQGHTGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAID 160
Cdd:PRK06012   88 NVASTRLILLEGHEGTDAAGKVIEAFGHFVVGGNFVVGIVVFIILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAID 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 161 SDMNAGAIDHAEARARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVG 240
Cdd:PRK06012  168 ADLNAGLIDEEEAKKRRKELQQEADFYGAMDGASKFVKGDAIAGILITVINIIGGLIIGVVQHGMSFGEAAETYTLLTIG 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 241 DGLVSQIPAVIISIASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLR 320
Cdd:PRK06012  248 DGLVSQIPALLISTAAGIIVTRVSSDGDVGEQIVGQLFANPKALYIAAGVLFLLGLVPGMPHLPFLLLAGLLGFLAYRLR 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 321 RADQKRARREAMKMPPPEPARRK--SMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRL 397
Cdd:PRK06012  328 KREKKAAELAAEEAEEEEAAEPEeeSWDDVLPVDPLELEVGYGLIPLVDENQGGeLLDRIRSIRKKIAQELGFLVPPVRI 407
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 398 TDDGALPPGTYRIRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEV 477
Cdd:PRK06012  408 RDNLQLPPNEYRIKIKGVEVGSGELRPGRLLAMNPGGVDGELPGIPTKEPAFGLPAVWIDEALREQAQLLGYTVVDPSTV 487
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 478 LATHLLEVIKRNFARLMGLRALRRLLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVE 557
Cdd:PRK06012  488 VATHLTEVIKNHAAELLGRQEVQQLLDRLAK--------EYPKLVEELVPKVLSLGTLQKVLQNLLKERVSIRDLRTILE 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 558 AIAEVRGLQS-PEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYqLQTDRGPADVALPPDKFNRLVANVS 636
Cdd:PRK06012  560 TLADYAPITKdPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQS-LQGTGGGSYLALEPGLAERLLQSLQ 638
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2421968589 637 DKIARAGESGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:PRK06012  639 EALERQEMKGEPPVLLVSPALRPYLRRLLERFLPQLPVLSYNEIPDNIEIRIVGTV 694
FlhA TIGR01398
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
12-692 0e+00

flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273599 [Multi-domain]  Cd Length: 678  Bit Score: 759.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  12 PTILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQ 91
Cdd:TIGR01398   2 RDLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLIATLFRLSLNVASTRLILTH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  92 GHTGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHA 171
Cdd:TIGR01398  82 GHEGPNAAGKVIEAFGQFVVGGNYVIGLIVFIILIIVNFIVITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGLITEE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EARARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVI 251
Cdd:TIGR01398 162 EAKKRREELEQEADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALI 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 ISIASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAA-QLLRRADQKRARRE 330
Cdd:TIGR01398 242 ISTATGLIVTRASSEGSFGKAIVTQLGANPRALLIVAAVLGLLALVPGLPTFPFLFLAGALAFLAwYLRRRSKQEEEAAA 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 331 AMKMPPPEPAR--RKSMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGT 407
Cdd:TIGR01398 322 EAAKAQEEAAEeeEESINDILALDDLELELGYGLIPLVDDSQGGdLLDRIRSIRKQLAQEYGFVMPVIRIRDNLRLPPNE 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 408 YRIRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIK 487
Cdd:TIGR01398 402 YRIKIKGVEVARGELRPGKYLAMNPGNADGEIPGEETREPAFGLPAYWISEKNKEEAERLGYTVVDPATVLATHLSEVIK 481
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 488 RNFARLMGLRALRRLLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-Q 566
Cdd:TIGR01398 482 NNAAELLTRQEVQNLLDRLKE--------EYPKLVEELIPDKVPLGTIQKVLQLLLRERVSIRNLPTILETLADYAPItK 553
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 567 SPEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTyQLQTDRGPADVALPPDKFNRLVANVSDKIARAGESG 646
Cdd:TIGR01398 554 DPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAE-ALKRDGEGELLDLEPALLEELVRAVRKAVEKLANNG 632
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*.
gi 2421968589 647 VFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:TIGR01398 633 ERPVLLTSPRVRPYVRRILERFFPELPVLSYNEIPDNVRVETVGVV 678
FHIPEP pfam00771
FHIPEP family;
23-681 0e+00

FHIPEP family;


Pssm-ID: 459933  Cd Length: 645  Bit Score: 748.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  23 IIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGHTgtgAAGDV 102
Cdd:pfam00771   1 ILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSVFPTLLLITTLFRLALNVASTRLILLHGHE---AAGKV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 103 IEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEARARREREQA 182
Cdd:pfam00771  78 IEAFGQFVVGGNYVVGLVVFLILVIVQFIVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEARRRREELQR 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 183 ETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIISIASAILLSR 262
Cdd:pfam00771 158 EADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLISTAAGIIVTR 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 263 GGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREAMKMPPPEPArr 342
Cdd:pfam00771 238 VASEGNLGEEIVGQLFANPKALYIAAGVLLLLGLIPGLPTLPFLLLAALLGFLAYRLRRRKKKAAAEEAEAEEAAAAA-- 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 343 ksmgdILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYRIRIQGVEQARDR 421
Cdd:pfam00771 316 -----VLPVDPLELELGYGLIPLVDESQGGdLLDRIKGIRRQLALELGFVVPPIRIRDNLQLKPNEYRIKIKGVEVARGE 390
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 422 LRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRNFARLMGLRALRR 501
Cdd:pfam00771 391 LLPDHLLAMNPGGVLGEIPGIPTKEPAFGLPAVWIDEEQREEAELAGYTVVDPPTVIATHLTEVIKRHAAELLGRQEVQA 470
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 502 LLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEV-RGLQSPEAICEHVRQRLG 580
Cdd:pfam00771 471 LLDNLKK--------EYPKLVEELVPKLLSLGEIQKVLQNLLRERVSIRDLRTILETLADYaPKTKDPDLLTEYVRQALG 542
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 581 FQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGPADVALPPDKFNRLVANVSDKIARAGESGVFPAIITSTRRRRF 660
Cdd:pfam00771 543 RQICQQYAGEDGTLPVITLDPELEQLLRESLQQSEGQGSYLALDPDLAQRLLEALSEAVEKLEQQGEPPVLLTSPDIRRY 622
                         650       660
                  ....*....|....*....|.
gi 2421968589 661 LRTVLAAKGISAPVLSFEEIG 681
Cdd:pfam00771 623 LRRLLERFLPDLPVLSYNEIP 643
 
Name Accession Description Interval E-value
FlhA COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692 0e+00

Flagellar biosynthesis protein FlhA [Cell motility];


Pssm-ID: 440909 [Multi-domain]  Cd Length: 676  Bit Score: 843.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:COG1298     1 LAVPLGVIAILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSVFPTLLLITTLFRLSLNVASTRLILLEGH 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 TGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:COG1298    81 EGTDAAGKVIEAFGEFVVGGNYVVGLVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEA 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:COG1298   161 RRRREEIQREADFYGAMDGASKFVRGDAIAGILITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLIS 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREAMK 333
Cdd:COG1298   241 TAAGIIVTRAGSEGDLGEQLSGQLFANPKALYIAAGVLGLLGLIPGMPHLPFLLLAALLGGLAYRLKKRQKEEEAEEAAA 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPPEPA---RRKSMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYR 409
Cdd:COG1298   321 AAEAEAAaepAEESVDDLLPVDPLELELGYGLIPLVDESQGGdLLDRIKGIRRQLAQELGFVVPPVRIRDNLQLKPNEYR 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 IRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRN 489
Cdd:COG1298   401 IKIKGVEVARGELRPDRLLAINPGGVTGELPGIPTKEPAFGLPAVWIDPEQREEAELLGYTVVDPSTVIATHLSEVIKRH 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 FARLMGLRALRRLLEETanlsdptrADANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-QSP 568
Cdd:COG1298   481 AAELLGRQEVQQLLDRL--------KKEYPKLVEELVPKLLSLGELQKVLQNLLRERVSIRDLRTILETLADYAPRtKDP 552
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGpADVALPPDKFNRLVANVSDKIARAGESGVF 648
Cdd:COG1298   553 DLLTEHVRQALGRQIVQQYAGPDGELPVITLDPELEQLLLESLQQTEQG-SYLALDPGLAQRLLQSLAEAVEKLEAQGEP 631
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....
gi 2421968589 649 PAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:COG1298   632 PVLLVSPQLRPYLRRLLERFLPDLPVLSYNEIPPDVEIESVGTV 675
flhA PRK06012
flagellar type III secretion system protein FlhA;
1-692 0e+00

flagellar type III secretion system protein FlhA;


Pssm-ID: 235672 [Multi-domain]  Cd Length: 697  Bit Score: 841.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589   1 MPRVTLLAIFQPTILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSL 80
Cdd:PRK06012    8 RLPGNLKLLKWRDLAVAILVLAILAMMILPLPPFLLDLLLTFNIALSVLILLVALFIQRPLDFSAFPTLLLITTLLRLAL 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  81 NVSSTKLIIGQGHTGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAID 160
Cdd:PRK06012   88 NVASTRLILLEGHEGTDAAGKVIEAFGHFVVGGNFVVGIVVFIILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAID 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 161 SDMNAGAIDHAEARARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVG 240
Cdd:PRK06012  168 ADLNAGLIDEEEAKKRRKELQQEADFYGAMDGASKFVKGDAIAGILITVINIIGGLIIGVVQHGMSFGEAAETYTLLTIG 247
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 241 DGLVSQIPAVIISIASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLR 320
Cdd:PRK06012  248 DGLVSQIPALLISTAAGIIVTRVSSDGDVGEQIVGQLFANPKALYIAAGVLFLLGLVPGMPHLPFLLLAGLLGFLAYRLR 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 321 RADQKRARREAMKMPPPEPARRK--SMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRL 397
Cdd:PRK06012  328 KREKKAAELAAEEAEEEEAAEPEeeSWDDVLPVDPLELEVGYGLIPLVDENQGGeLLDRIRSIRKKIAQELGFLVPPVRI 407
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 398 TDDGALPPGTYRIRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEV 477
Cdd:PRK06012  408 RDNLQLPPNEYRIKIKGVEVGSGELRPGRLLAMNPGGVDGELPGIPTKEPAFGLPAVWIDEALREQAQLLGYTVVDPSTV 487
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 478 LATHLLEVIKRNFARLMGLRALRRLLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVE 557
Cdd:PRK06012  488 VATHLTEVIKNHAAELLGRQEVQQLLDRLAK--------EYPKLVEELVPKVLSLGTLQKVLQNLLKERVSIRDLRTILE 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 558 AIAEVRGLQS-PEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYqLQTDRGPADVALPPDKFNRLVANVS 636
Cdd:PRK06012  560 TLADYAPITKdPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQS-LQGTGGGSYLALEPGLAERLLQSLQ 638
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2421968589 637 DKIARAGESGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:PRK06012  639 EALERQEMKGEPPVLLVSPALRPYLRRLLERFLPQLPVLSYNEIPDNIEIRIVGTV 694
FlhA TIGR01398
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
12-692 0e+00

flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 273599 [Multi-domain]  Cd Length: 678  Bit Score: 759.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  12 PTILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQ 91
Cdd:TIGR01398   2 RDLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLIATLFRLSLNVASTRLILTH 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  92 GHTGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHA 171
Cdd:TIGR01398  82 GHEGPNAAGKVIEAFGQFVVGGNYVIGLIVFIILIIVNFIVITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGLITEE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EARARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVI 251
Cdd:TIGR01398 162 EAKKRREELEQEADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALI 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 ISIASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAA-QLLRRADQKRARRE 330
Cdd:TIGR01398 242 ISTATGLIVTRASSEGSFGKAIVTQLGANPRALLIVAAVLGLLALVPGLPTFPFLFLAGALAFLAwYLRRRSKQEEEAAA 321
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 331 AMKMPPPEPAR--RKSMGDILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGT 407
Cdd:TIGR01398 322 EAAKAQEEAAEeeEESINDILALDDLELELGYGLIPLVDDSQGGdLLDRIRSIRKQLAQEYGFVMPVIRIRDNLRLPPNE 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 408 YRIRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIK 487
Cdd:TIGR01398 402 YRIKIKGVEVARGELRPGKYLAMNPGNADGEIPGEETREPAFGLPAYWISEKNKEEAERLGYTVVDPATVLATHLSEVIK 481
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 488 RNFARLMGLRALRRLLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-Q 566
Cdd:TIGR01398 482 NNAAELLTRQEVQNLLDRLKE--------EYPKLVEELIPDKVPLGTIQKVLQLLLRERVSIRNLPTILETLADYAPItK 553
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 567 SPEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTyQLQTDRGPADVALPPDKFNRLVANVSDKIARAGESG 646
Cdd:TIGR01398 554 DPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAE-ALKRDGEGELLDLEPALLEELVRAVRKAVEKLANNG 632
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*.
gi 2421968589 647 VFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:TIGR01398 633 ERPVLLTSPRVRPYVRRILERFFPELPVLSYNEIPDNVRVETVGVV 678
FHIPEP pfam00771
FHIPEP family;
23-681 0e+00

FHIPEP family;


Pssm-ID: 459933  Cd Length: 645  Bit Score: 748.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  23 IIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGHTgtgAAGDV 102
Cdd:pfam00771   1 ILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSVFPTLLLITTLFRLALNVASTRLILLHGHE---AAGKV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 103 IEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEARARREREQA 182
Cdd:pfam00771  78 IEAFGQFVVGGNYVVGLVVFLILVIVQFIVITKGAERVAEVAARFTLDAMPGKQMAIDADLNAGLIDEEEARRRREELQR 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 183 ETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIISIASAILLSR 262
Cdd:pfam00771 158 EADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLISTAAGIIVTR 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 263 GGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREAMKMPPPEPArr 342
Cdd:pfam00771 238 VASEGNLGEEIVGQLFANPKALYIAAGVLLLLGLIPGLPTLPFLLLAALLGFLAYRLRRRKKKAAAEEAEAEEAAAAA-- 315
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 343 ksmgdILDVDDIHVEFAPDLVAMALDPATG-LDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYRIRIQGVEQARDR 421
Cdd:pfam00771 316 -----VLPVDPLELELGYGLIPLVDESQGGdLLDRIKGIRRQLALELGFVVPPIRIRDNLQLKPNEYRIKIKGVEVARGE 390
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 422 LRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRNFARLMGLRALRR 501
Cdd:pfam00771 391 LLPDHLLAMNPGGVLGEIPGIPTKEPAFGLPAVWIDEEQREEAELAGYTVVDPPTVIATHLTEVIKRHAAELLGRQEVQA 470
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 502 LLEETANlsdptradANRRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEV-RGLQSPEAICEHVRQRLG 580
Cdd:pfam00771 471 LLDNLKK--------EYPKLVEELVPKLLSLGEIQKVLQNLLRERVSIRDLRTILETLADYaPKTKDPDLLTEYVRQALG 542
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 581 FQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGPADVALPPDKFNRLVANVSDKIARAGESGVFPAIITSTRRRRF 660
Cdd:pfam00771 543 RQICQQYAGEDGTLPVITLDPELEQLLRESLQQSEGQGSYLALDPDLAQRLLEALSEAVEKLEQQGEPPVLLTSPDIRRY 622
                         650       660
                  ....*....|....*....|.
gi 2421968589 661 LRTVLAAKGISAPVLSFEEIG 681
Cdd:pfam00771 623 LRRLLERFLPDLPVLSYNEIP 643
flhA PRK12792
flagellar biosynthesis protein FlhA; Reviewed
14-680 2.81e-176

flagellar biosynthesis protein FlhA; Reviewed


Pssm-ID: 237205  Cd Length: 694  Bit Score: 519.29  E-value: 2.81e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:PRK12792   18 FGFAVGIVAILAVLFLPVPAVLIDIGLAFSIALSVLILMVALWIQRPLEFSAFPTVLLIATLLRLALNIATTRLILSNGQ 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 TGTGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:PRK12792   98 EGVDAAGHVIAGFSQFVMSGDFVIGLVVFAILITVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSAGLIDDKEA 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:PRK12792  178 QRRRRELEEESAFFGSMDGASKFVRGDAIASLIIIAVNIFGGIIIGVTRHGMPLGQAADVFTKLSVGDGLVSQIPALIVS 257
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLL--RRADQKRAR--R 329
Cdd:PRK12792  258 LAAGLLVSKGGTRGSAEQAVLGQLGAYPRALSVAALLMFVLAIVPGLPFLPFALLGGVMAFVAYTIprRRAARAAAEaaK 337
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 330 EAMKMPPPEPARRKSMGDILDVDDIHVEFAPDLVAMALDPATGLDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYR 409
Cdd:PRK12792  338 VKREEESAQAEAKDSVKEQLRTAEIELCLGKQLAAQLQGAHAELAHRVAKMRRKFAKQYGFVVPEIKLTDSLSLPPKTYQ 417
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 IRIQGVEQARDRLRPERVLALIADNRDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLEVIKRN 489
Cdd:PRK12792  418 IKIHGTVVATQELRPGELLVVVGDGPRPDVPGEEVREPAFGMKALWVPDAFANEVRRDGFEPVDNASVLLTHLSEVIRNN 497
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 FARLMGLRALRRLLEetanlsdptRADAN-RRILDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAEVRGL-QS 567
Cdd:PRK12792  498 LPQLLSYKDMRALLD---------RLDPEyKRLIDDICPSQISYSGLQAVLKLLLAERVSIRNLHLILEAVAEIAPHaRR 568
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 568 PEAICEHVRQRLGFQLVAEYrREDGTLPLLQLAPEWEDTFttYQLQTDRGPADVA---LPPDKFNRLVANVSDKIARAGE 644
Cdd:PRK12792  569 AEQIAEHVRMRIAQQICGDL-SDNGVLKVLRLGNRWDLAF--HQSLKRDAKGEVVefdIDPRLVEQFGTEASEAIRERMD 645
                         650       660       670
                  ....*....|....*....|....*....|....*.
gi 2421968589 645 SGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEI 680
Cdd:PRK12792  646 QGHQFVLVTAPEARPYVRMIIERLFPTLPVLSHLEI 681
EscV COG4789
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
14-681 1.77e-164

Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443818 [Multi-domain]  Cd Length: 688  Bit Score: 488.92  E-value: 1.77e-164
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:COG4789    11 LVLAALLVAIIFMMILPLPTYLVDILIALNITISVLLLMVAMYIPSPLAFSTFPSVLLITTLFRLALSISTTRLILLQAD 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 tgtgaAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:COG4789    91 -----AGHIIETFGNFVVGGNLVVGLVIFLIITVVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDADLRAGVIDADEA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:COG4789   166 RRRRALLEKESQLYGAMDGAMKFVKGDAIAGIIIILVNIIGGIAIGVLQHGMSASEALHTYSILTIGDGLVAQIPALLIS 245
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSRGGAKGSADM--ELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARREA 331
Cdd:COG4789   246 ITAGIIVTRVSGDEDSNLgrEIVSQLLAQPKALLIAAVLLLLFALIPGFPTLVFLLLAALLGGLGFKLLRRKRRAAAAAE 325
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 332 MKMPPPEPAR--RKSMGDILDVDDIH------VEFAPDLvAMALDPATgLDARIANMRNHVAASFGLILPEIRLTDDGAL 403
Cdd:COG4789   326 SEPLPALQAAgaKGSEAGLIDGDDFPptvpliLRLSPSL-APALEAEA-LNQEIRRLRNRLFEDLGVPLPGIHIRFNPGL 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 404 PPGTYRIRIQGVEQARDRLRPERVLALIADN--RDLLPAGEDVREPVYGAPARWVPAAAQEEAVLTGSTVVSPTEVLATH 481
Cdd:COG4789   404 PDDEYSILLNEVPVARGTLPPGHLLVRDDVDelEALGIPAEEGELPLGEGPSLWVPAEHAELLEKAGIKVRDAEDVLALH 483
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 482 LLEVIKRNFARLMGLRALRRLLE-----------ETANLSDPTR-ADANRRILdelipdkvpldlllavlrlllEERVSI 549
Cdd:COG4789   484 LSLVLRRHAAEFIGIQETRYLLDqmekkypelvkEVQRVLPLQRiAEVLQRLV---------------------EEGISI 542
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 550 RNLLLIVEAIAEVRGLQS-PEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGPAdVALPPDKF 628
Cdd:COG4789   543 RNLRLILEALIEWGPKEKdVVMLTEYVRIALKRYICHRYSGGQGTLPALLLDPEIEEMIRGAIRQTSAGSF-LALDPEQS 621
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2421968589 629 NRLVANVSDKIARAGESGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIG 681
Cdd:COG4789   622 QAILEQLRQALGPLPPGGQDPVLLTSMDIRRFVRKLIEREFPDLPVLSYQELT 674
hrcV TIGR01399
type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
12-692 2.17e-139

type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 273600 [Multi-domain]  Cd Length: 677  Bit Score: 424.07  E-value: 2.17e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  12 PTILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQ 91
Cdd:TIGR01399   3 SDLVLALLLLAIISMMILPLPTLLVDILIAINITISVLLLMIAIYIPRPLALSTFPSVLLITTLFRLALSISTTRLILLH 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  92 GHtgtgaAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHA 171
Cdd:TIGR01399  83 AD-----AGNIIEAFGQFVVGGNLAVGLVIFLIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDADLRAGVIDAD 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EARARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVI 251
Cdd:TIGR01399 158 EARRRRSTLEKESQLYGAMDGAMKFVKGDAIAGIIIVLINIIGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPALL 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 ISIASAILLSRGGAKGSADM--ELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRADQKRARR 329
Cdd:TIGR01399 238 ISVTAGIIVTRVPGEAERNLgrEIGHQLTSQPRALLLAAVLLLGFALIPGFPLLVFALLAVLLAAAGYLLSRRKRSRAKA 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 330 EAMKMPPPEPARRKSMGDILDVDD------IHVEFAPDLVAMALDPAtgLDARIANMRNHVAASFGLILPEIRLTDDGAL 403
Cdd:TIGR01399 318 NKAQASGAVASAPGAAAPIKNLDPfaeacpLILRLSPDLQSSADKDT--LDQEIERMRWALFEDLGIPLPGIIIRVGDSL 395
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 404 PPGTYRIRIQGVEQARDRLRPervlaliadNRDLLPAGEDVREpVYGAPAR------------WVPAAAQEEAVLTGSTV 471
Cdd:TIGR01399 396 PDNEFRILLYEVPVLRDTIPP---------GHVALNDGVDNIE-VAGIPAIsgkrwpgesqrvWVTEEGAEKLQGAGLGY 465
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 472 VSPTEVLATHLLEVIKRNFARLMGLRALRRLLE-----------ETANLSDPTR-ADANRRILdelipdkvpldlllavl 539
Cdd:TIGR01399 466 FSDSQVITHRLKATLLRNAQEFIGIQETRYLLDqmereypelvkEVQRVLPLQRiAEVLQRLV----------------- 528
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 540 rlllEERVSIRNLLLIVEAIAEvRGLQSPEAI--CEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRG 617
Cdd:TIGR01399 529 ----SEQVSIRNLRLILETLIE-WAQREKDVVmlTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIRGAIRQTSTG 603
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2421968589 618 PAdVALPPDKFNRLVANVSDKIARAGESGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:TIGR01399 604 TY-LALDPDDSEQLLDQIRQAVGDLPRAPSQPVLLTSMDIRRYVRKMIESEFPDLPVLSYQELGEEIEVQVLGRI 677
PRK12720 PRK12720
EscV/YscV/HrcV family type III secretion system export apparatus protein;
14-692 9.85e-119

EscV/YscV/HrcV family type III secretion system export apparatus protein;


Pssm-ID: 183699 [Multi-domain]  Cd Length: 675  Bit Score: 370.20  E-value: 9.85e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  14 ILLALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQgH 93
Cdd:PRK12720   17 IVLAVMLLVAVFMMILPLPTWMVDILIAINLMFSVILLMIAIYLRDPLEFSVFPSLLLITTLYRLALTISTSRLVLLQ-H 95
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 TgtgaAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:PRK12720   96 D----AGEIVDAFGKFVVGGNLAVGLIVFTIITIVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGVIDADEA 171
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:PRK12720  172 RRLRQHVQKESRLLGAMDGAMKFVKGDAIAGIIVILVNIIGGIIIGVMQHDMSASEAVNTYAVLSIGDGLCGQIPSLLIS 251
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSR--GGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAAQLLRRadqKRARREA 331
Cdd:PRK12720  252 ITAGIIVTRvpGEKRQNLANELSSQIGRQPQALWLAAVVLMLFALIPGFPFITFAFLAALVAAPAILLRR---KKSVVSA 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 332 MKMPPPEPARRKSMGDIL-DVDDIHVEFAPDLvamaldPATGLDARIANMRNHVAASFGLILPEIRLTDDGALPPGTYRI 410
Cdd:PRK12720  329 NGVEAGGSEEGPEGDSMVpGACPLMLRLAPTL------HSADLIRDIDALRWFLFEDLGVPLPEVNIEVDPELTEKTLTV 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 411 RI------QGVEQARDRLRPERVLALIADNRDLLPAGedvrepvyGAPARWVPAAAQEEAVLTGSTVVSPTEVLATHLLE 484
Cdd:PRK12720  403 LLyqepvlSLSLPPQALLLLIGPDASLVGDSQTLPNG--------MGQICWLTKDQAEQAQGFGLDVFAGSQRISALLKC 474
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 485 VIKRNFARLMGLRALRRLLeetanlsdptraDANRRILDELIPD---KVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAE 561
Cdd:PRK12720  475 VLLRYMGEFIGVQETRYLM------------DAMEKRYGELVKElqrQLPVGKIAEILQRLVSERVSIRDLRTIFGTLVE 542
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 562 -VRGLQSPEAICEHVRQRLGFQLVAEYRREDGTLPLLQLAPEWEDTFTTYQLQTDRGpADVALPPDKFNRLVANVSDKIA 640
Cdd:PRK12720  543 wAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLIRESIRQTSAG-TYSALSSRHSTQILQLIEQALK 621
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2421968589 641 RAGESgvfpAIITSTRRRRFLRTVLAAKGISAPVLSFEEIGIDAKPAMVGVV 692
Cdd:PRK12720  622 QSQKL----VLVTSVDVRRFLRKIIERTLFDLPVLSWQELGDEAEIKVVGSI 669
PRK15337 PRK15337
EscV/YscV/HrcV family type III secretion system export apparatus protein;
15-680 5.64e-95

EscV/YscV/HrcV family type III secretion system export apparatus protein;


Pssm-ID: 237946 [Multi-domain]  Cd Length: 686  Bit Score: 308.46  E-value: 5.64e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  15 LLALALMA-IIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGQGH 93
Cdd:PRK15337   15 LIILVLMVmIIAMLIIPLPTYLVDFLIGLNIVLAILVFMGSFYIDRILSFSTFPSILLITTLFRLALSISTSRLILLDAD 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  94 tgtgaAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEA 173
Cdd:PRK15337   95 -----AGEIITTFGQFVIGDSLVVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADGV 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RARREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHGMPIGRALETYAILTVGDGLVSQIPAVIIS 253
Cdd:PRK15337  170 KERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMTQHGMDLSSALSTYTILTIGDGLVAQIPALLIS 249
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 IASAILLSR-GGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPFLPFMVGALVLGGAaqLLRRADQKRARREAM 332
Cdd:PRK15337  250 ISAGFIVTRvNGDSDNLGRNIMSQLLSNPFVLVVTAILALSIGLLPGFPLPVFLLLAVVLGVL--FYFKKFRKKKKSAAE 327
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 333 KMPPPEPARR-------KSMGDILDVDDIHVEFAPDLVAM------ALDPAtGLDARIanmRNHVAASFGLILPEIRLTD 399
Cdd:PRK15337  328 PDTSGGEAPLdidekagSSLGLIGDLDKVIPETVPLILLVpearrpDLEKE-NLAERL---RSQFFIDYGVRLPDILLRY 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 400 DGALPPGTYRIRIQGVEQARDRLRPERVLALIaDNRDLLPAGEDVREPV-YGAPARWVPAAAQEEAVLTGSTVVSPTEVL 478
Cdd:PRK15337  404 SEGLDDNSIVVLINEIRAAQFTIYFDLHRVVN-YSDELVSLGINPTIIDsGGEQYYWVPHEDTEKLAKLGYVLRSAIDEL 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 479 ATHLLEVIKRNFARLMGLRALRRLLEETAN-----LSDPTRADANRRILDELipdkvpldlllavlRLLLEERVSIRNLL 553
Cdd:PRK15337  483 YHCLSVLLLHNINEFFGIQETKHLLDQLEKkypdlLKEVYRHATVQRISEVL--------------QRLLSERISIRNMK 548
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 554 LIVEAIAE-VRGLQSPEAICEHVRQRLGFQLVAEYRReDGTLPLLQLAPEWEDTFTTYQLQTDRGpADVALPPDKFNRLV 632
Cdd:PRK15337  549 LIMEALALwAPREKDVIMLVEHVRGALARYICHKFAA-GGELRAVVLSAEVEDAIRKGIRQTSGG-TFLNLDPAESENLM 626
                         650       660       670       680
                  ....*....|....*....|....*....|....*....|....*...
gi 2421968589 633 ANVSDKIARAGESGVFPAIITSTRRRRFLRTVLAAKGISAPVLSFEEI 680
Cdd:PRK15337  627 DLLTLALDDLGIAHRDIVLLVSVDIRRFVKKLIEGRFPELEVLSFGEI 674
PRK05910 PRK05910
type III secretion system protein; Validated
16-665 5.78e-50

type III secretion system protein; Validated


Pssm-ID: 168293  Cd Length: 584  Bit Score: 183.84  E-value: 5.78e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  16 LALALMAIIVMMILPVPAWVLDVGLAASFAIAILIFTVTLFIERPLDFSAFPTVLLASLMLRLSLNVSSTKLIIGqghtg 95
Cdd:PRK05910   12 MVAIPLCILFTLIFPLPQWLLDFGLCINFALSLSIVFWVFSLRSSASARLFPSLFLYLCLLRLGLNLASTRWILS----- 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589  96 TGAAGDVIEGFANFIMSGSVLIGLVVFGVILIVNFIVITKGAGRMAEVGARFALDAMPGKQLAIDSDMNAGAIDHAEARA 175
Cdd:PRK05910   87 SGWASPLIFSLGNFFSLGSLPAALTACLLLFLVNFLVITKGSERIAEVRARFSLEALPGKQMSLDADLVSGRASYSRVSK 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 176 RREREQAETTFFGSLDGASKFVKGDAVAGLLITLLNLVMGLIIGTAVHgmpigRALETYAILTVGDGLVSQIPAVIISIA 255
Cdd:PRK05910  167 QKNSLLEESDFFSAMEGVFRFVKGDAIMSCILLGVNILAATFLGRATG-----YAVGDLWLTVLGDALVSQVPALLTSCA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 256 SAILLSRGGAKGSADMELFRQLGKYPPALMTVGVLMALFALVPGLPflpfmvGALVLGGAAQLLrradqkrarreaMKMP 335
Cdd:PRK05910  242 AATLISKVGEKESLLQHLLDYYEQSRQHFRFIALLLCSLACIPGAP------KAPILGFSVLLF------------LAYK 303
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 336 PPEPARrksmgdildvDDIHVEFAPDLVAMAL-DPATGLDARI-ANMRNHVAASFGLILPE---IRLTDDGAlppgtyRI 410
Cdd:PRK05910  304 NPSSGE----------TLLFQKERFEFVELALpDEGVGNPANLyRAAREEIFQELGVVFPEeivVRHVESSP------RL 367
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 411 RIQGVEQARDRLRPERVLALIadnRDLLPagedvrepvygaparwvpaaaqeeavltgstvvsptevlathllEVIKRNF 490
Cdd:PRK05910  368 IFSGQEVYLRELSCPAILPSL---RNLAP--------------------------------------------EAISERF 400
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 491 arlmgLRALRRLLEETANLSdptradanrriLDELIPDKVPLDLLLAVLRLLLEERVSIRNLLLIVEAIAeVRGLQ--SP 568
Cdd:PRK05910  401 -----VKRLVEEFQEVAGIS-----------IEEIIPKKISENSLVFLLRALVRERVSLHLFPKILEAIA-VYGSQgkSS 463
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAICEHVRQRLGFQL-VAEYRREDgTLPLLQLAPEWEDTFTTYQLQTDrgpadvalpPDKFNRLVANVSDKIARAGESGv 647
Cdd:PRK05910  464 EELVEKVRKYLGKQIgRSLWNRQD-TLEVITIDSHVEQFIRDSYSKSN---------PDMNEKVVAQVKSLLERSGEGN- 532
                         650
                  ....*....|....*...
gi 2421968589 648 FPAIITSTRRRRFLRTVL 665
Cdd:PRK05910  533 FRAIVTGCETRFELKKMV 550
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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