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Concise Results
Standard Results
Full Results
flagellar biosynthesis protein FlhA [Sinirhodobacter sp. HNIBRBA609]
Protein Classification
flagellar biosynthesis protein FlhA ( domain architecture ID 10003451 )
flagellar biosynthesis protein FlhA is required for formation of the rod structure of the flagellar apparatus
List of domain hits
Name
Accession
Description
Interval
E-value
FlhA
COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
:Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 843.17
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 ILLA L ALM AI IV MMILP V P AWV LD VG LA ASF A IAI LI FT V T L F I E RPLDFS A FPT V LL ASLML RLSLNV S ST K LI IGQ GH 93
Cdd:COG1298 1 LAVP L GVI AI LA MMILP L P PFL LD LL LA FNI A LSL LI LL V A L Y I K RPLDFS V FPT L LL ITTLF RLSLNV A ST R LI LLE GH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 T GT G AAG D VIE G F AN F IMS G SVLI GLVVF GVIL I V NF I VITKGAGR M AEV G ARF A LDAMPGKQ L AID S D M NAG A ID HA EA 173
Cdd:COG1298 81 E GT D AAG K VIE A F GE F VVG G NYVV GLVVF LILV I I NF V VITKGAGR I AEV A ARF T LDAMPGKQ M AID A D L NAG L ID EE EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 R A RRE RE Q A E TT F F G SL DGASKFV K GDA V AG L LITL L N LVM GLIIG TAV HGM PI G R A LE TY AI LT V GDGLVSQIPA VI IS 253
Cdd:COG1298 161 R R RRE EI Q R E AD F Y G AM DGASKFV R GDA I AG I LITL I N IIG GLIIG VLQ HGM SF G E A AQ TY TL LT I GDGLVSQIPA LL IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I A SA I LLS R G G AK G SADME L FR QL GKY P P AL MTVGVLMA L FA L V PG L P F LPF MVG A LV LGG A A QL L RRADQKRARR EA MK 333
Cdd:COG1298 241 T A AG I IVT R A G SE G DLGEQ L SG QL FAN P K AL YIAAGVLG L LG L I PG M P H LPF LLL A AL LGG L A YR L KKRQKEEEAE EA AA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPP E P A --- RRK S MG D I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P EI R LT D DGA L P P GT YR 409
Cdd:COG1298 321 AAEA E A A aep AEE S VD D L L P VD PLEL E LGYG L IPLVDESQG G d L LD RI KGI R RQL A QEL G FVV P PV R IR D NLQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 I R I Q GVE Q AR DR LRP E R V LA LIADNRDLLPA G EDVR EP VY G A PA R W VPAAAQ EEA V L T G S TVV S P TE V L ATHL L EVIKR N 489
Cdd:COG1298 401 I K I K GVE V AR GE LRP D R L LA INPGGVTGELP G IPTK EP AF G L PA V W IDPEQR EEA E L L G Y TVV D P ST V I ATHL S EVIKR H 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 F A R L M G LRALRR LL EET anlsdptr ADANRRILD EL I P DKVP L DL L LA VL RL LL E ERVSIR N L LL I V E AI A EVRGL - QS P 568
Cdd:COG1298 481 A A E L L G RQEVQQ LL DRL -------- KKEYPKLVE EL V P KLLS L GE L QK VL QN LL R ERVSIR D L RT I L E TL A DYAPR t KD P 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAIC EHVRQ R LG F Q L V AE Y RRE DG T LP LLQ L A PE W E DTFTTYQL QT DR G p ADV AL P P DKFN RL VANVSDKIARAGES G VF 648
Cdd:COG1298 553 DLLT EHVRQ A LG R Q I V QQ Y AGP DG E LP VIT L D PE L E QLLLESLQ QT EQ G - SYL AL D P GLAQ RL LQSLAEAVEKLEAQ G EP 631
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2421968589 649 P AIIT S TRR R RF LR TV L AAKGISA PVLS FE EI GI D AKPAM VG V V 692
Cdd:COG1298 632 P VLLV S PQL R PY LR RL L ERFLPDL PVLS YN EI PP D VEIES VG T V 675
Name
Accession
Description
Interval
E-value
FlhA
COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 843.17
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 ILLA L ALM AI IV MMILP V P AWV LD VG LA ASF A IAI LI FT V T L F I E RPLDFS A FPT V LL ASLML RLSLNV S ST K LI IGQ GH 93
Cdd:COG1298 1 LAVP L GVI AI LA MMILP L P PFL LD LL LA FNI A LSL LI LL V A L Y I K RPLDFS V FPT L LL ITTLF RLSLNV A ST R LI LLE GH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 T GT G AAG D VIE G F AN F IMS G SVLI GLVVF GVIL I V NF I VITKGAGR M AEV G ARF A LDAMPGKQ L AID S D M NAG A ID HA EA 173
Cdd:COG1298 81 E GT D AAG K VIE A F GE F VVG G NYVV GLVVF LILV I I NF V VITKGAGR I AEV A ARF T LDAMPGKQ M AID A D L NAG L ID EE EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 R A RRE RE Q A E TT F F G SL DGASKFV K GDA V AG L LITL L N LVM GLIIG TAV HGM PI G R A LE TY AI LT V GDGLVSQIPA VI IS 253
Cdd:COG1298 161 R R RRE EI Q R E AD F Y G AM DGASKFV R GDA I AG I LITL I N IIG GLIIG VLQ HGM SF G E A AQ TY TL LT I GDGLVSQIPA LL IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I A SA I LLS R G G AK G SADME L FR QL GKY P P AL MTVGVLMA L FA L V PG L P F LPF MVG A LV LGG A A QL L RRADQKRARR EA MK 333
Cdd:COG1298 241 T A AG I IVT R A G SE G DLGEQ L SG QL FAN P K AL YIAAGVLG L LG L I PG M P H LPF LLL A AL LGG L A YR L KKRQKEEEAE EA AA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPP E P A --- RRK S MG D I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P EI R LT D DGA L P P GT YR 409
Cdd:COG1298 321 AAEA E A A aep AEE S VD D L L P VD PLEL E LGYG L IPLVDESQG G d L LD RI KGI R RQL A QEL G FVV P PV R IR D NLQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 I R I Q GVE Q AR DR LRP E R V LA LIADNRDLLPA G EDVR EP VY G A PA R W VPAAAQ EEA V L T G S TVV S P TE V L ATHL L EVIKR N 489
Cdd:COG1298 401 I K I K GVE V AR GE LRP D R L LA INPGGVTGELP G IPTK EP AF G L PA V W IDPEQR EEA E L L G Y TVV D P ST V I ATHL S EVIKR H 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 F A R L M G LRALRR LL EET anlsdptr ADANRRILD EL I P DKVP L DL L LA VL RL LL E ERVSIR N L LL I V E AI A EVRGL - QS P 568
Cdd:COG1298 481 A A E L L G RQEVQQ LL DRL -------- KKEYPKLVE EL V P KLLS L GE L QK VL QN LL R ERVSIR D L RT I L E TL A DYAPR t KD P 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAIC EHVRQ R LG F Q L V AE Y RRE DG T LP LLQ L A PE W E DTFTTYQL QT DR G p ADV AL P P DKFN RL VANVSDKIARAGES G VF 648
Cdd:COG1298 553 DLLT EHVRQ A LG R Q I V QQ Y AGP DG E LP VIT L D PE L E QLLLESLQ QT EQ G - SYL AL D P GLAQ RL LQSLAEAVEKLEAQ G EP 631
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2421968589 649 P AIIT S TRR R RF LR TV L AAKGISA PVLS FE EI GI D AKPAM VG V V 692
Cdd:COG1298 632 P VLLV S PQL R PY LR RL L ERFLPDL PVLS YN EI PP D VEIES VG T V 675
flhA
PRK06012
flagellar type III secretion system protein FlhA;
1-692
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 841.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 1 MPRVT L LAIFQPTILL A LALM AI IV MMILP V P AWV LD VG L AASF A IAI LI FT V T LFI E RPLDFSAFPT V LL ASLM LRL S L 80
Cdd:PRK06012 8 RLPGN L KLLKWRDLAV A ILVL AI LA MMILP L P PFL LD LL L TFNI A LSV LI LL V A LFI Q RPLDFSAFPT L LL ITTL LRL A L 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 81 NV S ST K LI IGQ GH T GT G AAG D VIE G F AN F IMS G SVLI G L VVF GVIL I V NF I VITKGAGR M AEV G ARF A LDAMPGKQ L AID 160
Cdd:PRK06012 88 NV A ST R LI LLE GH E GT D AAG K VIE A F GH F VVG G NFVV G I VVF IILV I I NF V VITKGAGR I AEV A ARF T LDAMPGKQ M AID 167
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 161 S D M NAG A ID HA EA RA RR ERE Q A E TT F F G SL DGASKFVKGDA V AG L LIT LL N LVM GLIIG TAV HGM PI G R A L ETY AI LT V G 240
Cdd:PRK06012 168 A D L NAG L ID EE EA KK RR KEL Q Q E AD F Y G AM DGASKFVKGDA I AG I LIT VI N IIG GLIIG VVQ HGM SF G E A A ETY TL LT I G 247
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 241 DGLVSQIPA VI IS I A SA I LLS R GGAK G SADMELFR QL GKY P P AL MTVGVLMA L FA LVPG L P F LPF MVG A LV LG GA A QL LR 320
Cdd:PRK06012 248 DGLVSQIPA LL IS T A AG I IVT R VSSD G DVGEQIVG QL FAN P K AL YIAAGVLF L LG LVPG M P H LPF LLL A GL LG FL A YR LR 327
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 321 RADQ K R A RRE A MKMPPP E P A RRK -- S MG D I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P EI R L 397
Cdd:PRK06012 328 KREK K A A ELA A EEAEEE E A A EPE ee S WD D V L P VD PLEL E VGYG L IPLVDENQG G e L LD RI RSI R KKI A QEL G FLV P PV R I 407
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 398 T D DGA LPP GT YRI R I Q GVE QARDR LRP E R V LA LIADNR D LLPA G EDVR EP VY G A PA R W VPA A AQ E E A V L T G S TVV S P TE V 477
Cdd:PRK06012 408 R D NLQ LPP NE YRI K I K GVE VGSGE LRP G R L LA MNPGGV D GELP G IPTK EP AF G L PA V W IDE A LR E Q A Q L L G Y TVV D P ST V 487
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 478 L ATHL L EVIK RNF A R L M G LRALRR LL EET A N lsdptrad ANRRILD EL I P DKVP L DL L LA VL RL LL E ERVSIR N L LL I V E 557
Cdd:PRK06012 488 V ATHL T EVIK NHA A E L L G RQEVQQ LL DRL A K -------- EYPKLVE EL V P KVLS L GT L QK VL QN LL K ERVSIR D L RT I L E 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 558 AI A EVRGLQS - P EAIC EHVRQRLG F Q L V AE Y RR EDG T LP LLQ L A PE W E DTFTTY q LQ TDR G PADV AL P P DKFN RL VANVS 636
Cdd:PRK06012 560 TL A DYAPITK d P DELT EHVRQRLG R Q I V QQ Y KG EDG E LP VIT L D PE L E QLLLQS - LQ GTG G GSYL AL E P GLAE RL LQSLQ 638
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2421968589 637 DKIA R AGES G VF P AIIT S TRR R RF LR TV L AAKGISA PVLS FE EI GIDAKPAM VG V V 692
Cdd:PRK06012 639 EALE R QEMK G EP P VLLV S PAL R PY LR RL L ERFLPQL PVLS YN EI PDNIEIRI VG T V 694
FlhA
TIGR01398
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
12-692
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 759.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 12 PTI LLA LALM AI IVM MILP V PA WV LD VG LA ASF A IAI LI FT VTLFI ER PLDFS A FPT V LL ASLML RLSLNV S ST K LI IGQ 91
Cdd:TIGR01398 2 RDL LLA IGVV AI LAV MILP L PA FL LD IL LA LNI A LSL LI LL VTLFI QK PLDFS S FPT L LL IATLF RLSLNV A ST R LI LTH 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 92 GH T G TG AAG D VIE G F AN F IMS G SVL IGL V VF GVIL IVNFIVITKGA G R M AEV G ARF A LDAMPGKQ L AID S D M NAG A I DHA 171
Cdd:TIGR01398 82 GH E G PN AAG K VIE A F GQ F VVG G NYV IGL I VF IILI IVNFIVITKGA T R I AEV A ARF T LDAMPGKQ M AID A D L NAG L I TEE 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EA RA RRE REQA E TT F F G SL DGASKFVKGDA V AG LL ITL L N LVM GLIIG TAV HGM PIGR A LE TY A ILT V GDGLV S QIPA V I 251
Cdd:TIGR01398 162 EA KK RRE ELEQ E AD F Y G AM DGASKFVKGDA I AG II ITL I N IIG GLIIG VVQ HGM SLSD A AS TY T ILT I GDGLV A QIPA L I 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 IS I A SAILLS R GGAK GS ADMELFR QLG KY P P AL MT V GVLMA L F ALVPGLP FL PF MVG A LV L GGA A - Q L L RR AD Q KRARRE 330
Cdd:TIGR01398 242 IS T A TGLIVT R ASSE GS FGKAIVT QLG AN P R AL LI V AAVLG L L ALVPGLP TF PF LFL A GA L AFL A w Y L R RR SK Q EEEAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 331 AMKMPPP E P A R -- RK S MG DIL DV DD IHV E FAPD L VAMAL D PAT G - L DA RI ANM R NHV A ASF G LIL P E IR LT D DGA LPP GT 407
Cdd:TIGR01398 322 EAAKAQE E A A E ee EE S IN DIL AL DD LEL E LGYG L IPLVD D SQG G d L LD RI RSI R KQL A QEY G FVM P V IR IR D NLR LPP NE 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 408 YRI R I Q GVE Q AR DR LRP ERV LA LIAD N R D LLPA GE DV REP VY G A PA R W VPAAAQ EEA VLT G S TVV S P TE VLATHL L EVIK 487
Cdd:TIGR01398 402 YRI K I K GVE V AR GE LRP GKY LA MNPG N A D GEIP GE ET REP AF G L PA Y W ISEKNK EEA ERL G Y TVV D P AT VLATHL S EVIK 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 488 R N F A R L MGLRALRR LL EETAN lsdptrad ANRRILD ELIPDKVPL DLLLA VL R LLL E ERVSIRNL LL I V E AI A EVRGL - Q 566
Cdd:TIGR01398 482 N N A A E L LTRQEVQN LL DRLKE -------- EYPKLVE ELIPDKVPL GTIQK VL Q LLL R ERVSIRNL PT I L E TL A DYAPI t K 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 567 S P EAIC EHVRQRLG F Q LVAE Y RR EDG T LP LLQ L A P EW E DTFTT y Q L QT D RGPADVA L P P DKFNR LV AN V SDKIARAGES G 646
Cdd:TIGR01398 554 D P DLLV EHVRQRLG R Q ITQQ Y LD EDG V LP VIT L D P DL E AALAE - A L KR D GEGELLD L E P ALLEE LV RA V RKAVEKLANN G 632
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 2421968589 647 VF P AII TS T R R R RFL R TV L AAKGISA PVLS FE EI GIDAKPAM VGVV 692
Cdd:TIGR01398 633 ER P VLL TS P R V R PYV R RI L ERFFPEL PVLS YN EI PDNVRVET VGVV 678
FHIPEP
pfam00771
FHIPEP family;
23-681
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 748.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 23 I IV MMILP V P AWV LD VG LA ASF A IAI LI FT V T L F I E RPLDFS A FPT V LL ASLML RL S LNV S ST K LI IGQ GH T gtg AAG D V 102
Cdd:pfam00771 1 I LA MMILP L P PFL LD LL LA FNI A LSL LI LL V A L Y I K RPLDFS V FPT L LL ITTLF RL A LNV A ST R LI LLH GH E --- AAG K V 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 103 IE G F AN F IMS G SVLI GLVVF GVIL IV N FIVITKGA G R M AEV G ARF A LDAMPGKQ L AID S D M NAG A ID HA EAR A RRE RE Q A 182
Cdd:pfam00771 78 IE A F GQ F VVG G NYVV GLVVF LILV IV Q FIVITKGA E R V AEV A ARF T LDAMPGKQ M AID A D L NAG L ID EE EAR R RRE EL Q R 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 183 E TT F F G SL DGASKFVKGDA V AG LL ITL L N LVM GLIIG TAV HGM PI G R A LE TY AI LT V GDGLVSQIPA VI IS I A SA I LLS R 262
Cdd:pfam00771 158 E AD F Y G AM DGASKFVKGDA I AG II ITL I N IIG GLIIG VLQ HGM SF G E A AQ TY TL LT I GDGLVSQIPA LL IS T A AG I IVT R 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 263 GGAK G SADM E LFR QL GKY P P AL MTVGVLMA L FA L V PGLP F LPF MVG A LV LG GA A QL LRR ADQ K R A RR EA MKMPPPEP A rr 342
Cdd:pfam00771 238 VASE G NLGE E IVG QL FAN P K AL YIAAGVLL L LG L I PGLP T LPF LLL A AL LG FL A YR LRR RKK K A A AE EA EAEEAAAA A -- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 343 ksmgd I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P E IR LT D DGA L P P GT YRI R I Q GVE Q AR DR 421
Cdd:pfam00771 316 ----- V L P VD PLEL E LGYG L IPLVDESQG G d L LD RI KGI R RQL A LEL G FVV P P IR IR D NLQ L K P NE YRI K I K GVE V AR GE 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 422 L R P ERV LA LIADNRDLLPA G EDVR EP VY G A PA R W VPAAAQ EEA V L T G S TVV S P TE V L ATHL L EVIKR NF A R L M G LRALRR 501
Cdd:pfam00771 391 L L P DHL LA MNPGGVLGEIP G IPTK EP AF G L PA V W IDEEQR EEA E L A G Y TVV D P PT V I ATHL T EVIKR HA A E L L G RQEVQA 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 502 LL EETAN lsdptrad ANRRILD EL I P DKVP L DLLLA VL RL LL E ERVSIR N L LL I V E AI A EV - RGLQS P EAIC E H VRQ R LG 580
Cdd:pfam00771 471 LL DNLKK -------- EYPKLVE EL V P KLLS L GEIQK VL QN LL R ERVSIR D L RT I L E TL A DY a PKTKD P DLLT E Y VRQ A LG 542
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 581 F Q LVAE Y RR EDGTLP LLQ L A PE W E DTFTTYQL Q TDRGPADV AL P PD KFN RL VANV S DKIARAGES G VF P AII TS TRR RR F 660
Cdd:pfam00771 543 R Q ICQQ Y AG EDGTLP VIT L D PE L E QLLRESLQ Q SEGQGSYL AL D PD LAQ RL LEAL S EAVEKLEQQ G EP P VLL TS PDI RR Y 622
650 660
....*....|....*....|.
gi 2421968589 661 LR TV L AAKGISA PVLS FE EI G 681
Cdd:pfam00771 623 LR RL L ERFLPDL PVLS YN EI P 643
Name
Accession
Description
Interval
E-value
FlhA
COG1298
Flagellar biosynthesis protein FlhA [Cell motility];
14-692
0e+00
Flagellar biosynthesis protein FlhA [Cell motility];
Pssm-ID: 440909 [Multi-domain]
Cd Length: 676
Bit Score: 843.17
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 ILLA L ALM AI IV MMILP V P AWV LD VG LA ASF A IAI LI FT V T L F I E RPLDFS A FPT V LL ASLML RLSLNV S ST K LI IGQ GH 93
Cdd:COG1298 1 LAVP L GVI AI LA MMILP L P PFL LD LL LA FNI A LSL LI LL V A L Y I K RPLDFS V FPT L LL ITTLF RLSLNV A ST R LI LLE GH 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 T GT G AAG D VIE G F AN F IMS G SVLI GLVVF GVIL I V NF I VITKGAGR M AEV G ARF A LDAMPGKQ L AID S D M NAG A ID HA EA 173
Cdd:COG1298 81 E GT D AAG K VIE A F GE F VVG G NYVV GLVVF LILV I I NF V VITKGAGR I AEV A ARF T LDAMPGKQ M AID A D L NAG L ID EE EA 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 R A RRE RE Q A E TT F F G SL DGASKFV K GDA V AG L LITL L N LVM GLIIG TAV HGM PI G R A LE TY AI LT V GDGLVSQIPA VI IS 253
Cdd:COG1298 161 R R RRE EI Q R E AD F Y G AM DGASKFV R GDA I AG I LITL I N IIG GLIIG VLQ HGM SF G E A AQ TY TL LT I GDGLVSQIPA LL IS 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I A SA I LLS R G G AK G SADME L FR QL GKY P P AL MTVGVLMA L FA L V PG L P F LPF MVG A LV LGG A A QL L RRADQKRARR EA MK 333
Cdd:COG1298 241 T A AG I IVT R A G SE G DLGEQ L SG QL FAN P K AL YIAAGVLG L LG L I PG M P H LPF LLL A AL LGG L A YR L KKRQKEEEAE EA AA 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 334 MPPP E P A --- RRK S MG D I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P EI R LT D DGA L P P GT YR 409
Cdd:COG1298 321 AAEA E A A aep AEE S VD D L L P VD PLEL E LGYG L IPLVDESQG G d L LD RI KGI R RQL A QEL G FVV P PV R IR D NLQ L K P NE YR 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 I R I Q GVE Q AR DR LRP E R V LA LIADNRDLLPA G EDVR EP VY G A PA R W VPAAAQ EEA V L T G S TVV S P TE V L ATHL L EVIKR N 489
Cdd:COG1298 401 I K I K GVE V AR GE LRP D R L LA INPGGVTGELP G IPTK EP AF G L PA V W IDPEQR EEA E L L G Y TVV D P ST V I ATHL S EVIKR H 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 F A R L M G LRALRR LL EET anlsdptr ADANRRILD EL I P DKVP L DL L LA VL RL LL E ERVSIR N L LL I V E AI A EVRGL - QS P 568
Cdd:COG1298 481 A A E L L G RQEVQQ LL DRL -------- KKEYPKLVE EL V P KLLS L GE L QK VL QN LL R ERVSIR D L RT I L E TL A DYAPR t KD P 552
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 EAIC EHVRQ R LG F Q L V AE Y RRE DG T LP LLQ L A PE W E DTFTTYQL QT DR G p ADV AL P P DKFN RL VANVSDKIARAGES G VF 648
Cdd:COG1298 553 DLLT EHVRQ A LG R Q I V QQ Y AGP DG E LP VIT L D PE L E QLLLESLQ QT EQ G - SYL AL D P GLAQ RL LQSLAEAVEKLEAQ G EP 631
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 2421968589 649 P AIIT S TRR R RF LR TV L AAKGISA PVLS FE EI GI D AKPAM VG V V 692
Cdd:COG1298 632 P VLLV S PQL R PY LR RL L ERFLPDL PVLS YN EI PP D VEIES VG T V 675
flhA
PRK06012
flagellar type III secretion system protein FlhA;
1-692
0e+00
flagellar type III secretion system protein FlhA;
Pssm-ID: 235672 [Multi-domain]
Cd Length: 697
Bit Score: 841.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 1 MPRVT L LAIFQPTILL A LALM AI IV MMILP V P AWV LD VG L AASF A IAI LI FT V T LFI E RPLDFSAFPT V LL ASLM LRL S L 80
Cdd:PRK06012 8 RLPGN L KLLKWRDLAV A ILVL AI LA MMILP L P PFL LD LL L TFNI A LSV LI LL V A LFI Q RPLDFSAFPT L LL ITTL LRL A L 87
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 81 NV S ST K LI IGQ GH T GT G AAG D VIE G F AN F IMS G SVLI G L VVF GVIL I V NF I VITKGAGR M AEV G ARF A LDAMPGKQ L AID 160
Cdd:PRK06012 88 NV A ST R LI LLE GH E GT D AAG K VIE A F GH F VVG G NFVV G I VVF IILV I I NF V VITKGAGR I AEV A ARF T LDAMPGKQ M AID 167
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 161 S D M NAG A ID HA EA RA RR ERE Q A E TT F F G SL DGASKFVKGDA V AG L LIT LL N LVM GLIIG TAV HGM PI G R A L ETY AI LT V G 240
Cdd:PRK06012 168 A D L NAG L ID EE EA KK RR KEL Q Q E AD F Y G AM DGASKFVKGDA I AG I LIT VI N IIG GLIIG VVQ HGM SF G E A A ETY TL LT I G 247
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 241 DGLVSQIPA VI IS I A SA I LLS R GGAK G SADMELFR QL GKY P P AL MTVGVLMA L FA LVPG L P F LPF MVG A LV LG GA A QL LR 320
Cdd:PRK06012 248 DGLVSQIPA LL IS T A AG I IVT R VSSD G DVGEQIVG QL FAN P K AL YIAAGVLF L LG LVPG M P H LPF LLL A GL LG FL A YR LR 327
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 321 RADQ K R A RRE A MKMPPP E P A RRK -- S MG D I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P EI R L 397
Cdd:PRK06012 328 KREK K A A ELA A EEAEEE E A A EPE ee S WD D V L P VD PLEL E VGYG L IPLVDENQG G e L LD RI RSI R KKI A QEL G FLV P PV R I 407
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 398 T D DGA LPP GT YRI R I Q GVE QARDR LRP E R V LA LIADNR D LLPA G EDVR EP VY G A PA R W VPA A AQ E E A V L T G S TVV S P TE V 477
Cdd:PRK06012 408 R D NLQ LPP NE YRI K I K GVE VGSGE LRP G R L LA MNPGGV D GELP G IPTK EP AF G L PA V W IDE A LR E Q A Q L L G Y TVV D P ST V 487
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 478 L ATHL L EVIK RNF A R L M G LRALRR LL EET A N lsdptrad ANRRILD EL I P DKVP L DL L LA VL RL LL E ERVSIR N L LL I V E 557
Cdd:PRK06012 488 V ATHL T EVIK NHA A E L L G RQEVQQ LL DRL A K -------- EYPKLVE EL V P KVLS L GT L QK VL QN LL K ERVSIR D L RT I L E 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 558 AI A EVRGLQS - P EAIC EHVRQRLG F Q L V AE Y RR EDG T LP LLQ L A PE W E DTFTTY q LQ TDR G PADV AL P P DKFN RL VANVS 636
Cdd:PRK06012 560 TL A DYAPITK d P DELT EHVRQRLG R Q I V QQ Y KG EDG E LP VIT L D PE L E QLLLQS - LQ GTG G GSYL AL E P GLAE RL LQSLQ 638
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 2421968589 637 DKIA R AGES G VF P AIIT S TRR R RF LR TV L AAKGISA PVLS FE EI GIDAKPAM VG V V 692
Cdd:PRK06012 639 EALE R QEMK G EP P VLLV S PAL R PY LR RL L ERFLPQL PVLS YN EI PDNIEIRI VG T V 694
FlhA
TIGR01398
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, ...
12-692
0e+00
flagellar biosynthesis protein FlhA; This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273599 [Multi-domain]
Cd Length: 678
Bit Score: 759.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 12 PTI LLA LALM AI IVM MILP V PA WV LD VG LA ASF A IAI LI FT VTLFI ER PLDFS A FPT V LL ASLML RLSLNV S ST K LI IGQ 91
Cdd:TIGR01398 2 RDL LLA IGVV AI LAV MILP L PA FL LD IL LA LNI A LSL LI LL VTLFI QK PLDFS S FPT L LL IATLF RLSLNV A ST R LI LTH 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 92 GH T G TG AAG D VIE G F AN F IMS G SVL IGL V VF GVIL IVNFIVITKGA G R M AEV G ARF A LDAMPGKQ L AID S D M NAG A I DHA 171
Cdd:TIGR01398 82 GH E G PN AAG K VIE A F GQ F VVG G NYV IGL I VF IILI IVNFIVITKGA T R I AEV A ARF T LDAMPGKQ M AID A D L NAG L I TEE 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EA RA RRE REQA E TT F F G SL DGASKFVKGDA V AG LL ITL L N LVM GLIIG TAV HGM PIGR A LE TY A ILT V GDGLV S QIPA V I 251
Cdd:TIGR01398 162 EA KK RRE ELEQ E AD F Y G AM DGASKFVKGDA I AG II ITL I N IIG GLIIG VVQ HGM SLSD A AS TY T ILT I GDGLV A QIPA L I 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 IS I A SAILLS R GGAK GS ADMELFR QLG KY P P AL MT V GVLMA L F ALVPGLP FL PF MVG A LV L GGA A - Q L L RR AD Q KRARRE 330
Cdd:TIGR01398 242 IS T A TGLIVT R ASSE GS FGKAIVT QLG AN P R AL LI V AAVLG L L ALVPGLP TF PF LFL A GA L AFL A w Y L R RR SK Q EEEAAA 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 331 AMKMPPP E P A R -- RK S MG DIL DV DD IHV E FAPD L VAMAL D PAT G - L DA RI ANM R NHV A ASF G LIL P E IR LT D DGA LPP GT 407
Cdd:TIGR01398 322 EAAKAQE E A A E ee EE S IN DIL AL DD LEL E LGYG L IPLVD D SQG G d L LD RI RSI R KQL A QEY G FVM P V IR IR D NLR LPP NE 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 408 YRI R I Q GVE Q AR DR LRP ERV LA LIAD N R D LLPA GE DV REP VY G A PA R W VPAAAQ EEA VLT G S TVV S P TE VLATHL L EVIK 487
Cdd:TIGR01398 402 YRI K I K GVE V AR GE LRP GKY LA MNPG N A D GEIP GE ET REP AF G L PA Y W ISEKNK EEA ERL G Y TVV D P AT VLATHL S EVIK 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 488 R N F A R L MGLRALRR LL EETAN lsdptrad ANRRILD ELIPDKVPL DLLLA VL R LLL E ERVSIRNL LL I V E AI A EVRGL - Q 566
Cdd:TIGR01398 482 N N A A E L LTRQEVQN LL DRLKE -------- EYPKLVE ELIPDKVPL GTIQK VL Q LLL R ERVSIRNL PT I L E TL A DYAPI t K 553
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 567 S P EAIC EHVRQRLG F Q LVAE Y RR EDG T LP LLQ L A P EW E DTFTT y Q L QT D RGPADVA L P P DKFNR LV AN V SDKIARAGES G 646
Cdd:TIGR01398 554 D P DLLV EHVRQRLG R Q ITQQ Y LD EDG V LP VIT L D P DL E AALAE - A L KR D GEGELLD L E P ALLEE LV RA V RKAVEKLANN G 632
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 2421968589 647 VF P AII TS T R R R RFL R TV L AAKGISA PVLS FE EI GIDAKPAM VGVV 692
Cdd:TIGR01398 633 ER P VLL TS P R V R PYV R RI L ERFFPEL PVLS YN EI PDNVRVET VGVV 678
FHIPEP
pfam00771
FHIPEP family;
23-681
0e+00
FHIPEP family;
Pssm-ID: 459933
Cd Length: 645
Bit Score: 748.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 23 I IV MMILP V P AWV LD VG LA ASF A IAI LI FT V T L F I E RPLDFS A FPT V LL ASLML RL S LNV S ST K LI IGQ GH T gtg AAG D V 102
Cdd:pfam00771 1 I LA MMILP L P PFL LD LL LA FNI A LSL LI LL V A L Y I K RPLDFS V FPT L LL ITTLF RL A LNV A ST R LI LLH GH E --- AAG K V 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 103 IE G F AN F IMS G SVLI GLVVF GVIL IV N FIVITKGA G R M AEV G ARF A LDAMPGKQ L AID S D M NAG A ID HA EAR A RRE RE Q A 182
Cdd:pfam00771 78 IE A F GQ F VVG G NYVV GLVVF LILV IV Q FIVITKGA E R V AEV A ARF T LDAMPGKQ M AID A D L NAG L ID EE EAR R RRE EL Q R 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 183 E TT F F G SL DGASKFVKGDA V AG LL ITL L N LVM GLIIG TAV HGM PI G R A LE TY AI LT V GDGLVSQIPA VI IS I A SA I LLS R 262
Cdd:pfam00771 158 E AD F Y G AM DGASKFVKGDA I AG II ITL I N IIG GLIIG VLQ HGM SF G E A AQ TY TL LT I GDGLVSQIPA LL IS T A AG I IVT R 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 263 GGAK G SADM E LFR QL GKY P P AL MTVGVLMA L FA L V PGLP F LPF MVG A LV LG GA A QL LRR ADQ K R A RR EA MKMPPPEP A rr 342
Cdd:pfam00771 238 VASE G NLGE E IVG QL FAN P K AL YIAAGVLL L LG L I PGLP T LPF LLL A AL LG FL A YR LRR RKK K A A AE EA EAEEAAAA A -- 315
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 343 ksmgd I L D VD DIHV E FAPD L VAMALDPAT G - L DA RI ANM R NHV A ASF G LIL P E IR LT D DGA L P P GT YRI R I Q GVE Q AR DR 421
Cdd:pfam00771 316 ----- V L P VD PLEL E LGYG L IPLVDESQG G d L LD RI KGI R RQL A LEL G FVV P P IR IR D NLQ L K P NE YRI K I K GVE V AR GE 390
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 422 L R P ERV LA LIADNRDLLPA G EDVR EP VY G A PA R W VPAAAQ EEA V L T G S TVV S P TE V L ATHL L EVIKR NF A R L M G LRALRR 501
Cdd:pfam00771 391 L L P DHL LA MNPGGVLGEIP G IPTK EP AF G L PA V W IDEEQR EEA E L A G Y TVV D P PT V I ATHL T EVIKR HA A E L L G RQEVQA 470
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 502 LL EETAN lsdptrad ANRRILD EL I P DKVP L DLLLA VL RL LL E ERVSIR N L LL I V E AI A EV - RGLQS P EAIC E H VRQ R LG 580
Cdd:pfam00771 471 LL DNLKK -------- EYPKLVE EL V P KLLS L GEIQK VL QN LL R ERVSIR D L RT I L E TL A DY a PKTKD P DLLT E Y VRQ A LG 542
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 581 F Q LVAE Y RR EDGTLP LLQ L A PE W E DTFTTYQL Q TDRGPADV AL P PD KFN RL VANV S DKIARAGES G VF P AII TS TRR RR F 660
Cdd:pfam00771 543 R Q ICQQ Y AG EDGTLP VIT L D PE L E QLLRESLQ Q SEGQGSYL AL D PD LAQ RL LEAL S EAVEKLEQQ G EP P VLL TS PDI RR Y 622
650 660
....*....|....*....|.
gi 2421968589 661 LR TV L AAKGISA PVLS FE EI G 681
Cdd:pfam00771 623 LR RL L ERFLPDL PVLS YN EI P 643
flhA
PRK12792
flagellar biosynthesis protein FlhA; Reviewed
14-680
2.81e-176
flagellar biosynthesis protein FlhA; Reviewed
Pssm-ID: 237205
Cd Length: 694
Bit Score: 519.29
E-value: 2.81e-176
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 ILL A LALM AI IVMMI LPVPA WVL D V GLA A S F A IAI LI FT V T L F I E RPL D FSAFPTVLL ASLM LRL S LN VSS T K LI IGQ G H 93
Cdd:PRK12792 18 FGF A VGIV AI LAVLF LPVPA VLI D I GLA F S I A LSV LI LM V A L W I Q RPL E FSAFPTVLL IATL LRL A LN IAT T R LI LSN G Q 97
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 T G TG AAG D VI E GF AN F I MSG SVL IGLVVF GVILI VNF I VITKGA G R M AEVGARF A LDA M PGKQ L AID S D MN AG A ID HA EA 173
Cdd:PRK12792 98 E G VD AAG H VI A GF SQ F V MSG DFV IGLVVF AILIT VNF L VITKGA T R I AEVGARF T LDA I PGKQ M AID A D LS AG L ID DK EA 177
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RA RR EREQA E TT FFGS L DGASKFV K GDA V A G L L I TLL N LVM G L IIG TAV HGMP I G R A LETYAI L T VGDGLVSQIPA V I I S 253
Cdd:PRK12792 178 QR RR RELEE E SA FFGS M DGASKFV R GDA I A S L I I IAV N IFG G I IIG VTR HGMP L G Q A ADVFTK L S VGDGLVSQIPA L I V S 257
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I A SAI L L S R GG AK GSA DMELFR QLG K YP P AL MTVGV LM ALF A L VPGLPFLPF MVGAL V LGGA A QLL -- RRA DQKR A R -- R 329
Cdd:PRK12792 258 L A AGL L V S K GG TR GSA EQAVLG QLG A YP R AL SVAAL LM FVL A I VPGLPFLPF ALLGG V MAFV A YTI pr RRA ARAA A E aa K 337
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 330 EAMKMPPPEPARRK S MGDI L DVDD I HVEFAPD L V A MALDPATG L DA R I A N MR NHV A ASF G LIL PEI R LTD DGA LPP G TY R 409
Cdd:PRK12792 338 VKREEESAQAEAKD S VKEQ L RTAE I ELCLGKQ L A A QLQGAHAE L AH R V A K MR RKF A KQY G FVV PEI K LTD SLS LPP K TY Q 417
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 410 I R I Q G VEQ A RDR LRP ERV L ALIA D NRDLLPA GE D VREP VY G AP A R WVP A A AQE E AVLT G STV V SPTE VL A THL L EVI KR N 489
Cdd:PRK12792 418 I K I H G TVV A TQE LRP GEL L VVVG D GPRPDVP GE E VREP AF G MK A L WVP D A FAN E VRRD G FEP V DNAS VL L THL S EVI RN N 497
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 490 FAR L MGLRAL R R LL E etanlsdpt R A D AN - R R IL D ELI P DKVPLDL L L AVL R LLL E ERVSIRNL L LI V EA I AE VRGL - QS 567
Cdd:PRK12792 498 LPQ L LSYKDM R A LL D --------- R L D PE y K R LI D DIC P SQISYSG L Q AVL K LLL A ERVSIRNL H LI L EA V AE IAPH a RR 568
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 568 P E A I C EHVR Q R LGF Q LVAEY r RED G T L PL L Q L APE W EDT F tt Y Q LQTDRGPAD V A --- LP P DKFNRLVANV S DK I ARAGE 644
Cdd:PRK12792 569 A E Q I A EHVR M R IAQ Q ICGDL - SDN G V L KV L R L GNR W DLA F -- H Q SLKRDAKGE V V efd ID P RLVEQFGTEA S EA I RERMD 645
650 660 670
....*....|....*....|....*....|....*.
gi 2421968589 645 S G VFPAII T STRR R RFL R TVLAAKGISA PVLS FE EI 680
Cdd:PRK12792 646 Q G HQFVLV T APEA R PYV R MIIERLFPTL PVLS HL EI 681
EscV
COG4789
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and ...
14-681
1.77e-164
Type III secretory pathway, component EscV [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443818 [Multi-domain]
Cd Length: 688
Bit Score: 488.92
E-value: 1.77e-164
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 IL LA LA L M AII V MMILP V P AWVL D VGL A ASFA I AI L IFT V TLF I ER PL D FS A FP T VLL ASLML RL S L NV S S T K LI IG Q GH 93
Cdd:COG4789 11 LV LA AL L V AII F MMILP L P TYLV D ILI A LNIT I SV L LLM V AMY I PS PL A FS T FP S VLL ITTLF RL A L SI S T T R LI LL Q AD 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 tgtga AG DV IE G F A NF IMS G SVLI GLV V F GV I LI V N FIVITKG AG R M AEV G ARF A LDAMPGKQ LA ID S D MN AG A ID HA EA 173
Cdd:COG4789 91 ----- AG HI IE T F G NF VVG G NLVV GLV I F LI I TV V Q FIVITKG SE R V AEV A ARF S LDAMPGKQ MS ID A D LR AG V ID AD EA 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 R A RR EREQA E TTFF G SL DGA S KFVKGDA V AG LL I T L L N LVM G LI IG TAV HGM PIGR AL E TY A ILT V GDGLV S QIPA VI IS 253
Cdd:COG4789 166 R R RR ALLEK E SQLY G AM DGA M KFVKGDA I AG II I I L V N IIG G IA IG VLQ HGM SASE AL H TY S ILT I GDGLV A QIPA LL IS 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I ASA I LLS R GGAKGSADM -- E LFR QL GKY P P AL MTVG VL MA LFAL V PG L P F L P F MVG A LV LGG AAQL L R R ADQKR A RREA 331
Cdd:COG4789 246 I TAG I IVT R VSGDEDSNL gr E IVS QL LAQ P K AL LIAA VL LL LFAL I PG F P T L V F LLL A AL LGG LGFK L L R RKRRA A AAAE 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 332 MKMP P PEP A R -- RK S MGDIL D V DD IH ------ VEFA P D L v A M AL DPAT g L DAR I ANM RN HVAASF G LI LP E I RLTDDGA L 403
Cdd:COG4789 326 SEPL P ALQ A A ga KG S EAGLI D G DD FP ptvpli LRLS P S L - A P AL EAEA - L NQE I RRL RN RLFEDL G VP LP G I HIRFNPG L 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 404 P PGT Y R I RIQG V EQ AR DR L R P ERV L ALIADN -- RD L LPAG E DVRE P VYGA P AR WVPA AAQ E EAVLT G ST V VSPTE VLA T H 481
Cdd:COG4789 404 P DDE Y S I LLNE V PV AR GT L P P GHL L VRDDVD el EA L GIPA E EGEL P LGEG P SL WVPA EHA E LLEKA G IK V RDAED VLA L H 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 482 L LE V IK R NF A RLM G LRAL R R LL E ----------- E TANLSDPT R - A DANR R IL delipdkvpldlllavlrlll EE RV SI 549
Cdd:COG4789 484 L SL V LR R HA A EFI G IQET R Y LL D qmekkypelvk E VQRVLPLQ R i A EVLQ R LV --------------------- EE GI SI 542
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 550 RNL L LI V EA IA E VRGLQS - PEAIC E H VR QR L GFQLVAE Y RRED GTLP L L Q L A PE W E DTFTTYQL QT DR G PA d V AL P P DKF 628
Cdd:COG4789 543 RNL R LI L EA LI E WGPKEK d VVMLT E Y VR IA L KRYICHR Y SGGQ GTLP A L L L D PE I E EMIRGAIR QT SA G SF - L AL D P EQS 621
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 2421968589 629 NRLVANVSDKIARAGES G VF P AII TS TRR RRF L R TVLAAKGISA PVLS FE E IG 681
Cdd:COG4789 622 QAILEQLRQALGPLPPG G QD P VLL TS MDI RRF V R KLIEREFPDL PVLS YQ E LT 674
hrcV
TIGR01399
type III secretion protein, HrcV family; Members of this family are closely homologous to the ...
12-692
2.17e-139
type III secretion protein, HrcV family; Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 273600 [Multi-domain]
Cd Length: 677
Bit Score: 424.07
E-value: 2.17e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 12 PTIL LAL A L M AII V MMILP V P AWVL D VGL A ASFA I AI L IFTVTLF I E RPL DF S A FP T VLL ASLML RL S L NV S S T K LI IGQ 91
Cdd:TIGR01399 3 SDLV LAL L L L AII S MMILP L P TLLV D ILI A INIT I SV L LLMIAIY I P RPL AL S T FP S VLL ITTLF RL A L SI S T T R LI LLH 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 92 GH tgtga AG DV IE G F AN F IMS G SVLI GLV V F GV I L IV N FIVITKG AG R M AEV G ARF A LDAMPGKQ LA ID S D MN AG A ID HA 171
Cdd:TIGR01399 83 AD ----- AG NI IE A F GQ F VVG G NLAV GLV I F LI I T IV Q FIVITKG SE R V AEV S ARF S LDAMPGKQ MS ID A D LR AG V ID AD 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 172 EAR A RR EREQA E TTFF G SL DGA S KFVKGDA V AG LL I T L L N LVM G LI IG TAV HGM PIGR AL ET Y AI LT V GDGLVSQIPA VI 251
Cdd:TIGR01399 158 EAR R RR STLEK E SQLY G AM DGA M KFVKGDA I AG II I V L I N IIG G IS IG VTQ HGM SASE AL HL Y TV LT I GDGLVSQIPA LL 237
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 252 IS IASA I LLS R GGAKGSADM -- E LFR QL GKY P P AL MTVG VL MAL FAL V PG L P F L P F MVG A LV L GG A AQ LL R R ADQK RA RR 329
Cdd:TIGR01399 238 IS VTAG I IVT R VPGEAERNL gr E IGH QL TSQ P R AL LLAA VL LLG FAL I PG F P L L V F ALL A VL L AA A GY LL S R RKRS RA KA 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 330 EAMKMPPPEPARRKSMGD I LDV D D ------ IHVEFA PDL VAM A LDPA tg LD AR I AN MR NHVAASF G LI LP E I RLTDDGA L 403
Cdd:TIGR01399 318 NKAQASGAVASAPGAAAP I KNL D P faeacp LILRLS PDL QSS A DKDT -- LD QE I ER MR WALFEDL G IP LP G I IIRVGDS L 395
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 404 P PGTY RI RIQG V EQA RD RLR P ervlaliad NRDL L PA G E D VR E p V Y G A PA R ------------ WV PAAAQ E EAVLT G STV 471
Cdd:TIGR01399 396 P DNEF RI LLYE V PVL RD TIP P --------- GHVA L ND G V D NI E - V A G I PA I sgkrwpgesqrv WV TEEGA E KLQGA G LGY 465
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 472 V S PTE V LATH L LEVIK RN FARLM G LRAL R R LL E ----------- E TANLSDPT R - A DANR R IL delipdkvpldlllavl 539
Cdd:TIGR01399 466 F S DSQ V ITHR L KATLL RN AQEFI G IQET R Y LL D qmereypelvk E VQRVLPLQ R i A EVLQ R LV ----------------- 528
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 540 rlll E E R VSIRNL L LI V E AIA E v RGLQSPEAI -- C E H VR QR L GFQLVAE Y RREDGT L PLLQLA PE W E DTFTTYQL QT DR G 617
Cdd:TIGR01399 529 ---- S E Q VSIRNL R LI L E TLI E - WAQREKDVV ml T E Y VR IA L KRYICHR Y ANGGRQ L SAVLID PE I E ELIRGAIR QT ST G 603
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2421968589 618 PA d V AL P PD KFNR L VANVSDKIARAGESGVF P AII TS TRR RR FL R TVLAAKGISA PVLS FE E I G IDAKPAMV G VV 692
Cdd:TIGR01399 604 TY - L AL D PD DSEQ L LDQIRQAVGDLPRAPSQ P VLL TS MDI RR YV R KMIESEFPDL PVLS YQ E L G EEIEVQVL G RI 677
PRK12720
PRK12720
EscV/YscV/HrcV family type III secretion system export apparatus protein;
14-692
9.85e-119
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 183699 [Multi-domain]
Cd Length: 675
Bit Score: 370.20
E-value: 9.85e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 14 I L LA LA L MAIIV MMILP V P A W VL D VGL A ASFAIAILIFTVTLFIER PL D FS A FP TV LL ASLML RL S L NV S STK L IIG Q g H 93
Cdd:PRK12720 17 I V LA VM L LVAVF MMILP L P T W MV D ILI A INLMFSVILLMIAIYLRD PL E FS V FP SL LL ITTLY RL A L TI S TSR L VLL Q - H 95
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 T gtga AG DVIEG F AN F IMS G SVLI GL V VF GV I L IV N FIVITKG AG R M AEV G ARF A LD A MPGKQ LA ID S DM N AG A ID HA EA 173
Cdd:PRK12720 96 D ---- AG EIVDA F GK F VVG G NLAV GL I VF TI I T IV Q FIVITKG SE R V AEV S ARF S LD G MPGKQ MS ID G DM R AG V ID AD EA 171
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 R AR R ERE Q A E TTFF G SL DGA S KFVKGDA V AG LLIT L L N LVM G L IIG TAV H G M PIGR A LE TYA I L TV GDGL VS QIP AVI IS 253
Cdd:PRK12720 172 R RL R QHV Q K E SRLL G AM DGA M KFVKGDA I AG IIVI L V N IIG G I IIG VMQ H D M SASE A VN TYA V L SI GDGL CG QIP SLL IS 251
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I ASA I LLS R -- G GAKGSADM EL FR Q L G KY P P AL MTVG V LMA LFAL V PG L PF LP F MVG A LVLGGA A Q LLRR adq K RARRE A 331
Cdd:PRK12720 252 I TAG I IVT R vp G EKRQNLAN EL SS Q I G RQ P Q AL WLAA V VLM LFAL I PG F PF IT F AFL A ALVAAP A I LLRR --- K KSVVS A 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 332 MKMPPPEPARRKSMGDIL - DVDDIHVEF AP D L vamald PATG L DAR I ANM R NHVAASF G LI LPE IRLTD D GA L PPG T YRI 410
Cdd:PRK12720 329 NGVEAGGSEEGPEGDSMV p GACPLMLRL AP T L ------ HSAD L IRD I DAL R WFLFEDL G VP LPE VNIEV D PE L TEK T LTV 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 411 RI ------ QGVEQARDR L RPERVL A LIADNRDL LP A G edvrepvy GAPAR W VPAAAQ E E A VLT G ST V VSPTEVLATH L LE 484
Cdd:PRK12720 403 LL yqepvl SLSLPPQAL L LLIGPD A SLVGDSQT LP N G -------- MGQIC W LTKDQA E Q A QGF G LD V FAGSQRISAL L KC 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 485 V IK R NFARLM G LRAL R R L L eetanlsdptra DA NRRILD EL IPD --- KV P LDLLLAV L RL L LE ERVSIR N L LL I VEAIA E 561
Cdd:PRK12720 475 V LL R YMGEFI G VQET R Y L M ------------ DA MEKRYG EL VKE lqr QL P VGKIAEI L QR L VS ERVSIR D L RT I FGTLV E 542
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 562 - VRGLQSPEAIC E H VR QR L GFQLVAEYRR E DGT LP L L QLAPEW E DTFTTYQL QT DR G p ADV AL PPDKFNRLVANVSDKIA 640
Cdd:PRK12720 543 w APREKDVVMLT E Y VR IA L RRHILRRFNH E GKW LP V L RIGEGI E NLIRESIR QT SA G - TYS AL SSRHSTQILQLIEQALK 621
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 2421968589 641 RAGES gvfp AII TS TRR RRFLR TVLAAKGISA PVLS FE E I G ID A KPAM VG VV 692
Cdd:PRK12720 622 QSQKL ---- VLV TS VDV RRFLR KIIERTLFDL PVLS WQ E L G DE A EIKV VG SI 669
PRK15337
PRK15337
EscV/YscV/HrcV family type III secretion system export apparatus protein;
15-680
5.64e-95
EscV/YscV/HrcV family type III secretion system export apparatus protein;
Pssm-ID: 237946 [Multi-domain]
Cd Length: 686
Bit Score: 308.46
E-value: 5.64e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 15 L LA L A LM A - II V M M I L P V P AWVL D VGLAASFAI AIL I F TVTLF I E R P L D FS A FP TV LL ASLML RL S L NV S STK LI IGQGH 93
Cdd:PRK15337 15 L II L V LM V m II A M L I I P L P TYLV D FLIGLNIVL AIL V F MGSFY I D R I L S FS T FP SI LL ITTLF RL A L SI S TSR LI LLDAD 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 94 tgtga AG DV I EG F AN F IMSG S VLI G L V V F GVILI V N FIVITKG AG R M AEV G ARF A LD A MPGKQ LA ID S D MN AG A ID HAEA 173
Cdd:PRK15337 95 ----- AG EI I TT F GQ F VIGD S LVV G F V I F SIVTV V Q FIVITKG SE R V AEV A ARF S LD G MPGKQ MS ID A D LK AG I ID ADGV 169
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 174 RA RR EREQA E TTFF GS L DGA S KF V KGDA V AG LL I TLL NL VM G LII G TAV HGM PIGR AL E TY A ILT V GDGLV S QIPA VI IS 253
Cdd:PRK15337 170 KE RR SVLER E SQLY GS F DGA M KF I KGDA I AG II I IFV NL IG G ISV G MTQ HGM DLSS AL S TY T ILT I GDGLV A QIPA LL IS 249
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 254 I ASAILLS R - G G AKGSADMELFR QL GKY P PA L MTVGV L MALFA L V PG L P FLP F MVG A L VLG GA aq LLRRADQ K RARRE A M 332
Cdd:PRK15337 250 I SAGFIVT R v N G DSDNLGRNIMS QL LSN P FV L VVTAI L ALSIG L L PG F P LPV F LLL A V VLG VL -- FYFKKFR K KKKSA A E 327
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 333 KMPPPEP A RR ------- K S M G D I L D V D DIHV E FA P DLVAM ------ A L DPA t G L DA R I anm R NHVAASF G LI LP E I R L TD 399
Cdd:PRK15337 328 PDTSGGE A PL didekag S S L G L I G D L D KVIP E TV P LILLV pearrp D L EKE - N L AE R L --- R SQFFIDY G VR LP D I L L RY 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 400 DGA L PPGTYRIR I QGVEQ A RDRLRPERVLALI a DNRD L LPA G EDVREPV - Y G APAR WVP AAAQ E EAVLT G STVV S PTEV L 478
Cdd:PRK15337 404 SEG L DDNSIVVL I NEIRA A QFTIYFDLHRVVN - YSDE L VSL G INPTIID s G G EQYY WVP HEDT E KLAKL G YVLR S AIDE L 482
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 479 ATH L LEVIKR N FARLM G LRALRR LL EETAN ----- L SDPT R ADANR RI LDE L ipdkvpldlllavl RL LL E ER V SIRN LL 553
Cdd:PRK15337 483 YHC L SVLLLH N INEFF G IQETKH LL DQLEK kypdl L KEVY R HATVQ RI SEV L -------------- QR LL S ER I SIRN MK 548
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 554 LI V EA I A E - VRGLQSPEAIC EHVR QR L GFQLVAEYRR e D G T L PLLQ L AP E W ED TFTTYQL QT DR G p ADVA L P P DKFNR L V 632
Cdd:PRK15337 549 LI M EA L A L w APREKDVIMLV EHVR GA L ARYICHKFAA - G G E L RAVV L SA E V ED AIRKGIR QT SG G - TFLN L D P AESEN L M 626
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 2421968589 633 ANVSDKIARA G ESGVFPAIIT S TRR RRF LRTVLAAKGISAP VLSF E EI 680
Cdd:PRK15337 627 DLLTLALDDL G IAHRDIVLLV S VDI RRF VKKLIEGRFPELE VLSF G EI 674
PRK05910
PRK05910
type III secretion system protein; Validated
16-665
5.78e-50
type III secretion system protein; Validated
Pssm-ID: 168293
Cd Length: 584
Bit Score: 183.84
E-value: 5.78e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 16 LALALMA I IVMM I L P V P A W V LD V GL AAS FA IAIL I FTVTLFIERPLDFSA FP TVL L ASLM LRL S LN VS ST KL I IG qghtg 95
Cdd:PRK05910 12 MVAIPLC I LFTL I F P L P Q W L LD F GL CIN FA LSLS I VFWVFSLRSSASARL FP SLF L YLCL LRL G LN LA ST RW I LS ----- 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 96 T G A A GDV I EGFA NF IMS GS VLIG L VVFGVILI VNF I VITKG AG R M AEV G ARF A L D A M PGKQ LAI D S D MNA G AIDHAEARA 175
Cdd:PRK05910 87 S G W A SPL I FSLG NF FSL GS LPAA L TACLLLFL VNF L VITKG SE R I AEV R ARF S L E A L PGKQ MSL D A D LVS G RASYSRVSK 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 176 RREREQA E TT FF GSLD G ASK FVKGDA VAGLLITLL N LVMGLII G T A VH gmpig R A LETYAILTV GD G LVSQ I PA VII S I A 255
Cdd:PRK05910 167 QKNSLLE E SD FF SAME G VFR FVKGDA IMSCILLGV N ILAATFL G R A TG ----- Y A VGDLWLTVL GD A LVSQ V PA LLT S C A 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 256 S A I L L S RG G A K G S ADME L FRQLGKYPPALMTVGV L MALF A LV PG L P flpfmv G A LV LG GAAQ L L rradqkrarrea MKMP 335
Cdd:PRK05910 242 A A T L I S KV G E K E S LLQH L LDYYEQSRQHFRFIAL L LCSL A CI PG A P ------ K A PI LG FSVL L F ------------ LAYK 303
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 336 P P EPAR rksmgdildv DDIHVEFAPDL V AM AL - D PAT G LD A RI - ANM R NHVAASF G LIL PE --- I R LTDDGA lppgty R I 410
Cdd:PRK05910 304 N P SSGE ---------- TLLFQKERFEF V EL AL p D EGV G NP A NL y RAA R EEIFQEL G VVF PE eiv V R HVESSP ------ R L 367
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 411 RIQ G V E QARDR L RPERV L ALI adn R D L L P agedvrepvygaparwvpaaaqeeavltgstvvsptevlathll E V I KRN F 490
Cdd:PRK05910 368 IFS G Q E VYLRE L SCPAI L PSL --- R N L A P -------------------------------------------- E A I SER F 400
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 491 arlmg LRA L RRLLE E T A NL S dptradanrri LD E L IP D K VPLDL L LAV LR L L LE ERVS IRNLLL I V EAIA e V R G L Q -- S P 568
Cdd:PRK05910 401 ----- VKR L VEEFQ E V A GI S ----------- IE E I IP K K ISENS L VFL LR A L VR ERVS LHLFPK I L EAIA - V Y G S Q gk S S 463
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2421968589 569 E AIC E H VR QR LG F Q L - VAEYR R E D g TL PLLQLAPEW E DTFTTYQLQTD rgpadvalp PD KFNRL VA N V SDKIA R A GE SG v 647
Cdd:PRK05910 464 E ELV E K VR KY LG K Q I g RSLWN R Q D - TL EVITIDSHV E QFIRDSYSKSN --------- PD MNEKV VA Q V KSLLE R S GE GN - 532
650
....*....|....*...
gi 2421968589 648 F P AI I T STRR R RF L RTVL 665
Cdd:PRK05910 533 F R AI V T GCET R FE L KKMV 550
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01