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Conserved domains on  [gi|2414086378|gb|WAR69321|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Dodona eugenes]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 6.50e-135

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 384.51  E-value: 6.50e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2414086378 246 VMVYMGGYSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 6.50e-135

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 384.51  E-value: 6.50e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2414086378 246 VMVYMGGYSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
12-303 1.42e-96

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 287.06  E-value: 1.42e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  12 GLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFILSLI 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  92 IWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMSFNL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 170 MKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFVMVY 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 250 MGGYSM------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLL 303
Cdd:pfam00146 241 LGGWLGpfplpgLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-312 9.62e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 283.56  E-value: 9.62e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   1 MLLIDMMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYL 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  81 SPIIGFILSLIIWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMM 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 159 SSLIMIMSFNLMKLDLYQ-NKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSM 237
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 238 ILFMSMLFVMVYMGGYSM------------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFI 305
Cdd:COG1005   243 MFLVSALATTLFLGGWLGpfpilplgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTA 322


                  ....*..
gi 2414086378 306 GLKILLN 312
Cdd:COG1005   323 AVVLLFG 329
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
9-311 1.70e-47

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 162.57  E-value: 1.70e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   9 IMIGLIILVI--GVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGF 86
Cdd:NF040610   10 WIRGLVGLALigAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  87 ILSLIIWLLIPYYFNLIS----------FNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALI 156
Cdd:NF040610   90 GSVFLMLVAIPFGAVIINgveyplvvtnMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGIC 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 157 MMSSLIMIMSFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYS 236
Cdd:NF040610  170 VVSVAIMAGSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYI 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 237 MILFMSMLFVMVYMGGYSM---------------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFL 301
Cdd:NF040610  250 HLILGSFLVVLLFLGGWNLpgfvtdipvlgiilpTLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNL 329

                         330
                  ....*....|
gi 2414086378 302 LLFIGLKILL 311
Cdd:NF040610  330 GWAIALGLYL 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 6-311 6.50e-135

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 384.51  E-value: 6.50e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2414086378 246 VMVYMGGYSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-307 1.22e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 343.39  E-value: 1.22e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   7 MNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGF 86
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  87 ILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMS 166
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 167 FNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFV 246
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2414086378 247 MVYMGGYSM-----SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGL 307
Cdd:MTH00143  241 VLFFGGSSVlfllgGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 7-309 9.42e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 341.24  E-value: 9.42e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   7 MNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGF 86
Cdd:MTH00225    1 MSFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  87 ILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMS 166
Cdd:MTH00225   81 ILSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLT 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 167 FNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFV 246
Cdd:MTH00225  161 YNLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2414086378 247 MVYMGG--YSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKI 309
Cdd:MTH00225  241 ILFFGGffVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 6-307 6.73e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 311.07  E-value: 6.73e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00218    1 MLLSLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00218   81 LTLALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00218  161 GFSLEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLS 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2414086378 246 VMVYMGGYSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGL 307
Cdd:MTH00218  241 VILFLGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSL 302
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 6-312 2.08e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 302.43  E-value: 2.08e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2414086378 246 VMVYMGGySMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILLN 312
Cdd:MTH00195  241 TILFLGG-GGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALN 306
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 6-309 2.96e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 299.89  E-value: 2.96e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2414086378 246 VMVYMGGYSM-------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKI 309
Cdd:MTH00111  244 TILFLNPSTLnlppelfTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPI 314
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 6-312 1.33e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 298.07  E-value: 1.33e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIM 165
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 166 SFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLF 245
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2414086378 246 VMVYMGG---------YSMSLIfyFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILLN 312
Cdd:MTH00071  244 TILFLGStynhlqpelSTMNLM--IKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTL 317
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 10-311 3.14e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 297.31  E-value: 3.14e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  10 MIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFILS 89
Cdd:MTH00104    3 MINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLA 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  90 LIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMSFNL 169
Cdd:MTH00104   83 LTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 170 MKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFVMVY 249
Cdd:MTH00104  163 STLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTILF 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2414086378 250 MGGY-------SMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00104  243 LGAFhnpympeLYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMT 311
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 6-311 2.14e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 295.36  E-value: 2.14e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLII----LVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLS 81
Cdd:MTH00134    1 MLSTLITHIInplaYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  82 PIIGFILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSL 161
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 162 IMIMSFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFM 241
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2414086378 242 SMLFVMVYMGGYSM-------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00134  241 NTLSAILFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAF 317
NADHdh pfam00146
NADH dehydrogenase;
12-303 1.42e-96

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 287.06  E-value: 1.42e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  12 GLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFILSLI 91
Cdd:pfam00146   1 KILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  92 IWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMSFNL 169
Cdd:pfam00146  81 AFAVIPFgpGLVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 170 MKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFVMVY 249
Cdd:pfam00146 161 SEIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLF 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 250 MGGYSM------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLL 303
Cdd:pfam00146 241 LGGWLGpfplpgLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 9-312 1.67e-96

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 287.64  E-value: 1.67e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   9 IMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFIL 88
Cdd:MTH00040    6 FLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  89 SLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMSFN 168
Cdd:MTH00040   86 ALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFS 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 169 LMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFVMV 248
Cdd:MTH00040  166 LSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVIL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2414086378 249 YMGGYSM--------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILLN 312
Cdd:MTH00040  246 FLGGGSPfneifpinIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLN 317
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 6-312 2.57e-95

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 284.70  E-value: 2.57e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIG 85
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIM 163
Cdd:MTH00054   81 LTLAFIAWGVIPYgeGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 164 IMSFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSM 243
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2414086378 244 LFVMVYMGGY----------SMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILLN 312
Cdd:MTH00054  241 FGVILFLGGWlvisgptsyfSNFVWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFN 319
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 1-312 9.62e-95

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 283.56  E-value: 9.62e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   1 MLLIDMMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYL 80
Cdd:COG1005     3 LLLAPLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  81 SPIIGFILSLIIWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMM 158
Cdd:COG1005    83 APILAFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 159 SSLIMIMSFNLMKLDLYQ-NKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSM 237
Cdd:COG1005   163 GVVLLAGSLNLSEIVEAQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYAN 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 238 ILFMSMLFVMVYMGGYSM------------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFI 305
Cdd:COG1005   243 MFLVSALATTLFLGGWLGpfpilplgglpgILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVLTA 322


                  ....*..
gi 2414086378 306 GLKILLN 312
Cdd:COG1005   323 AVVLLFG 329
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-312 1.06e-92

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 278.16  E-value: 1.06e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   2 LLIDMMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLS 81
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  82 PIIGFILSLIIWLLIPYYFN-LIS-FNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMS 159
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYERGvLISdFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 160 SLIMIMSFNLMKLDLYQNK-IWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMI 238
Cdd:MTH00216  161 VLLCVGSLSITEIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 239 LFMSMLFVMVYMGGYSM--------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKIL 310
Cdd:MTH00216  241 ILMSCLTTILFLGGWLSpikyfkggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFG 320


                  ..
gi 2414086378 311 LN 312
Cdd:MTH00216  321 FN 322
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
9-303 1.95e-87

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 264.75  E-value: 1.95e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   9 IMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFIL 88
Cdd:PRK06076   12 ILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIP 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  89 SLIIWLLIPY--YFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMS 166
Cdd:PRK06076   92 AFLAWAVIPFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGS 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 167 FNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFV 246
Cdd:PRK06076  172 LNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALIT 251

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2414086378 247 MVYMGGYSM----------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLL 303
Cdd:PRK06076  252 TLFLGGWLPpfplgggipgAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 7-311 2.53e-86

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 261.64  E-value: 2.53e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   7 MNI--MIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPII 84
Cdd:MTH00010    1 MNIsfFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  85 GFILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMI 164
Cdd:MTH00010   81 SLILALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 165 MSFNLMKLdLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSML 244
Cdd:MTH00010  161 QTFSFSKI-IMSQYSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLF 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2414086378 245 FVMVYMG----GYSMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKILL 311
Cdd:MTH00010  240 TSVFFTSfipsIFISDLMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 1-312 4.89e-75

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 233.76  E-value: 4.89e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   1 MLLIDMMNIMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYL 80
Cdd:MTH00029    1 MTIYSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  81 SPIIGFILSLII--WLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMM 158
Cdd:MTH00029   81 APIISFTLAILAwaIVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIII 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 159 SSLIMIMSFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMI 238
Cdd:MTH00029  161 SVILCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 239 LFMSMLFVMVYMGGY-----------------------SMSLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLP 295
Cdd:MTH00029  241 ILMSCMMTIFFLGGWlspldgiptppeafsifeqiassKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLP 320

                         330
                  ....*....|....*..
gi 2414086378 296 VSLNFLLLFIGLKILLN 312
Cdd:MTH00029  321 LSLGLVILTAGILIGFN 337
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 12-309 1.40e-62

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 199.74  E-value: 1.40e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  12 GLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFILSLI 91
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  92 IWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMSFNLMk 171
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 172 ldlYQNKIWFIFIMFPlsmcFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFVMVYMG 251
Cdd:MTH00090  160 ---SSFSLSLFVIYLP----FLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2414086378 252 gysMSLIFYFkltLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFIGLKI 309
Cdd:MTH00090  233 ---FSFLMLF---LIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 10-305 3.62e-51

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 170.49  E-value: 3.62e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  10 MIGLIILVIGVLISL---AFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGF 86
Cdd:MTH00058    1 IFGLVSGLEGLLIILllvAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  87 ILSLIIWLLIPYYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIMIMS 166
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 167 FNLMklDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILFMSMLFV 246
Cdd:MTH00058  161 YSLV--DFYYSGWLSVLLFPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGS 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2414086378 247 MVYMGGYSMSLIFYFKLtlisFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFI 305
Cdd:MTH00058  239 VLFFGGGFVSIMLLFHL----LFFMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
9-311 1.70e-47

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 162.57  E-value: 1.70e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   9 IMIGLIILVI--GVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGF 86
Cdd:NF040610   10 WIRGLVGLALigAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  87 ILSLIIWLLIPYYFNLIS----------FNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALI 156
Cdd:NF040610   90 GSVFLMLVAIPFGAVIINgveyplvvtnMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGIC 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 157 MMSSLIMIMSFNLMKLDLYQNKIWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYS 236
Cdd:NF040610  170 VVSVAIMAGSLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYI 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 237 MILFMSMLFVMVYMGGYSM---------------SLIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFL 301
Cdd:NF040610  250 HLILGSFLVVLLFLGGWNLpgfvtdipvlgiilpTLFFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNL 329

                         330
                  ....*....|
gi 2414086378 302 LLFIGLKILL 311
Cdd:NF040610  330 GWAIALGLYL 339
ndhA CHL00032
NADH dehydrogenase subunit 1
 9-311 1.44e-46

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 160.50  E-value: 1.44e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   9 IMIGLIILVIGVLISLAFLTLMERKVLGYIQIRKGPNKLGFMGLLQPFSDGLKLFSKEMIYPNYSNYLFYYLSPIIGFIL 88
Cdd:CHL00032   29 ILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVIS 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  89 SLIIWLLIPYYFNLI--SFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSslIMIMS 166
Cdd:CHL00032  109 ILLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS--ISLLS 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 167 FNLMKLDLY--QNK-------IWFIFIMFplsMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYsM 237
Cdd:CHL00032  187 NSLSTVDIVeaQSKygfwgwnLWRQPIGF---IVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY-L 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 238 ILFMSMLFVMV-YMGGYSMSLIFYF-------------------------KLTLISFMFIWIRGTLPRYRYDKLMYLCWK 291
Cdd:CHL00032  263 NLLVSSLFVTVlYLGGWNLSIPYIFipelfeinktggvfgttigifitlaKTYLFLFISITTRWTLPRLRMDQLLNLGWK 342

                         330       340
                  ....*....|....*....|
gi 2414086378 292 SYLPVSLNFLLLFIGLKILL 311
Cdd:CHL00032  343 FLLPISLGNLLLTTSFQLLS 362
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-305 2.71e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 110.66  E-value: 2.71e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378   6 MMNIMIGLIILVIGVLISLaFLTLMERKVLGYIQIRKGPnklgfmGLLQPFSDGLKLFSKEMIYPNYSNYLFYyLSPIIG 85
Cdd:COG0650     1 MMLILLALLQLLLALLLAP-LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFR-AAPYVA 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378  86 FILSLIIWLLIP--YYFNLISFNLGILFFLCSISLGVYVLLMAGWSSNSNYSLLGGLRAVAQTISYEVSLALIMMSSLIM 163
Cdd:COG0650    73 LAAMLLAALLVPvlTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2414086378 164 IMSFNLMKLDLYQNK---IWFIFIMFPLSMCFLSSLMAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAEYSMILF 240
Cdd:COG0650   153 AGSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFV 232

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2414086378 241 MSMLFVMVYMGGYSMS------LIFYFKLTLISFMFIWIRGTLPRYRYDKLMYLCWKSYLPVSLNFLLLFI 305
Cdd:COG0650   233 LLSLFVNLFLPWGIALtlllalLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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