|
Name |
Accession |
Description |
Interval |
E-value |
| PQQ_ADH_I |
cd10277 |
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); ... |
42-572 |
0e+00 |
|
Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase); This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.
Pssm-ID: 199835 [Multi-domain] Cd Length: 529 Bit Score: 784.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 42 RLTAAQSDPGWLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSYKFPaDLQQGFEATPIVNGRYLFVTTPKDNVYAFDAST 121
Cdd:cd10277 1 LLNDAKETGNWLTYGRGYNGQRYSPLKQINTDNVKNLVPAWSFSFG-GKQRGQESQPIVNDGVMYVTTSYNRVFAIDAKT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 122 GKQLWKFEPKLGAESFktACCDVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGAL 201
Cdd:cd10277 80 GKELWKYKHRLPEDIR--PCCDVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 202 VVGSAGGEYGARGFIAALNPDDGNVLWKRFTVPAAGEKGG-DTWPNGMQEHGGAPAWLTGTYDAASKTLYWGVGNPGPWL 280
Cdd:cd10277 158 IVGVSGGEFGVRGFIAALDAETGKEVWRTYTVPGPGEPGStDTWPGDAWKTGGGATWLTGTYDPETNLLYWGVGNPAPWN 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 281 ADLRPGDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIHADRNGFFHAIDRGTGKLIY 360
Cdd:cd10277 238 GDLRPGDNLYTSSVLALDPDTGKIKWHYQYTPNDTWDYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYVLDRTNGKLIW 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 361 AKPFVTATSVT-GYTADGVPIQDASK-YPKAGTTIETCPSFLGGKNWWSVSYDPDKHIAVVPALHACMSLSGKSVNYMEG 438
Cdd:cd10277 318 ATPFVKKITWAsIDLKTGRPIYDEDKvPPKKGKTVDFCPSFLGGKNWPPMAYSPDTGLFYVPANHWCMDLTGEPVSYKKG 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 439 LPYLGEGFEIKPePGSKGYGELQAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSPKL 518
Cdd:cd10277 398 AAYLGAGFTIKP-PFEDHIGELQAIDPTTGKKVWEHKTPLPLWGGVLTTAGGLVFTGTPDGYFRAFDAKTGKELWEFQTG 476
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1768673239 519 aSGIVAQPSVFEVDGKEYVAILAGYGGANPIWGGPMAKAAEKVPRGGTLYVFAL 572
Cdd:cd10277 477 -SGIIGPPVTWEVDGKQYVAVLSGWGGAAPLWGGDMAKLLKNVPQGGSLWVFAL 529
|
|
| Gcd |
COG4993 |
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism]; |
52-572 |
0e+00 |
|
Glucose dehydrogenase, PQQ-dependent [Carbohydrate transport and metabolism];
Pssm-ID: 444017 [Multi-domain] Cd Length: 515 Bit Score: 627.57 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 52 WLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSYKFPADLQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPK 131
Cdd:COG4993 5 WLAYGGDYAGQRYSPLDQINPDNVKKLKVAWTFSTGDLPERGHEATPLVVDGVLYVCTPHNRVFALDAATGKELWRYDPK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 132 LGAEsfkTACCDVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGEYG 211
Cdd:COG4993 85 LPDD---AACCDVVNRGVAYYDGRIFLGTLDGRLVALDAKTGKVCWDVKVGDPKKGYTITSAPLVVKDKVIVGGSGGEFG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 212 ARGFIAALNPDDGNVLWKRFTVPAAGEKGGDTWPNG-MQEHGGAPAWLTGTYDAASKTLYWGVGNPGP-WLADLRPGDNL 289
Cdd:COG4993 162 PRGVVRAYDARTGKLVWRFDTIPDPGEPGAETWPPGdTWKRGGGNVWGTMSYDPELGLVYLPTGNPAPdWNGGQRPGDNL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 290 YSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIHADRNGFFHAIDRGTGKLIYAKPFV-TAT 368
Cdd:COG4993 242 YSSSIVALDADTGELKWHYQTVPHDLWDYDGPNEPILVDLPVDGKTRKALVQATKNGFIYVLDRETGEPLVTQPFVkPPN 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 369 SVTGYTADGV-PIQDAskYPKAGTTIETCPSFLGGKNWWSVSYDPDKHIAVVPALHACMSLSGKSVNYMEGLPYLGEGFE 447
Cdd:COG4993 322 WATEIDMWGAtPIQTP--PSLDGKTTLICPGALGGKNWGPAAYDPETGLLYVPANELCMDYELVPREYQAGAPYLGATLT 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 448 IKPEPGSkGYGELQAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQPS 527
Cdd:COG4993 400 MYPCPAP-PWGTLTAIDLNTGKIVWQVPLGFPNWGGPLATAGGLVFIGTLDGYLRAFDAKTGKELWKF-RLPSGGQATPM 477
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1768673239 528 VFEVDGKEYVAILAGYGGANPIWGgpmakaaeKVPRGGTLYVFAL 572
Cdd:COG4993 478 TYEVDGKQYVAVAAGGGGWLGLGL--------YTPQGDYLIAFAL 514
|
|
| PQQ_enz_alc_DH |
TIGR03075 |
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic ... |
35-545 |
0e+00 |
|
PQQ-dependent dehydrogenase, methanol/ethanol family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Pssm-ID: 274419 [Multi-domain] Cd Length: 527 Bit Score: 569.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 35 YPAVTYERLTAAQSDPG-WLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSYKFpaDLQQGFEATPIVNGRYLFVTTPKDN 113
Cdd:TIGR03075 3 AAAVTNEDLLNDAKDPSdWLTYGGGYAGQRYSPLDQINTDNVKKLQPAWTFSL--GKQRGQESQPLVVDGVMYVTTSYSR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 114 VYAFDASTGKQLWKFEPKLGAESFKTACCDVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLA 193
Cdd:TIGR03075 81 VYALDAKTGKILWKYDPKLPDDIIPVMCCDVVNRGAALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 194 PLALDGALVVGSAGGEYGARGFIAALNPDDGNVLWKRFTVP------------AAGEKGGDTWPNGMQEHGGAPAWLTGT 261
Cdd:TIGR03075 161 PLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPgdmgylkktgkpVGGDPGAKTWPGDAWKTGGGATWGTGS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 262 YDAASKTLYWGVGNPGPWLADLRPGDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIH 341
Cdd:TIGR03075 241 YDPETNLIYFGTGNPAPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAH 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 342 ADRNGFFHAIDRGTGKLIYAKPFV-TATSVTGY-TADGVPIQDA---SKYPKAGTTIETCPSFLGGKNWWSVSYDPDKHI 416
Cdd:TIGR03075 321 ADRNGFFYVLDRTNGKLLSAEPFVdKVNWATGVdLKTGRPIEVPearSTDGKKGKPVEVCPGFLGGKNWQPMAYSPKTGL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 417 AVVPALHACMSLSGKSVNYMEGLPYLGEGFEIKPEPGSKGyGELQAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGS 496
Cdd:TIGR03075 401 FYVPANHVCMDYWPEKVSYKKGAAYLGAGFTIKPPPDDHI-GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFTGT 479
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1768673239 497 LDGHLYAFDETTGKVLWQSpKLASGIVAQPSVFEVDGKEYVAILAGYGG 545
Cdd:TIGR03075 480 LEGYFKAFDAKTGEELWKF-KTGSGIVGPPVTYEQDGKQYVAVLSGWGG 527
|
|
| PQQ_ADH_II |
cd10279 |
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of ... |
52-572 |
8.74e-152 |
|
PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II); This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199837 [Multi-domain] Cd Length: 549 Bit Score: 447.09 E-value: 8.74e-152
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 52 WLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSYKFPADlqQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPK 131
Cdd:cd10279 3 WLSYGRDYDEQRFSPLTQINRSNVGQLGLAWYFDLDTN--RGQEATPLVVDGVMYVSGPWSVVYALDARTGKLLWQYDPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 132 LGAESFKTACCDVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGEYG 211
Cdd:cd10279 81 VDRESGRKACCDVVNRGVAVWDGKVFVGTLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 212 ARGFIAALNPDDGNVLWKRFTVPAAGEKGGD----------TWPNGMQEHG-GAPAWLTGTYDAASKTLYWGVGNPGPWL 280
Cdd:cd10279 161 VRGYVSAYDAETGKLVWRFYTVPGNPAKPFEhasleaaaatWWTGEWWRTGgGGTVWDSITYDPELDLLYIGTGNGSPWN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 281 ADLRP---GDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIHADRNGFFHAIDRGTGK 357
Cdd:cd10279 241 RKVRSpggGDNLFLSSIVALDADTGRYKWHYQTTPGDTWDYTATQPIILADLEIDGKPRKVLMHAPKNGFFYVLDRATGK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 358 LIYAKPFVTATSVTGY-TADGVPIQDA-SKYPKAGTTIetCPSFLGGKNWWSVSYDPDKHIAVVPALHA--CMSLSGKSV 433
Cdd:cd10279 321 LLSAEPFVPVNWATGIdLKTGRPIENPeARYTKGPKLV--FPGPLGAHNWHPMSYNPDTGLVYIPAQEIpaVYEDDPGDF 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 434 NYMEGLPYLGEGFEIKPEPGS-------KGYGELQAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGSLDGHLYAFDE 506
Cdd:cd10279 399 GYNPLGWNTGITPDATPPPAAakralrkATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTADGELAAYDA 478
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1768673239 507 TTGKVLWQSPkLASGIVAQPSVFEVDGKEYVAILAGYGGANPIWGGPMAKAAeKVPRGGTLYVFAL 572
Cdd:cd10279 479 RTGEKLWSFD-TGSGIVAAPMTYSVDGEQYVAVLAGWGGAGALSGGPPGAAG-KVQNPGRLLVFKL 542
|
|
| PQQ_MDH |
cd10278 |
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the ... |
52-572 |
2.26e-151 |
|
Large subunit of methanol dehydrogenase (moxF); Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits.
Pssm-ID: 199836 [Multi-domain] Cd Length: 553 Bit Score: 446.00 E-value: 2.26e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 52 WLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSykFPADLQQGFEATPIVNGRYLFVTTP-KDNVYAFD-ASTGKQLWKFE 129
Cdd:cd10278 1 WVMPGKDYANTRYSPLAQINKDNVKNLKVAWT--FSTGVLRGHEGAPLVVGDTMYVVTPfPNNVYALDlNDPGKILWKYK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 130 PKLGAESFKTACCDVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGE 209
Cdd:cd10278 79 PKQDPSAVAVACCDVVNRGLAYADGKIFFNQLDGHLVALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 210 YGARGFIAALNPDDGNVLWK--------------RFTVPAAGEKGGD----TWPNGMQEHGGAPAWLTGTYDAASKTLYW 271
Cdd:cd10278 159 FGVRGYVTAYDLKTGKLVWRaystgpdkdvligpDFNPFNPHDGGKDlglsTWPGDAWKIGGGTNWGWYSYDPKLNLVYY 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 272 GVGNPGPWLADLRPGDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIHADRNGFFHAI 351
Cdd:cd10278 239 GTGNPGPWNPTQRPGDNKWSMTIFARDPDTGEAKWAYQMTPHDEWDYDGVNEMILVDQTVDGKKRKLLVHFDRNGFVYTL 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 352 DRGTGKLIYAKPFVTATSVTGYTAD-GVPIQDASKYPKAG-TTIETCPSFLGGKNWWSVSYDPDKHIAVVPALHACMSLS 429
Cdd:cd10278 319 DRTTGELLSAEKFDPVNNWKGVDLKtGRPVKDPEKSTHMDhNVTDICPSAMGGKDQQPSSYSPKTGLFYVPTNHLCMDYE 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 430 GKSVNYMEGLPYLGEGFEIKPEPGSkGYGELQAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGSLDGHLYAFDETTG 509
Cdd:cd10278 399 PFEVNYTAGQPYVGATLAMYPGPGG-HMGQFKAWDPVTGKTKWEIKERFPVWSGTLATAGGLVFYGTLDGWFKAVDAKTG 477
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1768673239 510 KVLWQSpKLASGIVAQPSVFEVDGKEYVAILAGYGG----------ANPIWG----GPMAKAAEKVPRGGTLYVFAL 572
Cdd:cd10278 478 KLLWKF-KLPSGIIGNPITYKHDGKQYVAVLSGVGGwagvgvaaglRDPTAGlgavGAFKDLPNYTQMGGTLYVFSL 553
|
|
| PQQ_DH_like |
cd00216 |
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases ... |
74-571 |
1.05e-107 |
|
PQQ-dependent dehydrogenases and related proteins; This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ.
Pssm-ID: 199833 [Multi-domain] Cd Length: 434 Bit Score: 329.95 E-value: 1.05e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 74 NVKNLKQVWSYKFPADLQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGAESFKtACCDVINRGVALYG 153
Cdd:cd00216 3 NVFQLTPAWSFSTGDGGNRGSELTPIVVDGVMYATTSFSRVFALDADDGKEIWSYDPALKDGWFE-ACCDLVNRGVAVWG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 154 KNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGEYGARGFIAALNPDDGNVLWKRFTV 233
Cdd:cd00216 82 GKVYIGVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGYLTAYDVATGEEKWRFYLV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 234 P-----------AAGEKGGDTWPNGMQEHGGAPAWLTGTYDAASKTLYWGVGNPGPWL--ADLRPGDNLYSDSLLALDPK 300
Cdd:cd00216 162 MpdpnllpgkdsTVTDRNTPTGDEHTWTSGGGTGWSSAAYDAELNLIYVGGGNPTPWNwgGNRTPGDNLYTSSIVAVNAD 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 301 TGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAIIHADRNGFFHAIDRGTGKLIYAKPFVtatsvtgytadgvpi 380
Cdd:cd00216 242 TGEMKWQYQTTPHDAWDYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARPLV--------------- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 381 qdaskypkagttietcpsflggknwwSVSYDPDKHIAVVPAlhacmslsgksvnymeglpylgegfeikpepgskgYGEL 460
Cdd:cd00216 307 --------------------------PDSYDPDRELFYVPA-----------------------------------NGRI 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 461 QAINVDTGKKVWSHWSKLPWNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQPSVFEVDGKEYVAIL 540
Cdd:cd00216 326 MALDPVTGVVVWEKSELHPLLGGPLSTAGNLVFVGTSDGYLKAYNADTGEKLWQQ-KVPSGFQAEPVTYEVDGEQYVLIQ 404
|
490 500 510
....*....|....*....|....*....|.
gi 1768673239 541 AGYGGANPIWGGpMAKAAEKVPRGGTLYVFA 571
Cdd:cd00216 405 AGGGGAFPLWGG-MADLTRGTQMGGTVVVYK 434
|
|
| PQQ_mGDH |
cd10280 |
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes ... |
52-572 |
2.98e-95 |
|
Membrane-bound PQQ-dependent glucose dehydrogenase; This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller.
Pssm-ID: 199838 [Multi-domain] Cd Length: 616 Bit Score: 303.34 E-value: 2.98e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 52 WLTYYRTYNGQAHSPLKQIDTANVKNLKQVWSYK----FPADLQQG-FEATPIVNGRYLFVTTPKDNVYAFDASTGKQLW 126
Cdd:cd10280 1 WPAYGGDPGGTRYSPLDQITPDNVGKLKVAWTYHtgdlPGPDGNEGtFEATPLKVGGTLYLCTPHNRVIALDAATGKELW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 127 KFEPKLGAESFKTAccdVINRGVALY---------GKNVYVAMLSGDVVALDAQTGALAW----------RKQMFEPGVG 187
Cdd:cd10280 81 RFDPKAGADAAPGH---QTCRGVSYWedgaaaaacARRIFFGTGDARLIALDARTGKPCPdfgdngvvdlREGLGRVKPG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 188 YAFSL-APLALDGALVVGSAGGEY----GARGFIAALNPDDGNVLWKRFTVPAAGEKGGDTwpNGMQEH-GGAPAWLTGT 261
Cdd:cd10280 158 FYSSTsPPTVYGDLVIVGSAVADNqavdAPSGVIRAFDVRTGKLVWAFDTIPPPGEAGPDT--AGAWYTrGGPNVWAGMS 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 262 YDAASKTLYWGVGNPGP--WLADlRPGDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYEDKEYDAI 339
Cdd:cd10280 236 ADEKLGLVYLPTGSATPdfYGGD-RPGDNLFANSLVALDAATGKRRWHFQTVHHDLWDYDLPAQPTLVDVPRDGKTVPAV 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 340 IHADRNGFFHAIDRGTGKLIY------------------------------AKPFVTATSVTGYTADG---VPIQDASKY 386
Cdd:cd10280 315 AQPTKQGFVFVLDRRTGKPLWpveerpvpqgdvpgertsptqpfptlpppfARQGLTEDDMWGATPFDqlaCRIQFRSLR 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 387 --------PKAGTTIEtcPSFLGGKNWWSVSYDPDKHIAVVPALHACM---------SLSGKSVNYMEGLPYLGEGFEIK 449
Cdd:cd10280 395 yeglftppSLDGTLIF--PGNDGGANWGGAAVDPERGILYVNSNRLPFviqlvprapGDPAGVAGGGEGGGGGGGPSPQA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 450 PEPGSKG----------------YGELQAINVDTGKKVWSH-----------WSKLPW------NGGVATTAGGLAF-SG 495
Cdd:cd10280 473 GTPYGVGrgrflsplglpcqappWGTLTAIDLNTGKILWQVplgtvpdlgpkGIPLPIptgtpnLGGPVVTAGGLVFiAA 552
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1768673239 496 SLDGHLYAFDETTGKVLWQSpKLASGIVAQPSVFEVDGKEYVAILAGyGGANPiwggpmakaaeKVPRGGTLYVFAL 572
Cdd:cd10280 553 TQDNYLRAFDKATGKELWEA-RLPAGGQATPMTYEVDGKQYVVIAAG-GHGSL-----------GTKRGDSVIAYAL 616
|
|
| PQQ_membr_DH |
TIGR03074 |
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein ... |
2-542 |
1.28e-65 |
|
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Pssm-ID: 274418 [Multi-domain] Cd Length: 764 Bit Score: 227.96 E-value: 1.28e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 2 KARLASATRPTALAMSVAVAVSLVLGSA---------AAADDYPAVTYERLTAAQSDPGWLTYYRTYNGQAHSPLKQIDT 72
Cdd:TIGR03074 79 RPRSVGPARRGAGALAGVLAVAVLAALAsmftdphpiVGALDTEVPATAAAAPAVPAGDWAAYGRTQAGQRYSPLDQINP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 73 ANVKNLKQVWSY-----KFPAD-LQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGAESFK--TACcdv 144
Cdd:TIGR03074 159 DNVGNLKVAWTYhtgdlKTPDDpGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEADRqhQTC--- 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 145 inRGVALY------------------GKNVYVAMLSGDVVALDAQTGALA----------WRKQMFEPGVGYAFSL-APL 195
Cdd:TIGR03074 236 --RGVSYYdapaaaagpagpaapadcARRIILPTSDARLIALDADTGKLCedfgnngtvdLTAGMGPTPPGYYYPTsPPL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 196 ALDGALVVGSA----GGEYGARGFIAALNPDDGNVLWK-------RFTVPAAGEkggdTWPngmqeHGGAPAWLTGTYDA 264
Cdd:TIGR03074 314 VAGTTVVIGGRvadnYSTDEPSGVIRAFDVNTGALVWAwdpgnpdPTAPPAPGE----TYT-----RNSPNSWSVASYDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 265 ASKTLYWGVGNPGP--WLADLRPGDNLYSDSLLALDPKTGDLKWHYQYTKHDTWDYDGVNTPVLATIKYED-KEYDAIIH 341
Cdd:TIGR03074 385 KLGLVYLPMGNQTPdqWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPKADgTTVPALVA 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 342 ADRNGFFHAIDRGTGKLIYAkpfVTATSVTG------YTADGVPIQDASKYPKA-------GTT---------------- 392
Cdd:TIGR03074 465 PTKQGQIYVLDRRTGEPIVP---VEEVPVPQgavpgeRYSPTQPFSVLTFGPPTltesdmwGATpfdqlacriqfkslry 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 393 --IETCPS---------FLGGKNWWSVSYDPDKHIAVV-------------------PALHACMSLSGKSVNYMEGLPYl 442
Cdd:TIGR03074 542 egLYTPPSeqgslvfpgNLGGFNWGGVAVDPTRQVMFVnpmrlpfvsqlvprapgdeAPSGAKGKGTEMGLNPNKGTPY- 620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 443 geGFEIKPEPGSKG-------YGELQAINVDTGKKVWSH-------------WSKLPW------NGGVATTAGGLAF-SG 495
Cdd:TIGR03074 621 --AVNMNPFLSPLGipcqappWGYMAAIDLKTGKVVWQHpngtvrdtgpmgiPMPLPIpigvptLGGPLATAGGLVFiGA 698
|
650 660 670 680
....*....|....*....|....*....|....*....|....*...
gi 1768673239 496 SLDGHLYAFDETTGKVLWQSpKLASGIVAQPSVF-EVDGKEYVAILAG 542
Cdd:TIGR03074 699 TQDNYLRAYDLSTGKELWEA-RLPAGGQATPMTYmGKDGKQYVVIVAG 745
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
79-306 |
1.22e-18 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 85.15 E-value: 1.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 79 KQVWSykfpADLQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFepKLGAESFKTaccDVINRGValygknVYV 158
Cdd:pfam13360 14 AELWR----VDLETGLGGGVAVDGGRLFVATGGGQLVALDAATGKLLWRQ--TLSGEVLGA---PLVAGGR------VFV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 159 AMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGEygargfIAALNPDDGNVLWKR-------- 230
Cdd:pfam13360 79 VAGDGSLIALDAADGRRLWSYQRSGEPLALRSSGSPAVVGDTVVAGFSSGK------LVALDPATGKVRWEAplaaprgt 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 231 ----FTVPAAGE---KGGDTWPNGMQEHGGApawltgtYDAASKTLYW--GVGNP-GPWLAdlrpGDNLYSDS----LLA 296
Cdd:pfam13360 153 neleRLVDITGTpvvAGGRVFASAYQGRLVA-------FDAATGRRLWtrEISGPnGPILD----GDLLYVVSddgeLYA 221
|
250
....*....|
gi 1768673239 297 LDPKTGDLKW 306
Cdd:pfam13360 222 LDRATGAVVW 231
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
26-378 |
3.36e-18 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 86.41 E-value: 3.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 26 LGSAAAADDY---PAVTYERLTAAqsdpgwltyyrTYNGQahspLKQIDtanVKNLKQVWSykfpADLQQGFEATPIVNG 102
Cdd:COG1520 40 VGDGVGKGYSrlaPAVAGDRVYAA-----------DADGR----VAALD---AATGKELWR----VDLGEPLSGGVGADG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 103 RYLFVTTPKDNVYAFDASTGKQLWKfePKLGAESFKTAccdVINRGValygknVYVAMLSGDVVALDAQTGALAWRKQMF 182
Cdd:COG1520 98 GLVVVGTEDGEVIALDADDGEELWR--ARLSSEVLAAP---AVAGGR------VVVRTGDGRVYALDAATGERLWSYQRP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 183 EPgvgyAFSL----APLALDGALVVGSAGGEygargfIAALNPDDGNVLW-KRFTVPaagekggdtwpngmqeHG----- 252
Cdd:COG1520 167 VP----ALTLrgtsSPVIVGGAVLVGFANGK------LVALDLANGQPLWeQRVAQP----------------RGrtele 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 253 ------GAPAWLTGT------------YDAASKTLYW-----GVGNPGpwlADlrpGDNLY----SDSLLALDPKTGDLK 305
Cdd:COG1520 221 rlvdvdGTPVVDGGVvyavayqgrlaaLDLRSGRVLWsrdlsSYTGLA---VD---GNNLYvtddDGRVWALDRRNGAEL 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 306 WhyqytKHDTWDYDGVNTPVLATikyedkeyDAIIHADRNGFFHAIDRGTGKL----------IYAKPFVTATSVTGYTA 375
Cdd:COG1520 295 W-----KQDALLYRGLTAPVVLG--------DYVVVGDFEGYLHWLSRDDGSLvarlrvdgsgIRAAPVVVGDTLYVQTR 361
|
...
gi 1768673239 376 DGV 378
Cdd:COG1520 362 DGT 364
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
110-377 |
8.02e-16 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 77.06 E-value: 8.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 110 PKDNVYAFDASTGKQLWKF--EPKLGAesfktaccdvinrGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVG 187
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVdlETGLGG-------------GVAVDGGRLFVATGGGQLVALDAATGKLLWRQTLSGEVLG 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 188 yafslAPLALDGALVVGSAGGEygargfIAALNPDDGNVLWKrftvpaagekggdtwpngmQEHGGAPAWLTGtydAASK 267
Cdd:pfam13360 68 -----APLVAGGRVFVVAGDGS------LIALDAADGRRLWS-------------------YQRSGEPLALRS---SGSP 114
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 268 TLYwgvgnpgpwladlrpGDNLY----SDSLLALDPKTGDLKWHYQYTK-HDTWDYDGVNTPVLATIKYEDKEYdAIIHa 342
Cdd:pfam13360 115 AVV---------------GDTVVagfsSGKLVALDPATGKVRWEAPLAApRGTNELERLVDITGTPVVAGGRVF-ASAY- 177
|
250 260 270
....*....|....*....|....*....|....*
gi 1768673239 343 drNGFFHAIDRGTGKLIYAKPFvtaTSVTGYTADG 377
Cdd:pfam13360 178 --QGRLVAFDAATGRRLWTREI---SGPNGPILDG 207
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
65-230 |
1.64e-14 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 75.35 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 65 SPLKQIdTANVKnLKQVWS---YKFPADLQQGFeaTPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFepKLGAEsfktac 141
Cdd:TIGR03300 29 AELPEF-QPTVK-VDQVWSasvGDGVGHYYLRL--QPAVAGGKVYAADADGTVAALDAETGKRLWRV--DLDER------ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 142 cdvINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQ----MFEP--------------GVGYAFSLA---------- 193
Cdd:TIGR03300 97 ---LSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKlsseVLSPplvanglvvvrtndGRLTALDAAtgerlwtysr 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1768673239 194 ------------PLALDGALVVGSAGGEygargfIAALNPDDGNVLWKR 230
Cdd:TIGR03300 174 vtppltlrgsasPVIADGGVLVGFAGGK------LVALDLQTGQPLWEQ 216
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
70-360 |
2.60e-14 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 74.68 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 70 IDTANVKNLKQVWSYKFPADLQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWkfEPKLGAESFKTAccdvinrGV 149
Cdd:cd10276 6 PEPTPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDMVYAADANGQVSAFNATTGKIIW--ETSLSGKGFLGG-------TP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 150 ALYGKNVYVAMLSGDVVALDAQTGALAWRKQmfepgVGYAFSLAPLAL-DGALVVGSAGGEYgargfiAALNPDDGNVLW 228
Cdd:cd10276 77 AVGNGKIFVGTESGYLYALDAKDGSELWRTE-----VSDSQLLSPPTYaDGKIYVGTGDGRL------YYCNAETGKVVW 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 229 KRftvpaagekgGDTWPNGMQEHGGAPAWLTGTY------------DAASKTLYW--GVGNPGPWLADLR---------- 284
Cdd:cd10276 146 NR----------TSTAPELSLRGGAAPVGAYDVVfvgdgngtvvalNTGTGVDIWefSVSEPRGRTELPRmidssvtyvv 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 285 PGDNLYSDS----LLALDPKTGDLKWhyqytkhdTWDYDGVN-TPVLAtikyedkeYDAIIHADRNGFFHAIDRGTGKLI 359
Cdd:cd10276 216 VGGYLYSTSyqgyLVALDFESGQFLW--------SRKASGGTsTSTDA--------NGRVYVGDGEGSLYCLDASTGDEL 279
|
.
gi 1768673239 360 Y 360
Cdd:cd10276 280 W 280
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
65-228 |
5.82e-14 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 73.81 E-value: 5.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 65 SPLKQIDtaNVKNLKQVWSYKFPADLQQGFEA-TPIVNGRYLFVTTPKDNVYAFDASTGKQLWK--FEPKLGAES-FKTA 140
Cdd:PRK11138 33 SPLPQVE--NQFTPTTVWSTSVGDGVGDYYSRlHPAVAYNKVYAADRAGLVKALDADTGKEIWSvdLSEKDGWFSkNKSA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 141 ccdVINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMfepgVGYAFSlAPLALDGALVVgsaggeYGARGFIAALN 220
Cdd:PRK11138 111 ---LLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV----AGEALS-RPVVSDGLVLV------HTSNGMLQALN 176
|
....*...
gi 1768673239 221 PDDGNVLW 228
Cdd:PRK11138 177 ESDGAVKW 184
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
458-528 |
1.49e-11 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 65.99 E-value: 1.49e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1768673239 458 GELQAINVDTGKKVWSHWSKLPWNGGVATtAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQPSV 528
Cdd:COG1520 67 GRVAALDAATGKELWRVDLGEPLSGGVGA-DGGLVVVGTEDGEVIALDADDGEELWRA-RLSSEVLAAPAV 135
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
79-229 |
3.89e-11 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 63.19 E-value: 3.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 79 KQVWSYKFPADlqqgFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGAESFKTaccdviNRGVALYGKNVYV 158
Cdd:pfam13360 54 KLLWRQTLSGE----VLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLALRS------SGSPAVVGDTVVA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 159 AMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSL-----APLALDGALVVGSAG------------------GEYGARGF 215
Cdd:pfam13360 124 GFSSGKLVALDPATGKVRWEAPLAAPRGTNELERlvditGTPVVAGGRVFASAYqgrlvafdaatgrrlwtrEISGPNGP 203
|
170 180
....*....|....*....|....*....
gi 1768673239 216 IA---------------ALNPDDGNVLWK 229
Cdd:pfam13360 204 ILdgdllyvvsddgelyALDRATGAVVWK 232
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
456-528 |
2.28e-10 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 62.64 E-value: 2.28e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1768673239 456 GYGELQAINVDTGKKVWSHWSKLPWNGGVaTTAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQPSV 528
Cdd:TIGR03300 73 ADGTVAALDAETGKRLWRVDLDERLSGGV-GADGGLVFVGTEKGEVIALDAEDGKELWRA-KLSSEVLSPPLV 143
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
55-228 |
4.23e-10 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 61.58 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 55 YYRTYNGQAHSplkqidtANVKNLKQVWSYKFPADLQQGfeATPIVNGRYLFVTTPKDNVYAFDASTGKQLWkfEPKLGA 134
Cdd:cd10276 42 YAADANGQVSA-------FNATTGKIIWETSLSGKGFLG--GTPAVGNGKIFVGTESGYLYALDAKDGSELW--RTEVSD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 135 ESFKTAccdvinrgVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEPGVGYAFSLAPLALDGALVVGSAGGEygarg 214
Cdd:cd10276 111 SQLLSP--------PTYADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGNGT----- 177
|
170
....*....|....
gi 1768673239 215 fIAALNPDDGNVLW 228
Cdd:cd10276 178 -VVALNTGTGVDIW 190
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
96-230 |
2.94e-09 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 59.18 E-value: 2.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 96 ATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGAESFKTACcdvinrGVALYGKNVYVAMLSGDVVALDAQTGAL 175
Cdd:TIGR03300 139 SPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPPLTLRGSA------SPVIADGGVLVGFAGGKLVALDLQTGQP 212
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 176 AWRKQMFEP-GvgyAFSLAPLA-LDGALVVgsAGGEYGARGF---IAALNPDDGNVLWKR 230
Cdd:TIGR03300 213 LWEQRVALPkG---RTELERLVdVDGDPVV--DGGQVYAVSYqgrVAALDLRSGRVLWKR 267
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
458-537 |
7.19e-09 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 56.64 E-value: 7.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 458 GELQAINVDTGKKVWSHWSKLPWNGGVATtAGGLAFSGSLDGHLYAFDETTGKVLWQSPkLASGIVAQPSVfeVDGKEYV 537
Cdd:pfam13360 3 GVVTALDAATGAELWRVDLETGLGGGVAV-DGGRLFVATGGGQLVALDAATGKLLWRQT-LSGEVLGAPLV--AGGRVFV 78
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
77-291 |
9.32e-09 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 57.34 E-value: 9.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 77 NLKQVWSYKFPA-DLQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFepKLGAESFKTACCDVI--NRGVALYG 153
Cdd:cd10276 140 TGKVVWNRTSTApELSLRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEF--SVSEPRGRTELPRMIdsSVTYVVVG 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 154 KNVYVAMLSGDVVALDAQTGALAWRKQMfepGVGYAFslaPLALDGALVVGSAGGEygargfIAALNPDDGNVLWkRFTV 233
Cdd:cd10276 218 GYLYSTSYQGYLVALDFESGQFLWSRKA---SGGTST---STDANGRVYVGDGEGS------LYCLDASTGDELW-SQTV 284
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1768673239 234 PAAGEKggdtwpngmqehgGAPAWLTGTY----DAASKTLYWGVGNPGPWLADLRPGDNLYS 291
Cdd:cd10276 285 LLGRVL-------------SSPAIYVGVYiyvtDNAEGYLYCLKDNDGLTVARVEVDYSQYI 333
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
41-208 |
1.23e-08 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 57.25 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 41 ERLTAAQSDP---GWLTYYRTYNGQAHSplkqidtANVKNLKQVWSYKFPAdlqqgfEATPIVNGRYLFVTTPKDNVYAF 117
Cdd:TIGR03300 228 ERLVDVDGDPvvdGGQVYAVSYQGRVAA-------LDLRSGRVLWKRDASS------YQGPAVDDNRLYVTDADGVVVAL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 118 DASTGKQLWKFEpklgaesfktaccDVINR---GVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMfepgVGYAFSLAP 194
Cdd:TIGR03300 295 DRRSGSELWKND-------------ELKYRqltAPAVLGGYLVVGDFEGYLHWLDRDDGSFVARLKT----DGSGIASPP 357
|
170
....*....|....
gi 1768673239 195 LALDGALVVGSAGG 208
Cdd:TIGR03300 358 VVVGDGLLVQTRDG 371
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
65-519 |
3.37e-08 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 55.59 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 65 SPLKQIDtaNVKNLKQVWSYKFPADLQQGFEA-TPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKlgaesfktaccD 143
Cdd:COG1520 21 APLPEFE--PSVKVKQLWSASVGDGVGKGYSRlAPAVAGDRVYAADADGRVAALDAATGKELWRVDLG-----------E 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 144 VINRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMfepgVGYAFSlAPLALDGALVVgsaggeYGARGFIAALNPDD 223
Cdd:COG1520 88 PLSGGVGADGGLVVVGTEDGEVIALDADDGEELWRARL----SSEVLA-APAVAGGRVVV------RTGDGRVYALDAAT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 224 GNVLWkrftvpaagekggdtwpngMQEHGGAPAWLTGTYD--AASKTLYWGVGNPgpwladlrpgdnlysdSLLALDPKT 301
Cdd:COG1520 157 GERLW-------------------SYQRPVPALTLRGTSSpvIVGGAVLVGFANG----------------KLVALDLAN 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 302 GDLKWhyqytkhdtwdydgvNTPVlatikyedkeydaiihadrngffhAIDRGTGKL-----IYAKPFVTATSVtgYTad 376
Cdd:COG1520 202 GQPLW---------------EQRV------------------------AQPRGRTELerlvdVDGTPVVDGGVV--YA-- 238
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 377 gvpiqdaskypkagttietcpsflggknwwsVSYDpdkhiavvpalhacmslsgksvnymeglpylgegfeikpepgskg 456
Cdd:COG1520 239 -------------------------------VAYQ--------------------------------------------- 242
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1768673239 457 yGELQAINVDTGKKVWSHwsKLPWNGGVATTAGGLAFSGSlDGHLYAFDETTGKVLWQSPKLA 519
Cdd:COG1520 243 -GRLAALDLRSGRVLWSR--DLSSYTGLAVDGNNLYVTDD-DGRVWALDRRNGAELWKQDALL 301
|
|
| PQQ |
COG1520 |
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell ... |
98-212 |
1.93e-07 |
|
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441129 [Multi-domain] Cd Length: 370 Bit Score: 53.28 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 98 PIVNGRYLFVTTPKDNVYAFDASTGKQLWKfepklgAESFKtaccdviNRGV---ALYGKNVYVAMLSGDVVALDAQTGA 174
Cdd:COG1520 267 LAVDGNNLYVTDDDGRVWALDRRNGAELWK------QDALL-------YRGLtapVVLGDYVVVGDFEGYLHWLSRDDGS 333
|
90 100 110
....*....|....*....|....*....|....*...
gi 1768673239 175 LAWRKQMFepgvGYAFSLAPLALDGALVVGSAGGEYGA 212
Cdd:COG1520 334 LVARLRVD----GSGIRAAPVVVGDTLYVQTRDGTLAA 367
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
458-537 |
2.03e-07 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 53.10 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 458 GELQAINVDTGKKVWSH-WSKLPWNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQPSVFeVDGKEY 536
Cdd:cd10276 48 GQVSAFNATTGKIIWETsLSGKGFLGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRT-EVSDSQLLSPPTY-ADGKIY 125
|
.
gi 1768673239 537 V 537
Cdd:cd10276 126 V 126
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
147-238 |
8.60e-06 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 48.39 E-value: 8.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 147 RGVALYGKnVYVAMLSGDVVALDAQTGALAWRKQmFEPGVGYAFSLAPLALDGALVVGSA----GGEygaRGFIAALNPD 222
Cdd:PRK11138 64 HPAVAYNK-VYAADRAGLVKALDADTGKEIWSVD-LSEKDGWFSKNKSALLSGGVTVAGGkvyiGSE---KGQVYALNAE 138
|
90
....*....|....*.
gi 1768673239 223 DGNVLWKrftVPAAGE 238
Cdd:PRK11138 139 DGEVAWQ---TKVAGE 151
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
458-566 |
8.71e-06 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 48.00 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 458 GELQAINVDTGKKVWshwsKLPWNGGVAT---TAGGLAFSGSLDGHLYAFDETTGKVLW----QSPKL-----ASGIVAQ 525
Cdd:TIGR03300 115 GEVIALDAEDGKELW----RAKLSSEVLSpplVANGLVVVRTNDGRLTALDAATGERLWtysrVTPPLtlrgsASPVIAD 190
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1768673239 526 PSVFEV-DGKEYVAILAGYGgaNPIWGGPMAkaaekVPRGGT 566
Cdd:TIGR03300 191 GGVLVGfAGGKLVALDLQTG--QPLWEQRVA-----LPKGRT 225
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
457-528 |
1.69e-05 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 47.23 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 457 YGELQAINVDTGKKVWS--------HWSKLP---WNGGVaTTAGGLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQ 525
Cdd:PRK11138 78 AGLVKALDADTGKEIWSvdlsekdgWFSKNKsalLSGGV-TVAGGKVYIGSEKGQVYALNAEDGEVAWQT-KVAGEALSR 155
|
...
gi 1768673239 526 PSV 528
Cdd:PRK11138 156 PVV 158
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
456-542 |
2.13e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 46.24 E-value: 2.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 456 GYGELQAINVDTGKKVWshWSKLP-WNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSPKLASGI-VAQPSVFEVDG 533
Cdd:pfam13360 41 GGGQLVALDAATGKLLW--RQTLSgEVLGAPLVAGGRVFVVAGDGSLIALDAADGRRLWSYQRSGEPLaLRSSGSPAVVG 118
|
....*....
gi 1768673239 534 KEYVAILAG 542
Cdd:pfam13360 119 DTVVAGFSS 127
|
|
| BamB_YfgL |
cd10276 |
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is ... |
303-516 |
2.83e-05 |
|
Beta-barrel assembly machinery (Bam) complex component B and related proteins; BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.
Pssm-ID: 199834 [Multi-domain] Cd Length: 358 Bit Score: 46.56 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 303 DLKWHYQYTKHDTWDYDgvNTPVLATikyedkeyDAIIHADRNGFFHAIDRGTGKLIYAKPfvtaTSVTGYTAdGVPIQD 382
Cdd:cd10276 15 EVLWSKSVGNGGMAGID--LTPVVAG--------DMVYAADANGQVSAFNATTGKIIWETS----LSGKGFLG-GTPAVG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 383 ASKYpkagttietcpsFLGGKNWWSVSYDPDKHIAVVPAlhacmSLSGKSVN----YMEGLPYLGEGFeikpepgskgyG 458
Cdd:cd10276 80 NGKI------------FVGTESGYLYALDAKDGSELWRT-----EVSDSQLLspptYADGKIYVGTGD-----------G 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1768673239 459 ELQAINVDTGKKVWSHWSKLP----WNGGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSP 516
Cdd:cd10276 132 RLYYCNAETGKVVWNRTSTAPelslRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFS 193
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
74-178 |
3.96e-05 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 45.09 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 74 NVKNLKQVWSYKFPAD-------LQQGFEATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGaesfktaccdvin 146
Cdd:pfam13360 134 DPATGKVRWEAPLAAPrgtneleRLVDITGTPVVAGGRVFASAYQGRLVAFDAATGRRLWTREISGP------------- 200
|
90 100 110
....*....|....*....|....*....|..
gi 1768673239 147 RGVALYGKNVYVAMLSGDVVALDAQTGALAWR 178
Cdd:pfam13360 201 NGPILDGDLLYVVSDDGELYALDRATGAVVWK 232
|
|
| assembly_YfgL |
TIGR03300 |
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a ... |
146-543 |
3.97e-05 |
|
outer membrane assembly lipoprotein YfgL; Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274511 [Multi-domain] Cd Length: 377 Bit Score: 46.08 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 146 NRGVALYGKNVYVAMLSGDVVALDAQTGALAWRKQMFEP---GVGYAfslaplalDGALVVGSAGGEygargfIAALNPD 222
Cdd:TIGR03300 58 RLQPAVAGGKVYAADADGTVAALDAETGKRLWRVDLDERlsgGVGAD--------GGLVFVGTEKGE------VIALDAE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 223 DGNVLWKrftVPAAGEkggdtwpngmqehggapawltgtydAASKTLywgVGNPgpwLADLRPGDNlysdSLLALDPKTG 302
Cdd:TIGR03300 124 DGKELWR---AKLSSE-------------------------VLSPPL---VANG---LVVVRTNDG----RLTALDAATG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 303 DLKWHYQytkhdtwdydgVNTPVL-----ATIKYEDkeyDAIIHADRNGFFHAIDRGTGKLIYakpfvtatsvtgytadg 377
Cdd:TIGR03300 166 ERLWTYS-----------RVTPPLtlrgsASPVIAD---GGVLVGFAGGKLVALDLQTGQPLW----------------- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 378 vpiQDASKYPKAGTTIE------TCPSFLGGkNWWSVSYDpdkhiavvpalhacmslsgksvnymeglpylgegfeikpe 451
Cdd:TIGR03300 215 ---EQRVALPKGRTELErlvdvdGDPVVDGG-QVYAVSYQ---------------------------------------- 250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 452 pgskgyGELQAINVDTGKKVWSHwsKLPWNGGVATTAGGLaFSGSLDGHLYAFDETTGKVLWQSPKLASGIVAQPSVfeV 531
Cdd:TIGR03300 251 ------GRVAALDLRSGRVLWKR--DASSYQGPAVDDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--L 319
|
410
....*....|..
gi 1768673239 532 DGKEYVAILAGY 543
Cdd:TIGR03300 320 GGYLVVGDFEGY 331
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
490-526 |
1.91e-04 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 38.71 E-value: 1.91e-04
10 20 30
....*....|....*....|....*....|....*..
gi 1768673239 490 GLAFSGSLDGHLYAFDETTGKVLWQSpKLASGIVAQP 526
Cdd:pfam01011 1 GTVYLGSDDGYLYALDAETGKVLWSF-KTGGAVLSSP 36
|
|
| PQQ |
smart00564 |
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline ... |
485-516 |
6.48e-04 |
|
beta-propeller repeat; Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Pssm-ID: 128836 [Multi-domain] Cd Length: 33 Bit Score: 37.13 E-value: 6.48e-04
10 20 30
....*....|....*....|....*....|..
gi 1768673239 485 ATTAGGLAFSGSLDGHLYAFDETTGKVLWQSP 516
Cdd:smart00564 2 VVLSDGTVYVGSTDGTLYALDAKTGEILWTYK 33
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
96-230 |
8.29e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 41.84 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 96 ATPIVNGRYLFVTTPKDNVYAFDASTGKQLWKFEPKLGAESFktaccdvinRG----VALYGkNVYVAMLSGDVVALDAQ 171
Cdd:PRK11138 154 SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL---------RGesapATAFG-GAIVGGDNGRVSAVLME 223
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1768673239 172 TGALAWRKQMFEPGVGYAFS------LAPLALDGALVVGSAGGEygargfIAALNPDDGNVLWKR 230
Cdd:PRK11138 224 QGQLIWQQRISQPTGATEIDrlvdvdTTPVVVGGVVYALAYNGN------LVALDLRSGQIVWKR 282
|
|
| PRK11138 |
PRK11138 |
outer membrane biogenesis protein BamB; Provisional |
309-527 |
8.44e-04 |
|
outer membrane biogenesis protein BamB; Provisional
Pssm-ID: 236857 [Multi-domain] Cd Length: 394 Bit Score: 41.84 E-value: 8.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 309 QYTKHDTWDY---DGVN------TPVLAtikyedkeYDAIIHADRNGFFHAIDRGTGKLIYAKPFvtaTSVTGYTADGVP 379
Cdd:PRK11138 41 QFTPTTVWSTsvgDGVGdyysrlHPAVA--------YNKVYAADRAGLVKALDADTGKEIWSVDL---SEKDGWFSKNKS 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1768673239 380 IQDASKYPKAGTTIetcpsFLGGKNwwsvsydpdkhiAVVPALHACM-SLSGKSVNYMEGL--PYLGEGFEIKpepgSKG 456
Cdd:PRK11138 110 ALLSGGVTVAGGKV-----YIGSEK------------GQVYALNAEDgEVAWQTKVAGEALsrPVVSDGLVLV----HTS 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1768673239 457 YGELQAINVDTGKKVWSHWSKLP---WNG-GVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSPklasgiVAQPS 527
Cdd:PRK11138 169 NGMLQALNESDGAVKWTVNLDVPsltLRGeSAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR------ISQPT 237
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
458-516 |
1.44e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 40.46 E-value: 1.44e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1768673239 458 GELQAINVDTGKKVWSH-WSKLPWN---GGVATTAGGLAFSGSLDGHLYAFDETTGKVLWQSP 516
Cdd:pfam13360 83 GSLIALDAADGRRLWSYqRSGEPLAlrsSGSPAVVGDTVVAGFSSGKLVALDPATGKVRWEAP 145
|
|
| PQQ |
pfam01011 |
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller ... |
105-131 |
4.04e-03 |
|
PQQ enzyme repeat; The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group.
Pssm-ID: 395799 [Multi-domain] Cd Length: 36 Bit Score: 35.25 E-value: 4.04e-03
10 20
....*....|....*....|....*..
gi 1768673239 105 LFVTTPKDNVYAFDASTGKQLWKFEPK 131
Cdd:pfam01011 3 VYLGSDDGYLYALDAETGKVLWSFKTG 29
|
|
| |
