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Conserved domains on  [gi|1804918958|emb|VTS08946|]
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Uncharacterized protein OS=Blastopirellula marina DSM 3645 GN=DSM3645_25799 PE=4 SV=1 [Tuwongella immobilis]

Protein Classification

carboxypeptidase-like regulatory domain-containing protein( domain architecture ID 10613039)

carboxypeptidase-like regulatory domain-containing protein is an uncharacterized protein that may be lacking the TonB-dependent receptor plug domain and TonB-dependent receptor domain that are often found associated with the regulatory domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
50-109 6.19e-04

Carboxypeptidase regulatory-like domain;


:

Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 36.87  E-value: 6.19e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1804918958  50 VQGKVT-MDGEPLNQATIRFLPNTTSNGGMGVSKVDGTFSIagpqgqNGVPVGTYKVTVSR 109
Cdd:pfam13620   2 ISGTVTdPSGAPVPGATVTVTNTDTGTVRTTTTDADGRYRF------PGLPPGTYTVTVSA 56
 
Name Accession Description Interval E-value
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
50-109 6.19e-04

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 36.87  E-value: 6.19e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1804918958  50 VQGKVT-MDGEPLNQATIRFLPNTTSNGGMGVSKVDGTFSIagpqgqNGVPVGTYKVTVSR 109
Cdd:pfam13620   2 ISGTVTdPSGAPVPGATVTVTNTDTGTVRTTTTDADGRYRF------PGLPPGTYTVTVSA 56
 
Name Accession Description Interval E-value
CarboxypepD_reg pfam13620
Carboxypeptidase regulatory-like domain;
50-109 6.19e-04

Carboxypeptidase regulatory-like domain;


Pssm-ID: 433354 [Multi-domain]  Cd Length: 81  Bit Score: 36.87  E-value: 6.19e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1804918958  50 VQGKVT-MDGEPLNQATIRFLPNTTSNGGMGVSKVDGTFSIagpqgqNGVPVGTYKVTVSR 109
Cdd:pfam13620   2 ISGTVTdPSGAPVPGATVTVTNTDTGTVRTTTTDADGRYRF------PGLPPGTYTVTVSA 56
CarbopepD_reg_2 pfam13715
CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, ...
 50-108 4.89e-03

CarboxypepD_reg-like domain; This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.


Pssm-ID: 433425 [Multi-domain]  Cd Length: 88  Bit Score: 34.49  E-value: 4.89e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1804918958  50 VQGKVT--MDGEPLNQATIrFLPNTTsNGGmgVSKVDGTFSIagpqgqNGVPVGTYKVTVS 108
Cdd:pfam13715   1 ISGTVVdeNTGEPLPGATV-YVKGTT-KGT--VTDADGNFEL------KNLPAGTYTLVVS 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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