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Conserved domains on  [gi|1677287383|emb|VTN69248|]
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putative kinase [Klebsiella variicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
release_prfH super family cl46215
putative peptide chain release factor H; Members of this protein family are bacterial proteins ...
 1-120 3.16e-37

putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]


The actual alignment was detected with superfamily member NF040662:

Pssm-ID: 480555  Cd Length: 473  Bit Score: 133.94  E-value: 3.16e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677287383   1 MDVDTINVLESAYWTPRGEYFDFA-TGDSISALEMLQKIANAGKSRFLLSDGLATVNREGIKPWTG-VITPHEMV-EELQ 77
Cdd:NF040662  179 IDLDTLYALDDEVWTGRGDEFDYTfDDESVSFEEALQMIANAGRAEPYRDGGLLSFVRDEPRTVPGaLFNPRNIVpDSFK 258

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1677287383  78 SGFTVPSDDDFDGVDVTYINGTTWAEETVKCRTPDNPT--PVKIE 120
Cdd:NF040662  259 RSYTMPVEDDYDGVEVEYVDPDTWKKETVRCRLPGSAGrnPKKIE 303
 
Name Accession Description Interval E-value
attach_TipJ_rel NF040662
host specificity factor TipJ family phage tail protein; Members of this family form a family ...
 1-120 3.16e-37

host specificity factor TipJ family phage tail protein; Members of this family form a family related to that of host specificity protein J of phage lambda, a tail tip protein that mediates attachment to LamB on the surface of E. coli. Binding of the phage tail to the LamB receptor triggers the injection of phage DNA into host cells. Proteins with this domain are likely also to be phage tail proteins.


Pssm-ID: 468628  Cd Length: 473  Bit Score: 133.94  E-value: 3.16e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677287383   1 MDVDTINVLESAYWTPRGEYFDFA-TGDSISALEMLQKIANAGKSRFLLSDGLATVNREGIKPWTG-VITPHEMV-EELQ 77
Cdd:NF040662  179 IDLDTLYALDDEVWTGRGDEFDYTfDDESVSFEEALQMIANAGRAEPYRDGGLLSFVRDEPRTVPGaLFNPRNIVpDSFK 258

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1677287383  78 SGFTVPSDDDFDGVDVTYINGTTWAEETVKCRTPDNPT--PVKIE 120
Cdd:NF040662  259 RSYTMPVEDDYDGVEVEYVDPDTWKKETVRCRLPGSAGrnPKKIE 303
 
Name Accession Description Interval E-value
attach_TipJ_rel NF040662
host specificity factor TipJ family phage tail protein; Members of this family form a family ...
 1-120 3.16e-37

host specificity factor TipJ family phage tail protein; Members of this family form a family related to that of host specificity protein J of phage lambda, a tail tip protein that mediates attachment to LamB on the surface of E. coli. Binding of the phage tail to the LamB receptor triggers the injection of phage DNA into host cells. Proteins with this domain are likely also to be phage tail proteins.


Pssm-ID: 468628  Cd Length: 473  Bit Score: 133.94  E-value: 3.16e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1677287383   1 MDVDTINVLESAYWTPRGEYFDFA-TGDSISALEMLQKIANAGKSRFLLSDGLATVNREGIKPWTG-VITPHEMV-EELQ 77
Cdd:NF040662  179 IDLDTLYALDDEVWTGRGDEFDYTfDDESVSFEEALQMIANAGRAEPYRDGGLLSFVRDEPRTVPGaLFNPRNIVpDSFK 258

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1677287383  78 SGFTVPSDDDFDGVDVTYINGTTWAEETVKCRTPDNPT--PVKIE 120
Cdd:NF040662  259 RSYTMPVEDDYDGVEVEYVDPDTWKKETVRCRLPGSAGrnPKKIE 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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