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Conserved domains on  [gi|1572203430|emb|VEU37474|]
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unnamed protein product [Pseudo-nitzschia multistriata]

Protein Classification

HAT and Suf domain-containing protein( domain architecture ID 13909304)

HAT and Suf domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 85-117 6.36e-08

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


:

Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 49.08  E-value: 6.36e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1572203430   85 KEFERARSIYERALEVEPRSAELWLRYAQFEMR 117
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-583 1.11e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 339 REYNERVEKDPYDYDAWFEFAKLeedstlldagtdnHHRAGDPAAVREVYERAVAQVPpgntgekehwKRYIYLWIYYAT 418
Cdd:COG2956    63 RIHQKLLERDPDRAEALLELAQD-------------YLKAGLLDRAEELLEKLLELDP----------DDAEALRLLAEI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 419 YEELtnRDLERASEIYQTCLDHVIPHKQFsfskvWIYAAKLQIRRKNLTAARKLLGRAIGMCKGKERIFKEYIAIEMSLG 498
Cdd:COG2956   120 YEQE--GDWEKAIEVLERLLKLGPENAHA-----YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 499 EIDRCRTLYNNYLKAMPQNCEAWSKYAELEKSLGESERCRAILSLAISQ-PSLDMPEVLWksfiDFEIEEGEAGNARKLY 577
Cdd:COG2956   193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELdPSDDLLLALA----DLLERKEGLEAALALL 268


                  ....*.
gi 1572203430 578 ERLLEK 583
Cdd:COG2956   269 ERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 58-275 3.07e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 3.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  58 KHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPR 137
Cdd:COG2956    29 DLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 138 TDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDD-NAWMAYARFETRcggsSGGLDRAEAVMRRYVNAYP-SPKSFMKF 215
Cdd:COG2956   109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLE----QGDYDEAIEALEKALKLDPdCARALLLL 184

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 216 AKWAEyEAKNVDLARTIWEASLsELEPEeskQARVFARFAAFEERQGEYVRARVIYKHAI 275
Cdd:COG2956   185 AELYL-EQGDYEEAIAALERAL-EQDPD---YLPALPRLAELYEKLGDPEEALELLRKAL 239
 
Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 85-117 6.36e-08

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 49.08  E-value: 6.36e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1572203430   85 KEFERARSIYERALEVEPRSAELWLRYAQFEMR 117
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-583 1.11e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 339 REYNERVEKDPYDYDAWFEFAKLeedstlldagtdnHHRAGDPAAVREVYERAVAQVPpgntgekehwKRYIYLWIYYAT 418
Cdd:COG2956    63 RIHQKLLERDPDRAEALLELAQD-------------YLKAGLLDRAEELLEKLLELDP----------DDAEALRLLAEI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 419 YEELtnRDLERASEIYQTCLDHVIPHKQFsfskvWIYAAKLQIRRKNLTAARKLLGRAIGMCKGKERIFKEYIAIEMSLG 498
Cdd:COG2956   120 YEQE--GDWEKAIEVLERLLKLGPENAHA-----YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 499 EIDRCRTLYNNYLKAMPQNCEAWSKYAELEKSLGESERCRAILSLAISQ-PSLDMPEVLWksfiDFEIEEGEAGNARKLY 577
Cdd:COG2956   193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELdPSDDLLLALA----DLLERKEGLEAALALL 268


                  ....*.
gi 1572203430 578 ERLLEK 583
Cdd:COG2956   269 ERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 58-275 3.07e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 3.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  58 KHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPR 137
Cdd:COG2956    29 DLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 138 TDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDD-NAWMAYARFETRcggsSGGLDRAEAVMRRYVNAYP-SPKSFMKF 215
Cdd:COG2956   109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLE----QGDYDEAIEALEKALKLDPdCARALLLL 184

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 216 AKWAEyEAKNVDLARTIWEASLsELEPEeskQARVFARFAAFEERQGEYVRARVIYKHAI 275
Cdd:COG2956   185 AELYL-EQGDYEEAIAALERAL-EQDPD---YLPALPRLAELYEKLGDPEEALELLRKAL 239
Suf pfam05843
Suppressor of forked protein (Suf); This family consists of several eukaryotic suppressor of ...
 108-255 1.55e-04

Suppressor of forked protein (Suf); This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilization and an important role of the GU-rich sequence for this regulation to occur.


Pssm-ID: 428647 [Multi-domain]  Cd Length: 291  Bit Score: 44.29  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 108 WLRYAQFEMRNEFLNHARNVLDRAVQllpRTDFLWYKYV---YMEELVRDIPKC-RSVFERWMKWMPDDNAWM-AYARFE 182
Cdd:pfam05843   4 WIQYMRAMRRAEGIKGARKVFKKARK---RPRLTYHVYVasaLMEYYCSKDPAVaFKIFELGLKLFPEDEEFVlKYLDYL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1572203430 183 TRCGGSsgglDRAEAVMRRYVNAyPSPKSFMK--FAKWAEYEAKNVDLARTI-WEASLSELEPEESKQARVFARFA 255
Cdd:pfam05843  81 ISLNDD----NNARVLFERVLTR-LAQEKEAKplWKKFISYESTFGDLASILkLEKRMAELFPEDPPLALFVDRYS 151
TPR_14 pfam13428
Tetratricopeptide repeat;
74-114 4.45e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 38.56  E-value: 4.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1572203430  74 WVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQF 114
Cdd:pfam13428   4 LLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 86-148 7.34e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 7.34e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1572203430  86 EFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTDFLwyKYVYM 148
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE--KYLYL 75
 
Name Accession Description Interval E-value
HAT smart00386
HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and ...
 85-117 6.36e-08

HAT (Half-A-TPR) repeats; Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.


Pssm-ID: 214642 [Multi-domain]  Cd Length: 33  Bit Score: 49.08  E-value: 6.36e-08
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1572203430   85 KEFERARSIYERALEVEPRSAELWLRYAQFEMR 117
Cdd:smart00386   1 GDIERARKIYERALEKFPKSVELWLKYAEFEER 33
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 339-583 1.11e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 339 REYNERVEKDPYDYDAWFEFAKLeedstlldagtdnHHRAGDPAAVREVYERAVAQVPpgntgekehwKRYIYLWIYYAT 418
Cdd:COG2956    63 RIHQKLLERDPDRAEALLELAQD-------------YLKAGLLDRAEELLEKLLELDP----------DDAEALRLLAEI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 419 YEELtnRDLERASEIYQTCLDHVIPHKQFsfskvWIYAAKLQIRRKNLTAARKLLGRAIGMCKGKERIFKEYIAIEMSLG 498
Cdd:COG2956   120 YEQE--GDWEKAIEVLERLLKLGPENAHA-----YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 499 EIDRCRTLYNNYLKAMPQNCEAWSKYAELEKSLGESERCRAILSLAISQ-PSLDMPEVLWksfiDFEIEEGEAGNARKLY 577
Cdd:COG2956   193 DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELdPSDDLLLALA----DLLERKEGLEAALALL 268


                  ....*.
gi 1572203430 578 ERLLEK 583
Cdd:COG2956   269 ERQLRR 274
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 58-275 3.07e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.42  E-value: 3.07e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  58 KHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPR 137
Cdd:COG2956    29 DLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 138 TDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDD-NAWMAYARFETRcggsSGGLDRAEAVMRRYVNAYP-SPKSFMKF 215
Cdd:COG2956   109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENaHAYCELAELYLE----QGDYDEAIEALEKALKLDPdCARALLLL 184

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 216 AKWAEyEAKNVDLARTIWEASLsELEPEeskQARVFARFAAFEERQGEYVRARVIYKHAI 275
Cdd:COG2956   185 AELYL-EQGDYEEAIAALERAL-EQDPD---YLPALPRLAELYEKLGDPEEALELLRKAL 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 22-202 7.60e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.27  E-value: 7.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  22 EQLLRESADRQEVLK--VDPVVQIHDAEEYQSYLRDRRKHYEDNIRYRREhignwvkYAKLEEDHKEFERARSIYERALE 99
Cdd:COG2956   100 EKLLELDPDDAEALRllAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE-------LAELYLEQGDYDEAIEALEKALK 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 100 VEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDDNAWMAYA 179
Cdd:COG2956   173 LDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALA 252

                         170       180
                  ....*....|....*....|...
gi 1572203430 180 RFETRCGGSSGGLDRAEAVMRRY 202
Cdd:COG2956   253 DLLERKEGLEAALALLERQLRRH 275
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 60-180 1.43e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.08  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  60 YEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTD 139
Cdd:COG4235     6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNP 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1572203430 140 FLWYKYVYMEELVRDIPKCRSVFERWMKWMPDDNAWMAYAR 180
Cdd:COG4235    86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 58-209 1.22e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 1.22e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  58 KHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPR 137
Cdd:COG3914   133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1572203430 138 TDFLWYKYVYMEELVRDIPKcRSVFERWMKWMPDDNAWMAYARFEtrcggSSGGLDRAE--AVMRRYVNAYPSP 209
Cdd:COG3914   213 NADAHSNLLFALRQACDWEV-YDRFEELLAALARGPSELSPFALL-----YLPDDDPAEllALARAWAQLVAAA 280
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 57-172 1.63e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  57 RKHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLP 136
Cdd:COG4783    24 EALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1572203430 137 RTDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDD 172
Cdd:COG4783   104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 22-239 7.09e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 7.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  22 EQLLRESADRQEVLkvdpvVQIhdAEEYQSYLRDRR--KHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALE 99
Cdd:COG2956    66 QKLLERDPDRAEAL-----LEL--AQDYLKAGLLDRaeELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 100 VEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDDNAWMAYA 179
Cdd:COG2956   139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 180 RfetRCGGSSGGLDRAEAVMRRYVNAYPSPKSFMKFAKWAEyEAKNVDLARTIWEASLSE 239
Cdd:COG2956   219 A---ELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE-RKEGLEAALALLERQLRR 274
Suf pfam05843
Suppressor of forked protein (Suf); This family consists of several eukaryotic suppressor of ...
 108-255 1.55e-04

Suppressor of forked protein (Suf); This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilization and an important role of the GU-rich sequence for this regulation to occur.


Pssm-ID: 428647 [Multi-domain]  Cd Length: 291  Bit Score: 44.29  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 108 WLRYAQFEMRNEFLNHARNVLDRAVQllpRTDFLWYKYV---YMEELVRDIPKC-RSVFERWMKWMPDDNAWM-AYARFE 182
Cdd:pfam05843   4 WIQYMRAMRRAEGIKGARKVFKKARK---RPRLTYHVYVasaLMEYYCSKDPAVaFKIFELGLKLFPEDEEFVlKYLDYL 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1572203430 183 TRCGGSsgglDRAEAVMRRYVNAyPSPKSFMK--FAKWAEYEAKNVDLARTI-WEASLSELEPEESKQARVFARFA 255
Cdd:pfam05843  81 ISLNDD----NNARVLFERVLTR-LAQEKEAKplWKKFISYESTFGDLASILkLEKRMAELFPEDPPLALFVDRYS 151
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 74-207 1.76e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  74 WVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTDFLWYKYVYMEELVR 153
Cdd:COG4783     7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1572203430 154 DIPKCRSVFERWMKWMPDD-NAWMAYARFETRcggsSGGLDRAEAVMRRYVNAYP 207
Cdd:COG4783    87 DYDEALALLEKALKLDPEHpEAYLRLARAYRA----LGRPDEAIAALEKALELDP 137
TPR_14 pfam13428
Tetratricopeptide repeat;
74-114 4.45e-04

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 38.56  E-value: 4.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1572203430  74 WVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQF 114
Cdd:pfam13428   4 LLALARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
COG5191 COG5191
Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function ...
 74-149 5.65e-04

Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only];


Pssm-ID: 227518 [Multi-domain]  Cd Length: 435  Bit Score: 43.03  E-value: 5.65e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1572203430  74 WVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMR-NEFLNHARNVLDRAVQLLPRTDFLWYKYVYME 149
Cdd:COG5191   110 WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFeIANIESSRAMFLKGLRMNSRSPRIWIEYFRME 186
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 86-148 7.34e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 42.23  E-value: 7.34e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1572203430  86 EFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLPRTDFLwyKYVYM 148
Cdd:cd24142    15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE--KYLYL 75
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
57-137 1.15e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  57 RKHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSiYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLP 136
Cdd:COG3063    12 EEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90


                  .
gi 1572203430 137 R 137
Cdd:COG3063    91 S 91
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 57-235 2.37e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.13  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430  57 RKHYEDNIRYRREHIGNWVKYAKLEEDHKEFERARSIYERALEVEPRSAELWLRYAQFEMRNEFLNHARNVLDRAVQLLP 136
Cdd:COG3914    98 LALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDP 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1572203430 137 RTDFLWYKYVYMEELVRDIPKCRSVFERWMKWMPDDNAWMAYARFETRCGGSSGGLDRAEAVMRRYVNAYPSPKSFMKFA 216
Cdd:COG3914   178 DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257

                         170
                  ....*....|....*....
gi 1572203430 217 KWAEYEAKNVDLARTIWEA 235
Cdd:COG3914   258 LPDDDPAELLALARAWAQL 276
HAT pfam02184
HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing ...
 85-117 7.87e-03

HAT (Half-A-TPR) repeat; The HAT (Half A TPR) repeat is found in several RNA processing proteins.


Pssm-ID: 111114 [Multi-domain]  Cd Length: 32  Bit Score: 34.46  E-value: 7.87e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1572203430  85 KEFERARSIYERALEVEPrSAELWLRYAQFEMR 117
Cdd:pfam02184   1 KEIDRARGIYERFVHVHP-EVQNWIKWARFEEE 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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