|
Name |
Accession |
Description |
Interval |
E-value |
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
66-214 |
6.42e-10 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 59.07 E-value: 6.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 66 ARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQI 145
Cdd:NF041483 878 VRTEASDTLASAEQDAARTRADAREDANRIRSDAAAQADRLIGEATSEAERLTAEARAEAERLRDEARAEAERVRADAAA 957
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 146 DADRAIQAGKDSYER-------SVADGKAEQARLVAQTEVVRA-AHAESARLIDTAQAEADRVRAECDDYVDERMAD 214
Cdd:NF041483 958 QAEQLIAEATGEAERlraeaaeTVGSAQQHAERIRTEAERVKAeAAAEAERLRTEAREEADRTLDEARKDANKRRSE 1034
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
65-209 |
8.28e-08 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 52.91 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 65 DARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQ 144
Cdd:NF041483 899 DAREDANRIRSDAAAQADRLIGEATSEAERLTAEARAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLRAEAA 978
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1539972958 145 IDADRAIQAG---KDSYERSVADGKAEQARLVAQtevvraAHAESARLIDTAQAEADRVRAECDDYVD 209
Cdd:NF041483 979 ETVGSAQQHAeriRTEAERVKAEAAAEAERLRTE------AREEADRTLDEARKDANKRRSEAAEQAD 1040
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
80-203 |
1.22e-07 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 51.80 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 80 QARTTIENARAEADRILSDAKAHADR-----MVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADRAIQAG 154
Cdd:COG2268 207 EAERETEIAIAQANREAEEAELEQEReietaRIAEAEAELAKKKAEERREAETARAEAEAAYEIAEANAEREVQRQLEIA 286
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1539972958 155 KDSYERSVADGKAEQARLVAQTEVVRAAHAESARLIDTAQAEADRVRAE 203
Cdd:COG2268 287 EREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAK 335
|
|
| SPFH_HflK |
cd03404 |
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and ... |
74-126 |
2.25e-07 |
|
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.
Pssm-ID: 259802 [Multi-domain] Cd Length: 266 Bit Score: 50.59 E-value: 2.25e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1539972958 74 VNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAE 126
Cdd:cd03404 179 VNAARQDKERLINEAQAYANEVIPRARGEAARIIQEAEAYKAEVVARAEGDAA 231
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-239 |
2.76e-06 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 48.28 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQAR-------TTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADG 132
Cdd:NF041483 854 ERTVSEAIAEAERLRSDASEYAQrvrteasDTLASAEQDAARTRADAREDANRIRSDAAAQADRLIGEATSEAERLTAEA 933
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 133 NAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQ-TEVVRAAHAESARLidtaQAEADRVRAECDDYVDER 211
Cdd:NF041483 934 RAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLRAEaAETVGSAQQHAERI----RTEAERVKAEAAAEAERL 1009
|
170 180
....*....|....*....|....*...
gi 1539972958 212 MADfggRLAEMEETLSTTRRSISRGRAQ 239
Cdd:NF041483 1010 RTE---AREEADRTLDEARKDANKRRSE 1034
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-148 |
8.85e-06 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 46.74 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDEL 139
Cdd:NF041483 1018 DRTLDEARKDANKRRSEAAEQADTLITEAAAEADQLTAKAQEEALRTTTEAEAQADTMVGAARKEAERIVAEATVEGNSL 1097
|
....*....
gi 1539972958 140 TGRAQIDAD 148
Cdd:NF041483 1098 VEKARTDAD 1106
|
|
| PRK01005 |
PRK01005 |
V-type ATP synthase subunit E; Provisional |
84-134 |
3.77e-05 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 179204 [Multi-domain] Cd Length: 207 Bit Score: 43.62 E-value: 3.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1539972958 84 TIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNA 134
Cdd:PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
52-210 |
6.95e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 44.05 E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 52 AQDVLDHRDKIVGDARTGAETTVNSANEQARTTiENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIAD 131
Cdd:NF041483 231 AQEATDHAEQLRSSTAAESDQARRQAAELSRAA-EQRMQEAEEALREARAEAEKVVAEAKEAAAKQLASAESANEQRTRT 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 132 GNAEYDELTGRAQIDAdraiQAGKDSYERSVADGKAEQARLVAQT----------------------------------- 176
Cdd:NF041483 310 AKEEIARLVGEATKEA----EALKAEAEQALADARAEAEKLVAEAaekartvaaedtaaqlakaartaeevltkasedak 385
|
170 180 190
....*....|....*....|....*....|....
gi 1539972958 177 EVVRAAHAESARLIDTAQAEADRVRAECDDYVDE 210
Cdd:NF041483 386 ATTRAAAEEAERIRREAEAEADRLRGEAADQAEQ 419
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-203 |
9.85e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLvataQSEAEQVIADGNAEYDELTGRAQID 146
Cdd:NF041483 508 RTEAIERATTLRRQAEETLERTRAEAERLRAEAEEQAEEVRAAAERAAREL----REETERAIAARQAEAAEELTRLHTE 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1539972958 147 ADRAIQAGkdsyERSVADGKAEQARL----VAQTEVVRAAHAESARLIDT-AQAEADRVRAE 203
Cdd:NF041483 584 AEERLTAA----EEALADARAEAERIrreaAEETERLRTEAAERIRTLQAqAEQEAERLRTE 641
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-188 |
1.05e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQArttiENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSE--------AEQV---IADGNAE 135
Cdd:NF041483 974 RAEAAETVGSAQQHA----ERIRTEAERVKAEAAAEAERLRTEAREEADRTLDEARKDankrrseaAEQAdtlITEAAAE 1049
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1539972958 136 YDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVVRAAHAESAR 188
Cdd:NF041483 1050 ADQLTAKAQEEALRTTTEAEAQADTMVGAARKEAERIVAEATVEGNSLVEKAR 1102
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-224 |
1.11e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMV-------AEATAHADRLVATAQSEAEQVIADG 132
Cdd:NF041483 177 EQALAAARAEAERLAEEARQRLGSEAESARAEAEAILRRARKDAERLLnaastqaQEATDHAEQLRSSTAAESDQARRQA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 133 nAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVV-----RAAHAESARLIDTAQAEADRVRAECDDY 207
Cdd:NF041483 257 -AELSRAAEQRMQEAEEALREARAEAEKVVAEAKEAAAKQLASAESAneqrtRTAKEEIARLVGEATKEAEALKAEAEQA 335
|
170
....*....|....*..
gi 1539972958 208 VDERMADFGGRLAEMEE 224
Cdd:NF041483 336 LADARAEAEKLVAEAAE 352
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
13-175 |
1.17e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.28 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 13 AIVEEARGIPPTRSCIVPRGDVLEllDDVRDALP-----------GELDDAQDVLDHRDKIVGDARTGAETTVNSANEQA 81
Cdd:NF012221 1610 AILEESRAVTKELTTLAQGLDALD--SQATYAGEsgdqwrnpfagGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKV 1687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 82 RTTI----------ENARAEADRILSDAKAHADRMVAEATAHadrlvataQSEAEQVIADGNAEYDELTGRAQIDAdrai 151
Cdd:NF012221 1688 KDAVakseagvaqgEQNQANAEQDIDDAKADAEKRKDDALAK--------QNEAQQAESDANAAANDAQSRGEQDA---- 1755
|
170 180
....*....|....*....|....
gi 1539972958 152 qagkdsyerSVADGKAEQARLVAQ 175
Cdd:NF012221 1756 ---------SAAENKANQAQADAK 1770
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
66-241 |
4.72e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 41.35 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 66 ARTgAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQS---------------------E 124
Cdd:NF041483 370 ART-AEEVLTKASEDAKATTRAAAEEAERIRREAEAEADRLRGEAADQAEQLKGAAKDdtkeyraktvelqeearrlrgE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 125 AEQVIADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEqarlvaQTEVVRAAHAESARLIDTAQAEADRVRAEC 204
Cdd:NF041483 449 AEQLRAEAVAEGERIRGEARREAVQQIEEAARTAEELLTKAKAD------ADELRSTATAESERVRTEAIERATTLRRQA 522
|
170 180 190
....*....|....*....|....*....|....*..
gi 1539972958 205 DDYVDERMADFGGRLAEMEETLSTTRRSISRGRAQMR 241
Cdd:NF041483 523 EETLERTRAEAERLRAEAEEQAEEVRAAAERAARELR 559
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
82-241 |
5.16e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 41.35 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 82 RTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADRAIQAGKDSYERS 161
Cdd:NF041483 581 HTEAEERLTAAEEALADARAEAERIRREAAEETERLRTEAAERIRTLQAQAEQEAERLRTEAAADASAARAEGENVAVRL 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 162 VADGKAEQARLVAQtevvraAHAESARLIDTAQAEADRVRAECDDYVDERMADFGGRLAEMEETLSTTRRSISRGRAQMR 241
Cdd:NF041483 661 RSEAAAEAERLKSE------AQESADRVRAEAAAAAERVGTEAAEALAAAQEEAARRRREAEETLGSARAEADQERERAR 734
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
54-203 |
7.77e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 54 DVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRI-------LSDAKAHADRMVAEatahADRLVATAQSEAE 126
Cdd:NF041483 932 EARAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLraeaaetVGSAQQHAERIRTE----AERVKAEAAAEAE 1007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 127 QVIADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLV--AQTEVVRA---AHAESARLIDTAQAEADRVR 201
Cdd:NF041483 1008 RLRTEAREEADRTLDEARKDANKRRSEAAEQADTLITEAAAEADQLTakAQEEALRTtteAEAQADTMVGAARKEAERIV 1087
|
..
gi 1539972958 202 AE 203
Cdd:NF041483 1088 AE 1089
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
70-213 |
8.89e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 70 AETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADR 149
Cdd:NF041483 154 AEQLRARTESQARRLLDESRAEAEQALAAARAEAERLAEEARQRLGSEAESARAEAEAILRRARKDAERLLNAASTQAQE 233
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 150 AiqAGKDSYERSVADGKAEQARLVAqTEVVRAAH---AESARLIDTAQAEADRVRAECDDYVDERMA 213
Cdd:NF041483 234 A--TDHAEQLRSSTAAESDQARRQA-AELSRAAEqrmQEAEEALREARAEAEKVVAEAKEAAAKQLA 297
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-221 |
1.02e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.19 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQID 146
Cdd:NF041483 588 LTAAEEALADARAEAERIRREAAEETERLRTEAAERIRTLQAQAEQEAERLRTEAAADASAARAEGENVAVRLRSEAAAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 147 ADRAIQAGKDSYERSVADGKAEQARLVAQ-TEVVRAAHAESAR-------LIDTAQAEADRVRAECDDYVDERMADFGGR 218
Cdd:NF041483 668 AERLKSEAQESADRVRAEAAAAAERVGTEaAEALAAAQEEAARrrreaeeTLGSARAEADQERERAREQSEELLASARKR 747
|
...
gi 1539972958 219 LAE 221
Cdd:NF041483 748 VEE 750
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
54-203 |
1.44e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.81 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 54 DVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGN 133
Cdd:NF041483 455 EAVAEGERIRGEARREAVQQIEEAARTAEELLTKAKADADELRSTATAESERVRTEAIERATTLRRQAEETLERTRAEAE 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 134 ---AEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQA------------RLVAQTEVVRAAHAESARLIDTAQAEAD 198
Cdd:NF041483 535 rlrAEAEEQAEEVRAAAERAARELREETERAIAARQAEAAeeltrlhteaeeRLTAAEEALADARAEAERIRREAAEETE 614
|
....*
gi 1539972958 199 RVRAE 203
Cdd:NF041483 615 RLRTE 619
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
48-230 |
2.15e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.42 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 48 ELDDAQDVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQ 127
Cdd:NF041483 700 ALAAAQEEAARRRREAEETLGSARAEADQERERAREQSEELLASARKRVEEAQAEAQRLVEEADRRATELVSAAEQTAQQ 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 128 V-------IADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVVR--------AAHAESARLIDT 192
Cdd:NF041483 780 VrdsvaglQEQAEEEIAGLRSAAEHAAERTRTEAQEEADRVRSDAYAERERASEDANRLRreaqeeteAAKALAERTVSE 859
|
170 180 190
....*....|....*....|....*....|....*...
gi 1539972958 193 AQAEADRVRAECDDYVDERMADFGGRLAEMEETLSTTR 230
Cdd:NF041483 860 AIAEAERLRSDASEYAQRVRTEASDTLASAEQDAARTR 897
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
66-214 |
6.42e-10 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 59.07 E-value: 6.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 66 ARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQI 145
Cdd:NF041483 878 VRTEASDTLASAEQDAARTRADAREDANRIRSDAAAQADRLIGEATSEAERLTAEARAEAERLRDEARAEAERVRADAAA 957
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 146 DADRAIQAGKDSYER-------SVADGKAEQARLVAQTEVVRA-AHAESARLIDTAQAEADRVRAECDDYVDERMAD 214
Cdd:NF041483 958 QAEQLIAEATGEAERlraeaaeTVGSAQQHAERIRTEAERVKAeAAAEAERLRTEAREEADRTLDEARKDANKRRSE 1034
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
65-209 |
8.28e-08 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 52.91 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 65 DARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQ 144
Cdd:NF041483 899 DAREDANRIRSDAAAQADRLIGEATSEAERLTAEARAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLRAEAA 978
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1539972958 145 IDADRAIQAG---KDSYERSVADGKAEQARLVAQtevvraAHAESARLIDTAQAEADRVRAECDDYVD 209
Cdd:NF041483 979 ETVGSAQQHAeriRTEAERVKAEAAAEAERLRTE------AREEADRTLDEARKDANKRRSEAAEQAD 1040
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
80-203 |
1.22e-07 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 51.80 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 80 QARTTIENARAEADRILSDAKAHADR-----MVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADRAIQAG 154
Cdd:COG2268 207 EAERETEIAIAQANREAEEAELEQEReietaRIAEAEAELAKKKAEERREAETARAEAEAAYEIAEANAEREVQRQLEIA 286
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1539972958 155 KDSYERSVADGKAEQARLVAQTEVVRAAHAESARLIDTAQAEADRVRAE 203
Cdd:COG2268 287 EREREIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAK 335
|
|
| SPFH_HflK |
cd03404 |
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and ... |
74-126 |
2.25e-07 |
|
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.
Pssm-ID: 259802 [Multi-domain] Cd Length: 266 Bit Score: 50.59 E-value: 2.25e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1539972958 74 VNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAE 126
Cdd:cd03404 179 VNAARQDKERLINEAQAYANEVIPRARGEAARIIQEAEAYKAEVVARAEGDAA 231
|
|
| SPFH_HflK |
cd03404 |
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and ... |
63-119 |
1.84e-06 |
|
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.
Pssm-ID: 259802 [Multi-domain] Cd Length: 266 Bit Score: 47.89 E-value: 1.84e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 63 VGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVA 119
Cdd:cd03404 179 VNAARQDKERLINEAQAYANEVIPRARGEAARIIQEAEAYKAEVVARAEGDAARFLA 235
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-239 |
2.76e-06 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 48.28 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQAR-------TTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADG 132
Cdd:NF041483 854 ERTVSEAIAEAERLRSDASEYAQrvrteasDTLASAEQDAARTRADAREDANRIRSDAAAQADRLIGEATSEAERLTAEA 933
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 133 NAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQ-TEVVRAAHAESARLidtaQAEADRVRAECDDYVDER 211
Cdd:NF041483 934 RAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLRAEaAETVGSAQQHAERI----RTEAERVKAEAAAEAERL 1009
|
170 180
....*....|....*....|....*...
gi 1539972958 212 MADfggRLAEMEETLSTTRRSISRGRAQ 239
Cdd:NF041483 1010 RTE---AREEADRTLDEARKDANKRRSE 1034
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-148 |
8.85e-06 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 46.74 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDEL 139
Cdd:NF041483 1018 DRTLDEARKDANKRRSEAAEQADTLITEAAAEADQLTAKAQEEALRTTTEAEAQADTMVGAARKEAERIVAEATVEGNSL 1097
|
....*....
gi 1539972958 140 TGRAQIDAD 148
Cdd:NF041483 1098 VEKARTDAD 1106
|
|
| DivIVA |
COG3599 |
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ... |
48-127 |
2.79e-05 |
|
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442818 [Multi-domain] Cd Length: 125 Bit Score: 42.53 E-value: 2.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 48 ELDDAQDVLDHRDKIVGDARTGAET---TVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSE 124
Cdd:COG3599 42 ENKELKEKLEELEEELEEYRELEETlqkTLVVAQETAEEVKENAEKEAELIIKEAELEAEKIIEEAQEKARKIVREIEEL 121
|
...
gi 1539972958 125 AEQ 127
Cdd:COG3599 122 KRQ 124
|
|
| PRK01005 |
PRK01005 |
V-type ATP synthase subunit E; Provisional |
84-134 |
3.77e-05 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 179204 [Multi-domain] Cd Length: 207 Bit Score: 43.62 E-value: 3.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1539972958 84 TIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNA 134
Cdd:PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGES 71
|
|
| NtpH |
COG2811 |
Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal ... |
61-162 |
6.19e-05 |
|
Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]; Archaeal/vacuolar-type H+-ATPase subunit H is part of the Pathway/BioSystem: A/V-type ATP synthase
Pssm-ID: 442060 [Multi-domain] Cd Length: 108 Bit Score: 41.05 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 61 KIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADrlvATAQSEAEQVIADGNAEYDELT 140
Cdd:COG2811 8 KEIKEAEEEADEIIEEAKEEREERIAEAREEAEEIIEQAEEEAEEEAQERLEEAR---EEAEAEAEEIIEEGEKEAEALK 84
|
90 100
....*....|....*....|..
gi 1539972958 141 GRAQIDADRAIQAGKDSYERSV 162
Cdd:COG2811 85 KKAEDKLDKAVELLVEEFEEAV 106
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
52-210 |
6.95e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 44.05 E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 52 AQDVLDHRDKIVGDARTGAETTVNSANEQARTTiENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIAD 131
Cdd:NF041483 231 AQEATDHAEQLRSSTAAESDQARRQAAELSRAA-EQRMQEAEEALREARAEAEKVVAEAKEAAAKQLASAESANEQRTRT 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 132 GNAEYDELTGRAQIDAdraiQAGKDSYERSVADGKAEQARLVAQT----------------------------------- 176
Cdd:NF041483 310 AKEEIARLVGEATKEA----EALKAEAEQALADARAEAEKLVAEAaekartvaaedtaaqlakaartaeevltkasedak 385
|
170 180 190
....*....|....*....|....*....|....
gi 1539972958 177 EVVRAAHAESARLIDTAQAEADRVRAECDDYVDE 210
Cdd:NF041483 386 ATTRAAAEEAERIRREAEAEADRLRGEAADQAEQ 419
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-203 |
9.85e-05 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 9.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLvataQSEAEQVIADGNAEYDELTGRAQID 146
Cdd:NF041483 508 RTEAIERATTLRRQAEETLERTRAEAERLRAEAEEQAEEVRAAAERAAREL----REETERAIAARQAEAAEELTRLHTE 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1539972958 147 ADRAIQAGkdsyERSVADGKAEQARL----VAQTEVVRAAHAESARLIDT-AQAEADRVRAE 203
Cdd:NF041483 584 AEERLTAA----EEALADARAEAERIrreaAEETERLRTEAAERIRTLQAqAEQEAERLRTE 641
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-188 |
1.05e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQArttiENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSE--------AEQV---IADGNAE 135
Cdd:NF041483 974 RAEAAETVGSAQQHA----ERIRTEAERVKAEAAAEAERLRTEAREEADRTLDEARKDankrrseaAEQAdtlITEAAAE 1049
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1539972958 136 YDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVVRAAHAESAR 188
Cdd:NF041483 1050 ADQLTAKAQEEALRTTTEAEAQADTMVGAARKEAERIVAEATVEGNSLVEKAR 1102
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
60-224 |
1.11e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 43.28 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMV-------AEATAHADRLVATAQSEAEQVIADG 132
Cdd:NF041483 177 EQALAAARAEAERLAEEARQRLGSEAESARAEAEAILRRARKDAERLLnaastqaQEATDHAEQLRSSTAAESDQARRQA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 133 nAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVV-----RAAHAESARLIDTAQAEADRVRAECDDY 207
Cdd:NF041483 257 -AELSRAAEQRMQEAEEALREARAEAEKVVAEAKEAAAKQLASAESAneqrtRTAKEEIARLVGEATKEAEALKAEAEQA 335
|
170
....*....|....*..
gi 1539972958 208 VDERMADFGGRLAEMEE 224
Cdd:NF041483 336 LADARAEAEKLVAEAAE 352
|
|
| PRK05759 |
PRK05759 |
F0F1 ATP synthase subunit B; Validated |
77-127 |
1.11e-04 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 180240 [Multi-domain] Cd Length: 156 Bit Score: 41.30 E-value: 1.11e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1539972958 77 ANEQARTTIENARAEADRILSDAKAHA----DRMVAEATAHADRLVATAQSEAEQ 127
Cdd:PRK05759 57 AQAKYEAQLAEARAEAAEIIEQAKKRAaqiiEEAKAEAEAEAARIKAQAQAEIEQ 111
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
13-175 |
1.17e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.28 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 13 AIVEEARGIPPTRSCIVPRGDVLEllDDVRDALP-----------GELDDAQDVLDHRDKIVGDARTGAETTVNSANEQA 81
Cdd:NF012221 1610 AILEESRAVTKELTTLAQGLDALD--SQATYAGEsgdqwrnpfagGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKV 1687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 82 RTTI----------ENARAEADRILSDAKAHADRMVAEATAHadrlvataQSEAEQVIADGNAEYDELTGRAQIDAdrai 151
Cdd:NF012221 1688 KDAVakseagvaqgEQNQANAEQDIDDAKADAEKRKDDALAK--------QNEAQQAESDANAAANDAQSRGEQDA---- 1755
|
170 180
....*....|....*....|....
gi 1539972958 152 qagkdsyerSVADGKAEQARLVAQ 175
Cdd:NF012221 1756 ---------SAAENKANQAQADAK 1770
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
77-127 |
1.33e-04 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 40.88 E-value: 1.33e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1539972958 77 ANEQARTTIENARAEADRILSDAKAHADRM----VAEATAHADRLVATAQSEAEQ 127
Cdd:cd06503 52 LLAEYEEKLAEARAEAQEIIEEARKEAEKIkeeiLAEAKEEAERILEQAKAEIEQ 106
|
|
| ATP-synt_Fo_b |
cd06503 |
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex ... |
79-164 |
1.39e-04 |
|
F-type ATP synthase, membrane subunit b; Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.
Pssm-ID: 349951 [Multi-domain] Cd Length: 132 Bit Score: 40.50 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 79 EQARTTIENARAEADRILSDAKAHADRMVAEATahadrlvATAQSEAEQVIADGNAEYDELTGRAQIDADRAIQAGKDSY 158
Cdd:cd06503 43 EKAKEEAEELLAEYEEKLAEARAEAQEIIEEAR-------KEAEKIKEEILAEAKEEAERILEQAKAEIEQEKEKALAEL 115
|
....*.
gi 1539972958 159 ERSVAD 164
Cdd:cd06503 116 RKEVAD 121
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
66-241 |
4.72e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 41.35 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 66 ARTgAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQS---------------------E 124
Cdd:NF041483 370 ART-AEEVLTKASEDAKATTRAAAEEAERIRREAEAEADRLRGEAADQAEQLKGAAKDdtkeyraktvelqeearrlrgE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 125 AEQVIADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEqarlvaQTEVVRAAHAESARLIDTAQAEADRVRAEC 204
Cdd:NF041483 449 AEQLRAEAVAEGERIRGEARREAVQQIEEAARTAEELLTKAKAD------ADELRSTATAESERVRTEAIERATTLRRQA 522
|
170 180 190
....*....|....*....|....*....|....*..
gi 1539972958 205 DDYVDERMADFGGRLAEMEETLSTTRRSISRGRAQMR 241
Cdd:NF041483 523 EETLERTRAEAERLRAEAEEQAEEVRAAAERAARELR 559
|
|
| PRK14471 |
PRK14471 |
F0F1 ATP synthase subunit B; Provisional |
76-172 |
4.81e-04 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 184695 [Multi-domain] Cd Length: 164 Bit Score: 39.77 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 76 SANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEqviadgnAEYDELTGRAQidadRAIQAGK 155
Cdd:PRK14471 49 ASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADAKEEAQ-------VEGDKMIEQAK----ASIESEK 117
|
90
....*....|....*..
gi 1539972958 156 DSyerSVADGKAEQARL 172
Cdd:PRK14471 118 NA---AMAEIKNQVANL 131
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
82-241 |
5.16e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 41.35 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 82 RTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADRAIQAGKDSYERS 161
Cdd:NF041483 581 HTEAEERLTAAEEALADARAEAERIRREAAEETERLRTEAAERIRTLQAQAEQEAERLRTEAAADASAARAEGENVAVRL 660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 162 VADGKAEQARLVAQtevvraAHAESARLIDTAQAEADRVRAECDDYVDERMADFGGRLAEMEETLSTTRRSISRGRAQMR 241
Cdd:NF041483 661 RSEAAAEAERLKSE------AQESADRVRAEAAAAAERVGTEAAEALAAAQEEAARRRREAEETLGSARAEADQERERAR 734
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
54-203 |
7.77e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 54 DVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRI-------LSDAKAHADRMVAEatahADRLVATAQSEAE 126
Cdd:NF041483 932 EARAEAERLRDEARAEAERVRADAAAQAEQLIAEATGEAERLraeaaetVGSAQQHAERIRTE----AERVKAEAAAEAE 1007
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 127 QVIADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLV--AQTEVVRA---AHAESARLIDTAQAEADRVR 201
Cdd:NF041483 1008 RLRTEAREEADRTLDEARKDANKRRSEAAEQADTLITEAAAEADQLTakAQEEALRTtteAEAQADTMVGAARKEAERIV 1087
|
..
gi 1539972958 202 AE 203
Cdd:NF041483 1088 AE 1089
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
70-213 |
8.89e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 70 AETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADR 149
Cdd:NF041483 154 AEQLRARTESQARRLLDESRAEAEQALAAARAEAERLAEEARQRLGSEAESARAEAEAILRRARKDAERLLNAASTQAQE 233
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 150 AiqAGKDSYERSVADGKAEQARLVAqTEVVRAAH---AESARLIDTAQAEADRVRAECDDYVDERMA 213
Cdd:NF041483 234 A--TDHAEQLRSSTAAESDQARRQA-AELSRAAEqrmQEAEEALREARAEAEKVVAEAKEAAAKQLA 297
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
67-221 |
1.02e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.19 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 67 RTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQID 146
Cdd:NF041483 588 LTAAEEALADARAEAERIRREAAEETERLRTEAAERIRTLQAQAEQEAERLRTEAAADASAARAEGENVAVRLRSEAAAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 147 ADRAIQAGKDSYERSVADGKAEQARLVAQ-TEVVRAAHAESAR-------LIDTAQAEADRVRAECDDYVDERMADFGGR 218
Cdd:NF041483 668 AERLKSEAQESADRVRAEAAAAAERVGTEaAEALAAAQEEAARrrreaeeTLGSARAEADQERERAREQSEELLASARKR 747
|
...
gi 1539972958 219 LAE 221
Cdd:NF041483 748 VEE 750
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
54-203 |
1.44e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.81 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 54 DVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGN 133
Cdd:NF041483 455 EAVAEGERIRGEARREAVQQIEEAARTAEELLTKAKADADELRSTATAESERVRTEAIERATTLRRQAEETLERTRAEAE 534
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 134 ---AEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQA------------RLVAQTEVVRAAHAESARLIDTAQAEAD 198
Cdd:NF041483 535 rlrAEAEEQAEEVRAAAERAARELREETERAIAARQAEAAeeltrlhteaeeRLTAAEEALADARAEAERIRREAAEETE 614
|
....*
gi 1539972958 199 RVRAE 203
Cdd:NF041483 615 RLRTE 619
|
|
| PRK13453 |
PRK13453 |
F0F1 ATP synthase subunit B; Provisional |
53-140 |
1.75e-03 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 184060 Cd Length: 173 Bit Score: 38.35 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 53 QDVLDHRDK-IVGDARTGAETTVNSAN--EQARTTIENARAEADRILSDAKAHA----DRMVAEATAHADRLVATAQSE- 124
Cdd:PRK13453 44 KDVMDKRERdINRDIDDAEQAKLNAQKleEENKQKLKETQEEVQKILEDAKVQArqqqEQIIHEANVRANGMIETAQSEi 123
|
90
....*....|....*....
gi 1539972958 125 ---AEQVIADGNAEYDELT 140
Cdd:PRK13453 124 nsqKERAIADINNQVSELS 142
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
48-230 |
2.15e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 39.42 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 48 ELDDAQDVLDHRDKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQ 127
Cdd:NF041483 700 ALAAAQEEAARRRREAEETLGSARAEADQERERAREQSEELLASARKRVEEAQAEAQRLVEEADRRATELVSAAEQTAQQ 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 128 V-------IADGNAEYDELTGRAQIDADRAIQAGKDSYERSVADGKAEQARLVAQTEVVR--------AAHAESARLIDT 192
Cdd:NF041483 780 VrdsvaglQEQAEEEIAGLRSAAEHAAERTRTEAQEEADRVRSDAYAERERASEDANRLRreaqeeteAAKALAERTVSE 859
|
170 180 190
....*....|....*....|....*....|....*...
gi 1539972958 193 AQAEADRVRAECDDYVDERMADFGGRLAEMEETLSTTR 230
Cdd:NF041483 860 AIAEAERLRSDASEYAQRVRTEASDTLASAEQDAARTR 897
|
|
| fliH |
PRK06669 |
flagellar assembly protein H; Validated |
60-175 |
3.91e-03 |
|
flagellar assembly protein H; Validated
Pssm-ID: 235850 [Multi-domain] Cd Length: 281 Bit Score: 37.69 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 60 DKIVGDARTGAETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEA-----EQVIADGNA 134
Cdd:PRK06669 58 KEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGyeegyEKGREEGLE 137
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1539972958 135 EYDELTGRAQidadRAIQAGKDSYERSVADGKAEQARLVAQ 175
Cdd:PRK06669 138 EVRELIEQLN----KIIEKLIKKREEILESSEEEIVELALD 174
|
|
| AtpF |
COG0711 |
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ... |
79-196 |
4.00e-03 |
|
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 440475 [Multi-domain] Cd Length: 152 Bit Score: 36.69 E-value: 4.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 79 EQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEqviadgnAEYDELTGRAQIDADRAIQAGKDSY 158
Cdd:COG0711 44 ERAKEEAEAALAEYEEKLAEARAEAAEIIAEARKEAEAIAEEAKAEAE-------AEAERIIAQAEAEIEQERAKALAEL 116
|
90 100 110
....*....|....*....|....*....|....*...
gi 1539972958 159 ERSVADGKAEQARLVAQTEVVRAAHaesARLIDTAQAE 196
Cdd:COG0711 117 RAEVADLAVAIAEKILGKELDAAAQ---AALVDRFIAE 151
|
|
| PRK01005 |
PRK01005 |
V-type ATP synthase subunit E; Provisional |
71-127 |
4.03e-03 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 179204 [Multi-domain] Cd Length: 207 Bit Score: 37.46 E-value: 4.03e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1539972958 71 ETTVNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQ 127
Cdd:PRK01005 19 EETLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQ 75
|
|
| SPFH_HflK |
cd03404 |
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and ... |
97-149 |
4.71e-03 |
|
High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.
Pssm-ID: 259802 [Multi-domain] Cd Length: 266 Bit Score: 37.49 E-value: 4.71e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1539972958 97 SDAKAHADRMVAEATAHADRLVATAQSEAEQVIADGNAEYDELTGRAQIDADR 149
Cdd:cd03404 180 NAARQDKERLINEAQAYANEVIPRARGEAARIIQEAEAYKAEVVARAEGDAAR 232
|
|
| HflC |
COG0330 |
Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational ... |
74-161 |
5.18e-03 |
|
Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440099 [Multi-domain] Cd Length: 279 Bit Score: 37.51 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539972958 74 VNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQViadgNAEYDELTGRAQIDADRAIQA 153
Cdd:COG0330 176 RMKAEREREAAILEAEGYREAAIIRAEGEAQRAIIEAEAYREAQILRAEGEAEAF----RIVAEAYSAAPFVLFYRSLEA 251
|
....*...
gi 1539972958 154 GKDSYERS 161
Cdd:COG0330 252 LEEVLSPN 259
|
|
| PRK01558 |
PRK01558 |
V-type ATP synthase subunit E; Provisional |
74-131 |
6.64e-03 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 179302 Cd Length: 198 Bit Score: 36.66 E-value: 6.64e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1539972958 74 VNSANEQARTTIENARAEADRILSDAKAHADRMVAEATAHADRLVATAQSEAEQVIAD 131
Cdd:PRK01558 17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRD 74
|
|
| PRK02292 |
PRK02292 |
V-type ATP synthase subunit E; Provisional |
69-135 |
8.28e-03 |
|
V-type ATP synthase subunit E; Provisional
Pssm-ID: 235026 [Multi-domain] Cd Length: 188 Bit Score: 36.51 E-value: 8.28e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1539972958 69 GAETTVNSANEQARTTIENARAEAD----RILSDAKAHADRMVAEATAHADRlvaTAQSEAEQVIADGNAE 135
Cdd:PRK02292 2 SLETVVEDIRDEARARASEIRAEADeeaeEIIAEAEADAEEILEDREAEAER---EIEQLREQELSSAKLE 69
|
|
| |
