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Conserved domains on  [gi|1539962239|emb|VEG24758|]
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sugar ABC transporter permease [Bifidobacterium dentium]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-302 1.86e-86

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 260.84  E-value: 1.86e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239   7 MKPAKKKVSKFSKRKVDPAFYWMTIPAAILVAIFLYWPFLQGAAYSFTNSQGYG-DFKFIGFKNYIAMFQDARVGNAYMF 85
Cdd:COG1175     1 MTTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  86 TIFIAVLITIGTNFIGMFLAVLLNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT---PLPELGQALHIDwlSTSMI 162
Cdd:COG1175    81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdygLLNALLGALGLE--PINWL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 163 SNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFD 242
Cdd:COG1175   159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 243 QIMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 302
Cdd:COG1175   239 LVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-302 1.86e-86

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 260.84  E-value: 1.86e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239   7 MKPAKKKVSKFSKRKVDPAFYWMTIPAAILVAIFLYWPFLQGAAYSFTNSQGYG-DFKFIGFKNYIAMFQDARVGNAYMF 85
Cdd:COG1175     1 MTTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  86 TIFIAVLITIGTNFIGMFLAVLLNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT---PLPELGQALHIDwlSTSMI 162
Cdd:COG1175    81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdygLLNALLGALGLE--PINWL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 163 SNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFD 242
Cdd:COG1175   159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 243 QIMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 302
Cdd:COG1175   239 LVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
29-301 3.93e-26

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 104.14  E-value: 3.93e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  29 MTIPAAILVAIFLYWPFLQGAAYSFTNSQGYG-DFKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAVL 107
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 108 LNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPELGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 187
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 188 YLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSlgaFDQIMALTKGGPDSKTETVSYLI 263
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDT---FPVIDAATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1539962239 264 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 301
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 83-290 6.19e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.45  E-value: 6.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  83 YMFTIFIAVLITIGTNFIGMFLAVLLNSRI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPELGqalhidwlstsm 161
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 162 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 241
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1539962239 242 DQIMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 290
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 98-293 2.69e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  98 NFIGMFLAVLLNSRiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpelgqalhidwlstsmISNPDLAWFPIVFLSI 177
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 178 WQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALTKGGPDSKTE 257
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1539962239 258 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 293
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 34-220 5.36e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.83  E-value: 5.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  34 AILVAIFLYWPFLQGAAYSFTNSQGygdfKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLA-VLLNSRI 112
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 113 AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTplpelgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGL 192
Cdd:TIGR03262  87 PGKGAFRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTAL 156

                         170       180
                  ....*....|....*....|....*...
gi 1539962239 193 QTIDNEIYEAASIDGVNAWQNFWQITFP 220
Cdd:TIGR03262 157 SLADGRLYEAARAMGASPWRTFFTVTLP 184
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
7-302 1.86e-86

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 260.84  E-value: 1.86e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239   7 MKPAKKKVSKFSKRKVDPAFYWMTIPAAILVAIFLYWPFLQGAAYSFTNSQGYG-DFKFIGFKNYIAMFQDARVGNAYMF 85
Cdd:COG1175     1 MTTTTSAAARRRRRRRRLAAYLFLLPALLLLLVFVLYPLLYTLYLSFTDWNLLGpPPEFVGLDNYARLFTDPRFWNALGN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  86 TIFIAVLITIGTNFIGMFLAVLLNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT---PLPELGQALHIDwlSTSMI 162
Cdd:COG1175    81 TLLFTVVSVPLQLVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPdygLLNALLGALGLE--PINWL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 163 SNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFD 242
Cdd:COG1175   159 GDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFD 238

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 243 QIMALTKGGPDSKTETVSYLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKE 302
Cdd:COG1175   239 LVYVLTGGGPGNSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRRRE 298
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 2-284 4.09e-41

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 144.85  E-value: 4.09e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239   2 TGNTAMKPAKKKVSKFSKRKVDPAFYWMTIPAAILVAIFLYWPFLqGAAYSFTN---SQGYGDFKFIGFKNYIAMFQDAR 78
Cdd:COG4209     5 AAKAKRKKKKRKKSFLKRLKRDWQLYLMLLPGLIYLLIFSYLPMY-GIVIAFKDynpFKGIFGSPWVGLKNFKFLFSSPD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  79 VGNAYMFTIFIAVLITIGTNFIGMFLAVLLNS--RIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTP----LPELGQAL 152
Cdd:COG4209    84 FWRVLRNTLLISLLKLVFGFPLPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIV-YQFLSPdtglVNQLLRAL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 153 HIDwlSTSMISNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVL 232
Cdd:COG4209   163 GGE--PINFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPTIVILLIL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1539962239 233 SLKNSLGA-FDQIMALTKGGPDSKTETVSYLIFQNGLGNGEYSYqmANAVTFF 284
Cdd:COG4209   241 NIGNILNVgFEQIYLLYNPLNYSTSDVIDTYVYRIGLQNGDYSY--ATAVGLF 291
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
29-301 3.93e-26

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 104.14  E-value: 3.93e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  29 MTIPAAILVAIFLYWPFLQGAAYSFTNSQGYG-DFKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAVL 107
Cdd:PRK10561    2 LVAPQLIITVIFFIWPAGEALWYSLQSVDPFGfSSQFVGLDNFVALFHDSYYLDSFWTTIKFSTLVTVSGLLVSLFFAAL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 108 LNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPELGQALHIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLL 187
Cdd:PRK10561   82 VDYVVRGSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLF 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 188 YLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP--FF--TINMVLSLKNSlgaFDQIMALTKGGPDSKTETVSYLI 263
Cdd:PRK10561  162 FFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAPvsFFllVVNLVYAFFDT---FPVIDAATSGGPVQATTTLIYKI 238

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1539962239 264 FQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGK 301
Cdd:PRK10561  239 YREGFTGLDLSSSAAQSVVLMFLVIVLTVVQFRYVESK 276
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 27-304 1.23e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 92.13  E-value: 1.23e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  27 YWMTIPAAILVAIFLYWPFLQGAAYSFTNSQGYGDFKF-IGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLA 105
Cdd:COG1176    12 LLLLLPALLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPgFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 106 VLL-NSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMT--PLPELGQALHIDWLSTSMISNPdlawFPIVFLSIWQGVA 182
Cdd:COG1176    92 YFLaRAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRngLLNSLLLALGLIDEPLRLLYTE----FAVVIGLVYVYLP 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 183 YSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFD--QIMaltkGGPDSKteTVS 260
Cdd:COG1176   168 FMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVtpALL----GGGKVL--MIG 241

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 1539962239 261 YLIFQNGLGNGEYSYQMANAVTFFIVLAILAFVQLKFFSGKEKV 304
Cdd:COG1176   242 NLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
27-293 2.90e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 81.75  E-value: 2.90e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  27 YWMTIPAAILVAIFLYWPFLQGAAYSFTNsqgygdfkfiGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAV 106
Cdd:COG1178    10 RLLLLLLALLLALLVLLPLLALLLRAFTD----------GLANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAW 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 107 LLN-SRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFmTPLPELGQALHidwlSTSMISNPDL-AWFPIVFLSIWQGVAYS 184
Cdd:COG1178    80 LLArTDFPGRRLLRWLLLLPLALPPYVVALAWIALF-GPNGLLNTLLR----ALFGLEPPDIyGLGGIILVLVLFNYPYV 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 185 TLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALtkGGpdsKTETVSYLIF 264
Cdd:COG1178   155 YLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL--GG---GYTTLTTAIY 229

                         250       260
                  ....*....|....*....|....*....
gi 1539962239 265 QngLGNGEYSYQMANAVTFFIVLAILAFV 293
Cdd:COG1178   230 Q--AWLGDFDLGAAAALALVLLLLVLLLL 256
malF PRK10999
maltose ABC transporter permease MalF;
64-297 4.96e-17

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 81.16  E-value: 4.96e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  64 FIGFKNYIAMFQDARVGNAYMfTIFI-----AVLITIGTNFIGMFLAVLLN-SRIAFKNGFRAIFFIPYT----LSVLVi 133
Cdd:PRK10999  264 TIGWKNFTRVFTDEGIQKPFI-AIFIwtvvfSLLTVVLTVAVGMVLACLVQwEALKGKAVYRVLLILPYAvpsfISILI- 341

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 134 gyvFKYIFMTPLPELGQAL-HIDWLSTSMISNPDLAWFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQ 212
Cdd:PRK10999  342 ---FKGLFNQSFGEINMMLsALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 418

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 213 NFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALTKGGPDSKTET---------VSY---LIFQNGlGNGEYSYQMANA 280
Cdd:PRK10999  419 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTtpagytdllVSYtyrIAFEGG-GGQDFGLAAAIA 497

                         250
                  ....*....|....*..
gi 1539962239 281 VTFFIVLAILAFVQLKF 297
Cdd:PRK10999  498 TLIFLLVGALAILNLKA 514
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 34-293 7.17e-15

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 72.84  E-value: 7.17e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  34 AILVAIFLYWPFLQGAAYSFtNSQGYGDFKFIGF--KNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAVLLN-S 110
Cdd:COG1177    13 LALVLLFLYLPILVLVLYSF-NDSWFLTFPPEGFtlRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALArY 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 111 RIAFKNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPelgqalhidwLSTSMISnpdlawfpIVFLSIWQGVAYSTLLYLA 190
Cdd:COG1177    92 RFRGRRLLLALLLLPLVVPGIVLGVAL-LLLFSALG----------LSGGLWG--------LILAHVVFTLPFVVLVVLA 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 191 GLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFdqIMALTKGGPDskTETVSYLIFqNGLGN 270
Cdd:COG1177   153 RLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEF--VITLFLAGPG--VTTLPVYIY-SMIRR 227

                         250       260
                  ....*....|....*....|...
gi 1539962239 271 GeySYQMANAVTFFIVLAILAFV 293
Cdd:COG1177   228 G--ISPEINALSTLLILLSLLLL 248
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
12-293 2.10e-12

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 67.11  E-value: 2.10e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  12 KKVSKFSKRKVDPAFYWMTIPAAILVAIFLYWPFLQGAAYSFTNSQGYGdfkfIGFKNYIAMFQDARVGNAYMFTIFIAV 91
Cdd:COG1178   273 GRARRPRRVKLGRWRWLALALCLLLVLLGLLLPLLALLLWSLTKALDDN----LTLDNYRFVLLDPSLLRALLNSLLLAL 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  92 LITIGTNFIGMFLAVLLN-SRIAFKNGFRAIFFIPYTLS--VLVIGYVFKYIFMTPLPeLGQALHIDWLSTSMIsnpdla 168
Cdd:COG1178   349 LAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPgiVLGLGLLLLFNRPLPLL-LYGTLAILVLAYVVR------ 421

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 169 WFPIVFLSIwqgvaystllyLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALt 248
Cdd:COG1178   422 FLPFALRSL-----------EAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLL- 489

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1539962239 249 kGGPDskTETVSYLIFQNglgNGEYSYQMANAVTFFIVLAILAFV 293
Cdd:COG1178   490 -RPPG--FETLAVLIYQL---ASSGRYGEAAALALLLVLVSLLPV 528
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 83-290 6.19e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 63.45  E-value: 6.19e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  83 YMFTIFIAVLITIGTNFIGMFLAVLLNSRI-AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPELGqalhidwlstsm 161
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARKRgKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGI------------ 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 162 isNPDLAWFPIVFLSIWQGvAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAF 241
Cdd:cd06261    69 --LPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEF 145

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1539962239 242 DQIMALTKGGPDskteTVSYLIFQNGLGNGEYSYQMANAVTFFIVLAIL 290
Cdd:cd06261   146 ALVSFLGGGEAP----GPGTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 19-295 1.78e-11

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 63.23  E-value: 1.78e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  19 KRKVDPAFYWMTIPAAILVAIFLYWPFLQGAAYSFTnsqgygdfkfIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTN 98
Cdd:COG0555     2 SRRVLPGFGLTLGLTLLYLSLIVLLPLAALVLKAAG----------LGWAEFWAVLTSPRVLAALKLSLGTALIAALINL 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  99 FIGMFLAVLLnSRIAF--KNGFRAIFFIPYTLSVLVIGYVFKYIFMTP--LPELGQALHIDWLSTsmisnpdlaWFPIVF 174
Cdd:COG0555    72 VFGLPLAWVL-VRYRFpgKRLVDALVDLPFALPTAVAGIALLLLFGPNgwLGQLLAPLGIKVAFT---------PLGIVL 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 175 LSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALTkGGPDS 254
Cdd:COG0555   142 AQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEFGAVIFIA-GNLPM 220

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1539962239 255 KTETVSYLIFQNGLgngEYSYQMANAVTffIVLAILAFVQL 295
Cdd:COG0555   221 KTEILPLLIYLKLE---EGDYAGATAIA--LVLLLISFLLL 256
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 15-224 4.41e-11

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 62.04  E-value: 4.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  15 SKFSKRKVDPAFYWMTIPAAILVAIFLYwPFLQGAAYSFTNSQGYGDFKF------IGFKNYIAMFQDARVGNAYMFTIF 88
Cdd:COG0395     3 ATARRRRRRLGRILLYLLLILLALLFLF-PLYWMVVTSFKPPAEIFSGPPsllpseFTLENYRAAFTDGPFGRYLLNSLI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  89 IAVLITIGTNFIGMFLAVLLnSRIAFKnGFRAIFFIpyTLSVLVIGYVfkyIFMTPLPELGQALHidWLSTsmisnpdla 168
Cdd:COG0395    82 VAVVSTVLSLLLSSLAAYAL-ARFRFR-GRKLLFLL--ILATLMIPGQ---VLLIPLYLLFRQLG--LLNT--------- 143

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1539962239 169 WFPIVFLSIWQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP 224
Cdd:COG0395   144 YWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKP 199
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 98-293 2.69e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.77  E-value: 2.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  98 NFIGMFLAVLLNSRiaFKNGFRAIFFIPYTLSVLVIGYVFKYIFMtplpelgqalhidwlstsmISNPDLAWFPIVFLSI 177
Cdd:pfam00528   2 IPLGIIAALRRGRR--LDRLLRPLIDLLQALPSFVLAILLVVIAI-------------------LSILGHGILPAIILAL 60

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 178 WQGVAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALTKGGPDSKTE 257
Cdd:pfam00528  61 LGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLL 140

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1539962239 258 TVSYLIFQnglgngeysYQMANAVTFFIVLAILAFV 293
Cdd:pfam00528 141 IEAILGYD---------YPEIQGPVLAAALILLLLN 167
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 19-224 7.00e-08

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 52.70  E-value: 7.00e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  19 KRKVDPAFYWMTIPAAILVAIFLYwPFLQGAAYSFTNSQGygdfkfIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTN 98
Cdd:PRK15050   18 RRRRLRPLLWLLLPLLVLAPLVVY-PLVRVVLQSLTGEHG------LGLATYRAVLGSPDFRGALLTTLQIAFASTAGCL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  99 FIGMFLAVLLnsriafkngfraiFFIPYTLSVLVIGYVFKYIfmtPLPELGQALHIDWL--STSMISNPDLAWF-----P 171
Cdd:PRK15050   91 VLGVLLALVL-------------AFVPFPGASLVGRFIDTFV---AFPSFLITLAFTFLygSAGSVNIALQRLFgleapP 154

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1539962239 172 IVFL-SIWQGVAYSTLLY--------LAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGP 224
Cdd:PRK15050  155 LDFLySPGGVILAEITFYtpfvvrplLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWP 216
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 34-220 5.36e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.83  E-value: 5.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  34 AILVAIFLYWPFLQGAAYSFTNSQGygdfKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLA-VLLNSRI 112
Cdd:TIGR03262  11 ILALLLFLLLPLLALLTKSVYDSDG----DFIGLANFAEYFATPGLLQSLGNSLTVSAIVTAIVVPLAFAFAyALTRSRI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 113 AFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTplpelgQALHIDWLSTSMISNPdlawFPIVFLSIWQGVAYSTLLYLAGL 192
Cdd:TIGR03262  87 PGKGAFRLVALLPLLAPSLLPAISLIYLFGN------QGLLKGLLGGFSIYGF----WGIVIGEVFYTFPHALMILVTAL 156

                         170       180
                  ....*....|....*....|....*...
gi 1539962239 193 QTIDNEIYEAASIDGVNAWQNFWQITFP 220
Cdd:TIGR03262 157 SLADGRLYEAARAMGASPWRTFFTVTLP 184
modB PRK09421
molybdate ABC transporter permease subunit;
88-241 5.13e-06

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 46.84  E-value: 5.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  88 FIAVLITIGtnfIGMFLAVLLnSRIAF--KNGFRAIFFIPYTLSVLVIGYVFkYIFMTPLPELGQALhidwlstsmisnp 165
Cdd:PRK09421   19 SVAVLFSLP---FGILVAWLL-ARCRFpgKSLLDSLLHLPLVLPPVVTGYLL-LISMGRRGFIGQWL------------- 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 166 dLAWFPIVFLSIWQGVAYST------LLYLA---GLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKN 236
Cdd:PRK09421   81 -YEWFGISFAFSWRGAALAAavmafpLMVRAirlSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFAR 159


                  ....*
gi 1539962239 237 SLGAF 241
Cdd:PRK09421  160 SLGEF 164
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 34-233 7.98e-06

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 46.30  E-value: 7.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  34 AILVAIFLYWPFLQGAAYSFTNSQG----YGDFKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAVLLn 109
Cdd:COG3833    22 LIILAIIALFPILWVVSASFNPGGSlyssSLIPENFTLENYKKLFTETPFLRWFLNSLIVAVVTAIISVFLAALAAYAF- 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 110 SRIAFK------NGFRAIFFIPYTLSVLVIgyvfkYIFMTPLPELGQ--ALHIDWLSTSMISNpdlawfpivflsIWQGV 181
Cdd:COG3833   101 SRFRFKgrkaglLALLLLQMFPAFLALVAL-----YLLLSALGLLNTllGLILVYLGGAIPFN------------TWLMK 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1539962239 182 AYstllylagLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLS 233
Cdd:COG3833   164 GY--------FDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLS 207
cysT CHL00187
sulfate transport protein; Provisional
 82-265 2.97e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 44.62  E-value: 2.97e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  82 AYMFTIFIAVLITIGTNFIGMFLA-VLLNSRIAFKNGFRAIFFIPYTLSVLVIGYVFKYIFMTPLPeLGQALhiDWLSTS 160
Cdd:CHL00187   56 AYSLTLSMALIAALINGFFGLLIAwVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGW-IGHLL--SHLGIQ 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 161 MISNPDLAWFPIVFLSIwqgvAYSTLLYLAGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGA 240
Cdd:CHL00187  133 IVFTKLGVLLAMIFVSF----PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGE 208

                         170       180
                  ....*....|....*....|....*
gi 1539962239 241 FDQIMALTKGGPdSKTETVSYLIFQ 265
Cdd:CHL00187  209 YGSIVIISSNIP-FKDLVASVLIFQ 232
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 34-303 6.60e-05

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 43.69  E-value: 6.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239  34 AILVA--IFLYWPFLQGAAYSFTNSQGYGDFKFIGFKNYIAMFQDARVGNAYMFTIFIAVLITIGTNFIGMFLAVLLNSR 111
Cdd:PRK10592   14 VILVLgfTFLYAPMLMLVIYSFNSSKLVTVWAGWSTRWYGELFRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVMVRF 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 112 IAFK--NGFRAIFFIPYTLSVLVIGYVFKYIFMTplpeLGQAlhIDWLStsmisnpDLAWFPIVFLSIWQGVAYSTLLYL 189
Cdd:PRK10592   94 GRFRgsNGFAFMITAPLVMPDVITGLSLLLLFVA----LAHA--IGWPA-------DRGMLTIWLAHVTFCTAYVAVVIS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 190 AGLQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGafDQIMALTKGGPDSKteTVSYLIFQNgLG 269
Cdd:PRK10592  161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLD--DLVIASFVSGPGAT--TLPMLVFSS-VR 235

                         250       260       270
                  ....*....|....*....|....*....|....
gi 1539962239 270 NGEYSYQMANAVTFFIVLAILAFVQLKFFSGKEK 303
Cdd:PRK10592  236 MGVNPEINALATLILGVVGIVGFIAWYLMARAEK 269
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
192-290 1.24e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 42.82  E-value: 1.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1539962239 192 LQTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLSLKNSLGAFDQIMALTkGGPDSKTETVSYLIFqngLGNG 271
Cdd:PRK10971  163 LEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAVIFIA-GNIAWKTEVTSLMIF---VRLQ 238

                          90
                  ....*....|....*....
gi 1539962239 272 EYSYQMANAVTFFIVLAIL 290
Cdd:PRK10971  239 EFDYPAASAIASVILAASL 257
malG PRK10998
maltose ABC transporter permease MalG;
193-233 7.97e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 37.38  E-value: 7.97e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1539962239 193 QTIDNEIYEAASIDGVNAWQNFWQITFPLIGPFFTINMVLS 233
Cdd:PRK10998  182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILS 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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