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Conserved domains on  [gi|2329595767|gb|UZO68803|]
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cytochrome b, partial (mitochondrion) [Hipposideros ater]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 756.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIEN 374
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 756.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIEN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-373 1.09e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.21  E-value: 1.09e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   9 PLFKIINDsFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 88
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  89 MFFICLFLHVGRGIYYGSYTYTE--TWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWG 166
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 167 GFSVDKATLTRFFALH-FLLPFIITALVVVHLLFLHETGSSNPTGI----PSNADMIPFHPYYTIKDILGLTLMIMLLLS 241
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 242 LVLFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSILILAMFPLLHTSKQRSMTFRP 319
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 320 ISQCLFWLLVTDLLALTWIGGQPVehPFILIGQLASILYFLIILVLLPLASIAE 373
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.40e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.88  E-value: 7.40e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   9 PLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  89 MFFICLFLHVGRGIYYGSY--TYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2329595767 167 GFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSS 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 5.34e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.47  E-value: 5.34e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  18 FIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  98 VGRGIYYGSYTYT--ETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2329595767 176 TRFFALHFLLPFIITALVVVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-339 9.51e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 9.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 236 IMLLLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSM 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 2329595767 316 TF-RPISQCLFwlLVTDLLALtWIG 339
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 756.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00100  161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00100  241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00100  321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIEN 374
CYTB MTH00119
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 683.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00119    2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00119   82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00119  162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00119  242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00119  322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALEN 375
CYTB MTH00131
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 663.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00131  161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00131  241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00131  321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00074
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 646.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00074    2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00074   82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00074  162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00074  242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00074  322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00191
cytochrome b; Provisional
 4-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 622.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPL 368
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 11-365 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 607.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  11 FKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMF 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  91 FICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 171 DKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLVLFSPDLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQCLFWLLVT 330
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2329595767 331 DLLALTWIGGQPVEHPFILIGQLASILYFLIILVL 365
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 4-374 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 591.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLEN 374
CYTB MTH00145
cytochrome b; Provisional
 1-365 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 585.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   1 MTNIRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  81 YLHANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 161 VEWVWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLL 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 241 SLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPI 320
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 2329595767 321 SQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVL 365
Cdd:MTH00145  322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00016
cytochrome b; Validated
 4-370 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 558.14  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00016    5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00016   85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00016  165 LWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00016  245 LLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQI 324

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFlIILVLLPLAS 370
Cdd:MTH00016  325 LFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLM 370
CYTB MTH00022
cytochrome b; Validated
 4-374 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 511.17  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00022  163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00022  243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00022  323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELEN 373
CYTB MTH00053
cytochrome b; Provisional
 4-374 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 508.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLEN 375
CYTB MTH00224
cytochrome b; Provisional
 4-374 7.74e-173

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 486.35  E-value: 7.74e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   4 IRKSHPLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLH 83
Cdd:MTH00224    5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  84 ANGASMFFICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEW 163
Cdd:MTH00224   85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 164 VWGGFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLV 243
Cdd:MTH00224  165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQC 323
Cdd:MTH00224  245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2329595767 324 LFWLLVTDLLALTWIGGQPVEHPFILIGQLASILYFlIILVLLPLASIAEN 374
Cdd:MTH00224  325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYF-SYFIISPAISKLWD 374
CYTB MTH00033
cytochrome b; Provisional
 16-374 1.44e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.99  E-value: 1.44e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  16 DSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFFICLF 95
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  96 LHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVDKATL 175
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 176 TRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLtLMIMLLLSLVLFSP---DLLGD 252
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGF-LILFGVFVIIGIEPrieTLLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 253 PDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQCLFWLLVTDL 332
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2329595767 333 LALTWIGGQPV-EHPFILIGQLASILYFLIILVLLPLASIAEN 374
Cdd:MTH00033  332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
9-373 1.09e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 377.21  E-value: 1.09e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   9 PLFKIINDsFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 88
Cdd:COG1290    19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  89 MFFICLFLHVGRGIYYGSYTYTE--TWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWG 166
Cdd:COG1290    98 LFFAAVYLHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 167 GFSVDKATLTRFFALH-FLLPFIITALVVVHLLFLHETGSSNPTGI----PSNADMIPFHPYYTIKDILGLTLMIMLLLS 241
Cdd:COG1290   178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 242 LVLFSPDllGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVIALILSILILAMFPLLHTSKQRSMTFRP 319
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2329595767 320 ISQCLFWLLVTDLLALTWIGGQPVehPFILIGQLASILYFLIILVLLPLASIAE 373
Cdd:COG1290   336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 12-366 1.91e-119

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 349.62  E-value: 1.91e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  12 KIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  92 ICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVD 171
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 172 KATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLtLMIMLLLSLVLFSPDLLG 251
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLG 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 252 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSkqrSMTFRPISQCLFWLLVTD 331
Cdd:MTH00086  240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 2329595767 332 LLALTWIGGQPVEHPFILIGQLASILYFLIILVLL 366
Cdd:MTH00086  317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.40e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 283.88  E-value: 7.40e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767   9 PLFKIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  89 MFFICLFLHVGRGIYYGSY--TYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2329595767 167 GFSVDKATLTRFFALHFLLPFIITALVVVHLLFLHETGSS 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 12-364 6.85e-95

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 287.26  E-value: 6.85e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  12 KIINDSFIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFF 91
Cdd:MTH00046    3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  92 ICLFLHVGRGIYYGSYTYTETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVD 171
Cdd:MTH00046   83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 172 KATLTRFFALHFLLPFIITALVVVHLLFLHETGSSNPTGIPSN-ADMIPFHPYYTIKDILGLTLMIMLLLSLVLFSPDLL 250
Cdd:MTH00046  163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVialilSILILAMFPLLHTSKQRSMTFRPISQCLFWLLVT 330
Cdd:MTH00046  243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGL-----VLVLSFLFFLWVPTFNGSSVYSVWRQVNFWLIVS 317

                         330       340       350
                  ....*....|....*....|....*....|....
gi 2329595767 331 DLLALTWIGGQPVEHPFILIGQLASILYFLIILV 364
Cdd:MTH00046  318 LFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 5.34e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.47  E-value: 5.34e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  18 FIDLPTPSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  98 VGRGIYYGSYTYT--ETWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2329595767 176 TRFFALHFLLPFIITALVVVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 3.26e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 165.13  E-value: 3.26e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 207 NPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2329595767 287 KLGGVIALILSILILAMFPLLHTSKQRSmTFRPISQCLFWLLVTDLLALTWIGGQPVEHPFILIGQLA 354
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 2.59e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.86  E-value: 2.59e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  88 SMFFICLFLHVGRGIYYGSYTYTE--TWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 166 GGFSVDKATLTRFFALHF-LLPFIITALVVVHLLFLHETGSSNPTGIPSNADMIPFHPYYTIKDILGLTLMIMLLLSLVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2329595767 245 FSPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 5.52e-41

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 139.54  E-value: 5.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSMTFRPISQCLFWLLVTDLLALTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2329595767 338 IGGQPVEHPFILIGQLASILY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 5.74e-41

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 143.70  E-value: 5.74e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  33 FGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIYYGSYTYTE- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 112 -TWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVDKATLTRFFALH-FLLPFII 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2329595767 190 TALVVVHLLFLHETGSSNP 208
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-208 1.29e-33

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.06  E-value: 1.29e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767  24 PSSISSWWNFGSLLGVCLMVQILTGLFLAMHYTSDTTTAFYSVTHICRDVNYGWILRYLHANGASMFFICLFLHVGRGIY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 104 YGSYTYTE--TWNIGIVLLFTIMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWVWGGFSVDKATLTRFFAL 181
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*...
gi 2329595767 182 H-FLLPFIITALVVVHLLFLHETGSSNP 208
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 236-325 3.99e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.18  E-value: 3.99e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 236 IMLLLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSM 315
Cdd:COG5679    49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123

                          90
                  ....*....|.
gi 2329595767 316 TF-RPISQCLF 325
Cdd:COG5679   124 PFrRPVATAVF 134
petD CHL00058
cytochrome b6/f complex subunit IV
 229-339 3.87e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 52.31  E-value: 3.87e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 229 ILGltlMIMLLLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLL- 307
Cdd:CHL00058   44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLe 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2329595767 308 HTSKQRSMTFRPISQCLFwlLVTDLLALtWIG 339
Cdd:CHL00058  116 NVNKFQNPFRRPVATTVF--LIGTAVAL-WLG 144
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 236-339 9.51e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.95  E-value: 9.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329595767 236 IMLLLSLVLFSPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVIALILSILILAMFPLLHTSKQRSM 315
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 2329595767 316 TF-RPISQCLFwlLVTDLLALtWIG 339
Cdd:TIGR01156 123 PFrRPVATTVF--LFGTVVAL-WLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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