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Conserved domains on  [gi|2183968838|gb|UJS25234|]
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dimethyl sulfoxide reductase anchor subunit [Thiothrix winogradskyi]

Protein Classification

dimethyl sulfoxide reductase anchor subunit family protein( domain architecture ID 10007172)

dimethyl sulfoxide (DMSO) reductase anchor subunit family protein similar to Escherichia coli dimethyl sulfoxide (DMSO) reductase anchor subunit DmsC which anchors the DMSO reductase complex to the periplasmic side of the inner membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
1-321 1.23e-53

DMSO reductase anchor subunit DmsC [Energy production and conversion];


:

Pssm-ID: 442531  Cd Length: 282  Bit Score: 177.00  E-value: 1.23e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838   1 MHPAFSVIFLTTLIGAGQGLFLALYTGQVYNTFGVVGDAMspqalYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATM 80
Cdd:COG3302     1 MHPEWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKR-----LLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSN 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  81 WRTSWLAREVIVLPAFAGMAFVWGALHYLGIDPvvfttgtveVKLTLLVGLVAGVLAFLLYICTGMIYaAIKFIQEWATP 160
Cdd:COG3302    76 LRTSWLSREIVAAVLFFALAGLYALLAWLGKLP---------GGLRKLLGLLAALLGLALVFAMAMIY-QIKTVPTWNTP 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 161 LTIVNYTLLGLASGFSLAAALSAHY--CSSLVDAYALWALVFTLLGFVSRMFALRRNARLKykstactaigvrhpkitqi 238
Cdd:COG3302   146 LTPLNFLLTALALGALLAALLLALAgvDLRALKALALLALLALVLALAVLVAYLARLASIG------------------- 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 239 SQGAMGGSFNTREFFHhkslqfMQGIKVFFLIMVFIVPVtLVVIGWSNQLAVVLLAAALIQYVGLLAERWFFFAQANHPQ 318
Cdd:COG3302   207 SATQTAAALLTREFGH------LLALRLVLLALGFVLPL-LPLLRGSTAALALLALAFALVLAGELVGRWLFYALAVHVG 279

                  ...
gi 2183968838 319 NLY 321
Cdd:COG3302   280 MLY 282
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
1-321 1.23e-53

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 177.00  E-value: 1.23e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838   1 MHPAFSVIFLTTLIGAGQGLFLALYTGQVYNTFGVVGDAMspqalYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATM 80
Cdd:COG3302     1 MHPEWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKR-----LLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSN 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  81 WRTSWLAREVIVLPAFAGMAFVWGALHYLGIDPvvfttgtveVKLTLLVGLVAGVLAFLLYICTGMIYaAIKFIQEWATP 160
Cdd:COG3302    76 LRTSWLSREIVAAVLFFALAGLYALLAWLGKLP---------GGLRKLLGLLAALLGLALVFAMAMIY-QIKTVPTWNTP 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 161 LTIVNYTLLGLASGFSLAAALSAHY--CSSLVDAYALWALVFTLLGFVSRMFALRRNARLKykstactaigvrhpkitqi 238
Cdd:COG3302   146 LTPLNFLLTALALGALLAALLLALAgvDLRALKALALLALLALVLALAVLVAYLARLASIG------------------- 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 239 SQGAMGGSFNTREFFHhkslqfMQGIKVFFLIMVFIVPVtLVVIGWSNQLAVVLLAAALIQYVGLLAERWFFFAQANHPQ 318
Cdd:COG3302   207 SATQTAAALLTREFGH------LLALRLVLLALGFVLPL-LPLLRGSTAALALLALAFALVLAGELVGRWLFYALAVHVG 279

                  ...
gi 2183968838 319 NLY 321
Cdd:COG3302   280 MLY 282
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
3-185 1.37e-11

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 64.00  E-value: 1.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838   3 PAFSVIFLTTLIGAGQGLFLALYTGQVYntfgvvGDAMSPQALYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATMWR 82
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAFVLLF------GKNQALRQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  83 TSWLAREVivlpAFAGMAFVWGALHYLgidpvVFTTGTVEVKLTLLVGLVAGVLAFLLYICTGMIYaAIKFIQEWATPLT 162
Cdd:pfam04976  80 ASMLSNEI----AAGAIFFALAGLYWL-----VAILGKLPPALGHLWLIVTMALGIIFMYMMNMVY-HIDTVPTWNTGIT 149
                         170       180
                  ....*....|....*....|...
gi 2183968838 163 IVNYTLLGLASGFSLAAALSAHY 185
Cdd:pfam04976 150 TWGFYLTVLLGGPTLGYALLYFA 172
 
Name Accession Description Interval E-value
DmsC COG3302
DMSO reductase anchor subunit DmsC [Energy production and conversion];
1-321 1.23e-53

DMSO reductase anchor subunit DmsC [Energy production and conversion];


Pssm-ID: 442531  Cd Length: 282  Bit Score: 177.00  E-value: 1.23e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838   1 MHPAFSVIFLTTLIGAGQGLFLALYTGQVYNTFGVVGDAMspqalYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATM 80
Cdd:COG3302     1 MHPEWPLVLFTVLSQAGVGLFLALALALLLGLLSPASRKR-----LLRALLLALVLLGVGLLASTFHLGHPLRAWRAFSN 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  81 WRTSWLAREVIVLPAFAGMAFVWGALHYLGIDPvvfttgtveVKLTLLVGLVAGVLAFLLYICTGMIYaAIKFIQEWATP 160
Cdd:COG3302    76 LRTSWLSREIVAAVLFFALAGLYALLAWLGKLP---------GGLRKLLGLLAALLGLALVFAMAMIY-QIKTVPTWNTP 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 161 LTIVNYTLLGLASGFSLAAALSAHY--CSSLVDAYALWALVFTLLGFVSRMFALRRNARLKykstactaigvrhpkitqi 238
Cdd:COG3302   146 LTPLNFLLTALALGALLAALLLALAgvDLRALKALALLALLALVLALAVLVAYLARLASIG------------------- 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 239 SQGAMGGSFNTREFFHhkslqfMQGIKVFFLIMVFIVPVtLVVIGWSNQLAVVLLAAALIQYVGLLAERWFFFAQANHPQ 318
Cdd:COG3302   207 SATQTAAALLTREFGH------LLALRLVLLALGFVLPL-LPLLRGSTAALALLALAFALVLAGELVGRWLFYALAVHVG 279

                  ...
gi 2183968838 319 NLY 321
Cdd:COG3302   280 MLY 282
DmsC pfam04976
DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of ...
3-185 1.37e-11

DMSO reductase anchor subunit (DmsC); The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).


Pssm-ID: 398575  Cd Length: 275  Bit Score: 64.00  E-value: 1.37e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838   3 PAFSVIFLTTLIGAGQGLFLALYTGQVYntfgvvGDAMSPQALYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATMWR 82
Cdd:pfam04976   6 HELPLVIFTVLAQSVVGAFIVFAFVLLF------GKNQALRQYVHKSMFVLLALLGIGFIASIMHLGSPLRAFNSLNRVG 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  83 TSWLAREVivlpAFAGMAFVWGALHYLgidpvVFTTGTVEVKLTLLVGLVAGVLAFLLYICTGMIYaAIKFIQEWATPLT 162
Cdd:pfam04976  80 ASMLSNEI----AAGAIFFALAGLYWL-----VAILGKLPPALGHLWLIVTMALGIIFMYMMNMVY-HIDTVPTWNTGIT 149
                         170       180
                  ....*....|....*....|...
gi 2183968838 163 IVNYTLLGLASGFSLAAALSAHY 185
Cdd:pfam04976 150 TWGFYLTVLLGGPTLGYALLYFA 172
NrfD COG3301
Nitrite/polysulfide reductase, membrane component NrfD/PsrC [Inorganic ion transport and ...
44-211 4.86e-10

Nitrite/polysulfide reductase, membrane component NrfD/PsrC [Inorganic ion transport and metabolism];


Pssm-ID: 442530  Cd Length: 297  Bit Score: 59.54  E-value: 4.86e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  44 ALYVAGTVIVTVLMGLGLFASFFHLGRPERAWRAATMWR-TSWLAREVIVLPAFAGMAFVWGALHYLGIdpvvfTTGTVE 122
Cdd:COG3301    46 ALRRAGALIALVFLAIGLLLLVLDLGRPLRFWKLLLNPNpTSWMSWGVWLLSLFGLLALLYAALLLKKE-----LRLPLL 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 123 VKLTLLVGLVAGVLAFLLYICTGMIYAAIKFIQEWATPLTIVNYTLLGLASGFSLAAALSAHYCS---------SLVDAY 193
Cdd:COG3301   121 EKLRRALALLGALLALLLAAYTGFLLSAAKARPLWNTPLLPVLFLVSALSTGAAALLLLALLFGKepseelhllHRLDVA 200
                         170
                  ....*....|....*...
gi 2183968838 194 ALWALVFTLLGFVSRMFA 211
Cdd:COG3301   201 LILLELVLLAAFLVGLHL 218
NrfD pfam03916
Polysulphide reductase, NrfD; NrfD is an integral transmembrane protein with loops in both the ...
37-210 5.68e-03

Polysulphide reductase, NrfD; NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway.


Pssm-ID: 397824  Cd Length: 313  Bit Score: 38.16  E-value: 5.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838  37 GDAMSPQALYVAGTVIVTVL-MGLGLFASFFHLGRPERAWRAATMWR-TSWLAREVIVLPAFAGMAFVWGALHY------ 108
Cdd:pfam03916  40 KNEGKPFNLIIRTGALLAPLaVLAGLLILIFDLGRPWRFWKLLRYYNfSSIMSWGVMLLSLYMVVLVLWLAVIFekdlaa 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2183968838 109 -----LGIDPVVFTTGTVEVKltlLVGLVAGVLAFLLYICTGMIYAAIKFIQEWATPLTIVNYTLLGLASGFS------- 176
Cdd:pfam03916 120 lglpaLGFLAKLISLAERVAR---GLAIIALILAVLLGAYTGFLLSAVYSRPLWNSPLLPPLFLASAISSGLAvlllaml 196
                         170       180       190
                  ....*....|....*....|....*....|....
gi 2183968838 177 LAAALSAHYCSSLVDAYALWALVFTLLGFVSRMF 210
Cdd:pfam03916 197 LAFRFETESPDIGLLHKLEGPVILGEAGLLVAFF 230
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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