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Conserved domains on  [gi|2181837017|gb|UJJ81337|]
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CYCLOIDEA1, partial [Lobelia lasiantha]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCP super family cl47831
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 1-110 5.23e-22

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


The actual alignment was detected with superfamily member pfam03634:

Pssm-ID: 460998  Cd Length: 152  Bit Score: 84.32  E-value: 5.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKLkgagTGSSNVPNTATSNSSSTTSECEVLSGIIDEASFSLPMENNIK 80
Cdd:pfam03634  28 ARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKEL----TGTGTIPANFSSLSISLRSSGESVSGIDEQAVALLNFHSTNQ 103

                          90       100       110
                  ....*....|....*....|....*....|
gi 2181837017  81 KATEKAKPSVTRDKKAARGSTRAFHPLAKE 110
Cdd:pfam03634 104 NSARKKGQNMKSKKSKGSSKLSASRSLAKE 133
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 1-110 5.23e-22

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 84.32  E-value: 5.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKLkgagTGSSNVPNTATSNSSSTTSECEVLSGIIDEASFSLPMENNIK 80
Cdd:pfam03634  28 ARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKEL----TGTGTIPANFSSLSISLRSSGESVSGIDEQAVALLNFHSTNQ 103

                          90       100       110
                  ....*....|....*....|....*....|
gi 2181837017  81 KATEKAKPSVTRDKKAARGSTRAFHPLAKE 110
Cdd:pfam03634 104 NSARKKGQNMKSKKSKGSSKLSASRSLAKE 133
TCP2 PLN03106
Protein TCP2; Provisional
 1-34 1.04e-03

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 36.98  E-value: 1.04e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKL 34
Cdd:PLN03106   99 AIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL 132
 
Name Accession Description Interval E-value
TCP pfam03634
TCP family transcription factor; This is a family of TCP plant transcription factors. TCP ...
 1-110 5.23e-22

TCP family transcription factor; This is a family of TCP plant transcription factors. TCP proteins were named after the first characterized members (TB1, CYC and PCFs) and they are involved in multiple developmental control pathways. This region contains a DNA binding basic-Helix-Loop-Helix (bHLP) structure.


Pssm-ID: 460998  Cd Length: 152  Bit Score: 84.32  E-value: 5.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKLkgagTGSSNVPNTATSNSSSTTSECEVLSGIIDEASFSLPMENNIK 80
Cdd:pfam03634  28 ARKFFDLQDMLGFDKASKTIEWLLQQAKPAIKEL----TGTGTIPANFSSLSISLRSSGESVSGIDEQAVALLNFHSTNQ 103

                          90       100       110
                  ....*....|....*....|....*....|
gi 2181837017  81 KATEKAKPSVTRDKKAARGSTRAFHPLAKE 110
Cdd:pfam03634 104 NSARKKGQNMKSKKSKGSSKLSASRSLAKE 133
TCP2 PLN03106
Protein TCP2; Provisional
 1-34 1.04e-03

Protein TCP2; Provisional


Pssm-ID: 215579 [Multi-domain]  Cd Length: 447  Bit Score: 36.98  E-value: 1.04e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKL 34
Cdd:PLN03106   99 AIQFYDLQDRLGYDQPSKAVEWLIKAAEDSISEL 132
TCP24 PLN03105
transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional
 1-34 7.08e-03

transcription factor TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); Provisional


Pssm-ID: 178652  Cd Length: 324  Bit Score: 34.46  E-value: 7.08e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2181837017   1 ARKFFGLQDMLGSDKASKTVHWLLTKSKTAIKKL 34
Cdd:PLN03105   75 AIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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