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Conserved domains on  [gi|2161959095|gb|UGC41816|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Heleioporus inornatus]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 16-226 4.73e-101

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00068:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 458  Bit Score: 300.29  E-value: 4.73e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00068  245 RISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSS 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00068  325 ALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITA 404

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00068  405 AYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
 
Name Accession Description Interval E-value
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 16-226 4.73e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 300.29  E-value: 4.73e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00068  245 RISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSS 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00068  325 ALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITA 404

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00068  405 AYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 23-226 2.27e-39

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 141.37  E-value: 2.27e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  23 ESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLAN 102
Cdd:COG1008   269 EASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVG 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 103 TAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLF 182
Cdd:COG1008   349 VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2161959095 183 wssQREY---LPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:COG1008   429 ---QRVFfgpLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLL 472
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 28-226 4.98e-33

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 123.90  E-value: 4.98e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:TIGR01972 268 FAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYER 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 108 TNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAtsySLYLFWSSQR 187
Cdd:TIGR01972 348 AHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLA---AAYMLTLYKR 424

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2161959095 188 EYL----PSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:TIGR01972 425 VFFgelsNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLL 467
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-168 3.76e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.70  E-value: 3.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095   1 ILAGTLLKLGGYGLLRTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSV 80
Cdd:pfam00361 119 LLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGI 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  81 SGAMLLMISHGLVSSALFCLA-NTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKW 159
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278


                  ....*....
gi 2161959095 160 APYSILLAG 168
Cdd:pfam00361 279 SWIFLVLAG 287
 
Name Accession Description Interval E-value
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 16-226 4.73e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 300.29  E-value: 4.73e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00068  245 RISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSS 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00068  325 ALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITA 404

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00068  405 AYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELIS 455
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 16-225 4.44e-87

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 264.75  E-value: 4.44e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00124  245 RITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSS 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00124  325 MLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITA 404

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:MTH00124  405 SYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELI 454
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 28-225 2.07e-76

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 237.48  E-value: 2.07e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:MTH00110  257 MAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYER 336

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 108 TNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLFWSSQR 187
Cdd:MTH00110  337 IHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQR 416

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2161959095 188 EYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:MTH00110  417 GKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKII 454
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-225 1.22e-68

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 217.52  E-value: 1.22e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095   1 ILAGTLLKLGGYGLLRTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSV 80
Cdd:MTH00127  231 VLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGF 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  81 SGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWA 160
Cdd:MTH00127  311 TGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWS 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2161959095 161 PYSILLAGMSIMFATSYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:MTH00127  391 PWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELI 455
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 16-225 2.42e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 205.94  E-value: 2.42e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00206  241 RIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSS 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00206  321 ALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTA 400

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:MTH00206  401 IYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 29-226 5.33e-59

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 192.50  E-value: 5.33e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:MTH00044  260 SFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERS 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 109 NSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLFWSSQRE 188
Cdd:MTH00044  340 GTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSG 419

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2161959095 189 YLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00044  420 SFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 16-226 7.06e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 165.71  E-value: 7.06e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSS 95
Cdd:MTH00163  233 RVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSS 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  96 ALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:MTH00163  313 GLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSA 392

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2161959095 176 SYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00163  393 AYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 32-226 9.80e-49

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 164.63  E-value: 9.80e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:MTH00150  220 LISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSR 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLFWSSQREYLP 191
Cdd:MTH00150  300 SLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSS 379

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2161959095 192 SHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00150  380 SFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLF 414
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-226 6.19e-43

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 150.28  E-value: 6.19e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095   1 ILAGTLLKLGGYGLLRTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSV 80
Cdd:MTH00014  224 ILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGW 303

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  81 SGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWA 160
Cdd:MTH00014  304 QGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSS 383

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2161959095 161 PYSILLAGMSIMFATSYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00014  384 LSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLIT 449
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-226 5.18e-40

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 142.43  E-value: 5.18e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095   1 ILAGTLLKLGGYGLLRTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSV 80
Cdd:MTH00205  222 ILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGM 301

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  81 SGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWA 160
Cdd:MTH00205  302 NGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSS 381

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2161959095 161 PYSILLAGMSIMFATSYSLYLFWSSQREYLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:MTH00205  382 KISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 23-226 2.27e-39

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 141.37  E-value: 2.27e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  23 ESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLAN 102
Cdd:COG1008   269 EASAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVG 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 103 TAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLF 182
Cdd:COG1008   349 VLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMY 428

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2161959095 183 wssQREY---LPSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:COG1008   429 ---QRVFfgpLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLL 472
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 23-226 2.66e-34

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 127.63  E-value: 2.66e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  23 ESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLAN 102
Cdd:PRK05846  271 DASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVG 350

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 103 TAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLF 182
Cdd:PRK05846  351 VLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLY 430

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2161959095 183 wssQREYL------PSHMKSLSPtmtREHILMALHILPIIMLTLKPELIF 226
Cdd:PRK05846  431 ---QRVMFgpvkneVAKLKDLNG---RELLILLPLVALLLLLGVYPKPLL 474
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 28-226 4.98e-33

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 123.90  E-value: 4.98e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:TIGR01972 268 FAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYER 347

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 108 TNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAtsySLYLFWSSQR 187
Cdd:TIGR01972 348 AHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLA---AAYMLTLYKR 424

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2161959095 188 EYL----PSHMKSLSPTMTREHILMALHILPIIMLTLKPELIF 226
Cdd:TIGR01972 425 VFFgelsNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLL 467
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 29-225 6.63e-28

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 110.15  E-value: 6.63e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:MTH00204  275 APLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERH 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 109 NSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLFWSSQRE 188
Cdd:MTH00204  355 HTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFG 434

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2161959095 189 YLPSHMKSLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:MTH00204  435 GGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 29-182 3.39e-27

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 107.83  E-value: 3.39e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:MTH00217  272 SPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERH 351

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2161959095 109 NSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLF 182
Cdd:MTH00217  352 HTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLY 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-168 3.76e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 99.70  E-value: 3.76e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095   1 ILAGTLLKLGGYGLLRTSSMIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSV 80
Cdd:pfam00361 119 LLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGI 198

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  81 SGAMLLMISHGLVSSALFCLA-NTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKW 159
Cdd:pfam00361 199 QAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAA 278


                  ....*....
gi 2161959095 160 APYSILLAG 168
Cdd:pfam00361 279 SWIFLVLAG 287
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 28-224 1.96e-23

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 97.41  E-value: 1.96e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:PRK12561  250 FAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYER 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 108 TNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYS-------ILLAGMSIMFATSYSL- 179
Cdd:PRK12561  330 THTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVFLGITSSDVYSstfrtitILLAAVGLILTPIYLLs 409

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2161959095 180 ---YLFWSSQREYLPSHmKSLSPTMTREHILMALHILPIIMLTLKPEL 224
Cdd:PRK12561  410 mlrRVFYGPRSELLPAL-AVVEDAKPRELFIALSLLVPIIGIGFYPKL 456
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 28-181 4.98e-23

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 96.53  E-value: 4.98e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:MTH00226  295 LAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDR 374

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2161959095 108 TNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYL 181
Cdd:MTH00226  375 HHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYF 448
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 22-184 6.84e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 84.04  E-value: 6.84e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  22 HESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLA 101
Cdd:COG0651   265 ADPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAA 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 102 NTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYL 181
Cdd:COG0651   345 GAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                  ...
gi 2161959095 182 FWS 184
Cdd:COG0651   425 IFG 427
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 29-225 7.24e-18

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 81.68  E-value: 7.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:PRK02546  279 APLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRT 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 109 NSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYS-------ILLAGMSIMFATSYSLYL 181
Cdd:PRK02546  359 HTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVGFATSDAYTlpfrvvvVFLAAVGVILTPIYLLSM 438

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2161959095 182 ----FWSSQREYLPSHMKsLSPTMTREHILMALHILPIIMLTLKPELI 225
Cdd:PRK02546  439 lreiFFGPENKELVSHEK-LVDAEPREVFIIACLLVPIIGIGLYPKLV 485
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 32-174 6.02e-17

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 78.82  E-value: 6.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK06458  284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTR 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYK---WAPYSILLAGMSIMFA 174
Cdd:PRK06458  364 DINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLArgpLLIAILLLLLLTLAFA 429
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
28-166 7.37e-17

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 78.59  E-value: 7.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  28 MAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYER 107
Cdd:PRK06473  270 LAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKK 349

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959095 108 TNSRTMIVLQG---SQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILL 166
Cdd:PRK06473  350 TGSRDVDVLRGllnPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLL 411
ndhD CHL00011
NADH dehydrogenase subunit 4
 29-165 1.22e-15

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 74.98  E-value: 1.22e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:CHL00011  277 SPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRI 356

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2161959095 109 NSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSIL 165
Cdd:CHL00011  357 RLVYLDEMGGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIVFFGIITSQKYLLM 413
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
20-166 1.04e-13

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 69.36  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  20 MIHESFHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFC 99
Cdd:PRK07363  262 LFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFH 341

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 100 LANTAYERTNSRTMIVLQG--SQII-LPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILL 166
Cdd:PRK07363  342 LVGIVERKVGTRDLDVLNGlmNPIRgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLL 411
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 33-185 1.34e-13

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 68.78  E-value: 1.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  33 IIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRT 112
Cdd:MTH00094  217 IIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRL 296

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959095 113 MIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFATSYSLYLFWSS 185
Cdd:MTH00094  297 IYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSS 369
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-213 2.23e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 65.38  E-value: 2.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK12667  298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTR 377

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLI---LLSVYKWAPYSILLAGMSI-MFATSYSLYLFWSSQR 187
Cdd:PRK12667  378 DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLfnaLLESGFYLPALVLLIASAIsLVGYFRAWYSLFFGKP 457

                         170       180
                  ....*....|....*....|....*.
gi 2161959095 188 EYLPSHMKSLSPTMTREHILMALHIL 213
Cdd:PRK12667  458 KSGEEVEHKESPSMSVVILVLALAVL 483
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 32-171 3.68e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 64.94  E-value: 3.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK12647  262 LPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTR 341

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSI 171
Cdd:PRK12647  342 DITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAV 401
PRK12650 PRK12650
DUF4040 family protein;
32-147 1.36e-10

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 60.44  E-value: 1.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTR 354

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFI 147
Cdd:PRK12650  355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFV 390
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-210 4.56e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 4.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  27 PMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYE 106
Cdd:PRK08375  269 GLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEV 348

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 107 RTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLIL---LSVYKWAPYSILLAGmSIMFATSYS---LY 180
Cdd:PRK08375  349 TYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVvgaVEAGQWLVLAVLLAS-SLLALLYFLriwYR 427

                         170       180       190
                  ....*....|....*....|....*....|
gi 2161959095 181 LFWSSQREYLPSHMKSLSPTMTREHILMAL 210
Cdd:PRK08375  428 AFFGPPPPGSEAPKQEAPLGMLAPSLALAL 457
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-220 4.74e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 55.59  E-value: 4.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK06589  283 LIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKED 362

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVY--KWAPYSILLAGMSIMFATSYSLYLFWSSQREY 189
Cdd:PRK06589  363 QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASeqNQPWLSIIVMLVVIASSILSALYLLKILSSIY 442

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2161959095 190 LPSHMKSLSPTMTrehiLMALHILPIIMLTL 220
Cdd:PRK06589  443 KPSLSENSFITKS----LPYLMQISVITCCC 469
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 16-166 1.63e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.99  E-value: 1.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  16 RTSSMIHES--FHPMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLV 93
Cdd:PRK08676  258 RLSALLRQSgaAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2161959095  94 SSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILL 166
Cdd:PRK08676  338 KSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLA 410
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-168 9.02e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 48.96  E-value: 9.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  27 PMAPPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYE 106
Cdd:PRK12662  277 PFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISY 356

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2161959095 107 RTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYK---WAPYSILLAG 168
Cdd:PRK12662  357 HFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaWIGLVVLLVG 421
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 32-177 1.44e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 48.22  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK08377  276 VIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGT 355

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSV----YKWApySILLAGMSIMFATSY 177
Cdd:PRK08377  356 EIEKFEGLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGlsagYTWP--VALVLGASVVEAVYY 423
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-108 4.69e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 46.48  E-value: 4.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  29 APPLIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVkspwsvsgAMLLMISHGLVSSALFCLANTAYERT 108
Cdd:PRK07234  245 DLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRN 316
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 50-200 4.98e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.50  E-value: 4.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  50 QTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAW 129
Cdd:PRK12665  294 QSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVL 373

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2161959095 130 WLLATMLNMALPPSTNFIGELLIL---LSVYKWAPYSILLAGMSIMFATSYSL-----YLFWSSQREYLPSHMKSLSPT 200
Cdd:PRK12665  374 FFVPALNLGGIPPFSGFIGKVALLeagAEDGTWLAWALVAGGVVTSLLTLYAVarvwtKAFWRAREDAPEGHLADARPA 452
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 32-202 8.34e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.91  E-value: 8.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKspwSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:COG1009   278 VAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAPYSILLAGMSI---MFATSYSLYL----FWS 184
Cdd:COG1009   355 DIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALlgaFLTAFYSFRLfflvFFG 434

                         170
                  ....*....|....*...
gi 2161959095 185 SQREYLPSHMKSLSPTMT 202
Cdd:COG1009   435 KPRPKTPKHPHESPWLMT 452
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
32-152 2.83e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 44.25  E-value: 2.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSR 111
Cdd:PRK06277  269 LIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTS 348

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLI 152
Cdd:PRK06277  349 NLRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLML 389
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-152 4.83e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.83  E-value: 4.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  34 IFAMFG---VVASALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNS 110
Cdd:PRK08668  274 ILAWLGnisIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGT 353

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2161959095 111 RTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLI 152
Cdd:PRK08668  354 TKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLI 395
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 49-183 1.20e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.60  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  49 RQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAA 128
Cdd:PRK12644  287 RQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAV 366

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2161959095 129 WWLLATMLNMALPPSTNFIG-----ELLILLSVYKWAPySILLAGMSI--MFATSYSLYLFW 183
Cdd:PRK12644  367 VAALAAASMAGLPPLLGFVAkeaalEAVLHDGALGPAG-PVVLAGIVLgsILTVAYSLRFLW 427
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 49-158 1.50e-04

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.03  E-value: 1.50e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  49 RQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALF-CLANTAYERTNSRTMIVLQG-SQIILPLA 126
Cdd:COG1007   289 AQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGlARRSPLLA 368

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2161959095 127 AAwwLLATMLNMA-LPPSTNFIGELLILLSVYK 158
Cdd:COG1007   369 LA--MTIFLLSLAgIPPTAGFFGKFYVFSAAVE 399
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
22-98 7.79e-04

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 39.80  E-value: 7.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  22 HESFHPMAPPLIIFAMFGVVAS----ALLCSRQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSAL 97
Cdd:PRK05777  259 VVAFGGLSEDWQQVLAIIAIASmlvgNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGA 338


                  .
gi 2161959095  98 F 98
Cdd:PRK05777  339 F 339
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 33-158 9.02e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.71  E-value: 9.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  33 IIFAMFGVVASAllcsRQTDLKSLIAFSSVSHMGLV-----------VAATMVKSPWSVSGAMLLMISHGLVSSALFCLA 101
Cdd:PRK08667  278 SISALLGVIYAL----KEHDLKGLLAYSSIENIGIIlmgiglyvifgVYGLDTLALLALGGALFHSLNHALFKSLLFLTA 353

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2161959095 102 NTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYK 158
Cdd:PRK08667  354 GSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQ 410
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 50-179 1.12e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 39.79  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  50 QTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSALFCLANTAYERTNSRTMIVLQGSQIILPLAAAW 129
Cdd:PRK12648  292 QHDLKGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFKASLFMAAGIIDHETGTRDMRRLSGLRRLMPITATL 371

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 130 WLLATmLNMALPPSTN-------FIGELL---ILLSVYKWAPYSILLAGmsiMFATSYSL 179
Cdd:PRK12648  372 AMVAA-AAMAGVPLLNgflskemFFAETLdthLLGSLDWLLPVAATLAG---AFSVAYSL 427
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 32-226 1.60e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 38.80  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFAMFGVVASALLCSRQTDLKSLIAFSSVSHMGLVVAAtmvkSPWSVSGAMLLMISHGLVSSALFCLANTayerTNSR 111
Cdd:MTH00200  154 LLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSG----LVYSPNLALLYLLLYVIITLTVFLLLNL----LNST 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095 112 TMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLIL--LSVYKWAPYSILLAGMSIMFATSYsLYLFWSSQREY 189
Cdd:MTH00200  226 KINSLSSSKTKNPILSMLLGLTLLSLGGLPPLTGFFPKWLILqeLSKQGLFIYATILLLGSLLSLFFY-LRLSYLTLLTL 304

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2161959095 190 LPSHMKSLSPTMTREH---ILMALHILPIIMLTLKPELIF 226
Cdd:MTH00200  305 SPNQINMMSSWRTKSNsnlLVGLLLLLSILGLPLTPQLLF 344
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 17-213 5.87e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 37.24  E-value: 5.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  17 TSSMIHESFHPMAPPLIIFAMFGVVAsallcsrQTDLKSLIAFSSVSHMGLVVAATMVKSPWSVSGAMLLMISHGLVSSA 96
Cdd:PRK07691  270 DTSFTHYLILILALLTIIFGVIGAVA-------YFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAA 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  97 LFCLANTAYERTNSrTMIVLQGSQIILPLAAAWWLLATMLNMA-LPPSTNFIGELLILLSVYKWAPYSILLAGMSIMFAT 175
Cdd:PRK07691  343 LFLLIGIMIKITGT-TDLKKMGGLIKRYPVLGWMFFIAALSLAgIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLV 421

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2161959095 176 SYS-----LYLFWSSQREYLPSHMKSLSPTMTREHILMALHIL 213
Cdd:PRK07691  422 LYSvikifLKGFWGEPKGYDLNNKVPVKKLLLPAVVLVAITIL 464
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 32-161 6.43e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 37.00  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2161959095  32 LIIFA---MFGVVASALLcsrQTDLKSLIAFSSVSH-----MGLVVAATMVKSPWSVS-------GAMLLMISHGLVSSA 96
Cdd:PRK08376  290 IIILGcltMFVGVAMAVV---QKDVKRLLAYHSVSQigymlLGLGVGLAALGDPAMASygeialaGGIYHIVNHALYKAL 366

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2161959095  97 LFCLANTAYERTNSRTMIVLQGSQIILPLAAAWWLLATMLNMALPPSTNFIGELLILLSVYKWAP 161
Cdd:PRK08376  367 LFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNP 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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