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Conserved domains on  [gi|2127022697|gb|UDZ61634|]
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ribosomal protein S16, partial (chloroplast) [Limnophyton obtusifolium]

Protein Classification

30S ribosomal protein S16( domain architecture ID 10000001)

30S ribosomal protein S16 is a ribosomal protein that may have a cation-dependent endonuclease activity

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-67 1.87e-40

ribosomal protein S16


:

Pssm-ID: 176950  Cd Length: 82  Bit Score: 127.45  E-value: 1.87e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2127022697  1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILNFLEKGAQPTETVHDILKKAEFFKEFQ 67
Cdd:CHL00005  15 AVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELS 81
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-67 1.87e-40

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 127.45  E-value: 1.87e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2127022697  1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILNFLEKGAQPTETVHDILKKAEFFKEFQ 67
Cdd:CHL00005  15 AVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELS 81
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-63 2.48e-25

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 89.22  E-value: 2.48e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2127022697  1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQ--TYLNVPAILNFLEKGAQPTETVHDILKKAEFF 63
Cdd:TIGR00002 14 PFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 3-60 1.06e-20

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 77.39  E-value: 1.06e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127022697  3 YRIVAIDVRSRREGRDLRKVGFYDPIKN--QTYLNVPAILNFLEKGAQPTETVHDILKKA 60
Cdd:COG0228   17 YRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
2-50 5.28e-15

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 62.39  E-value: 5.28e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2127022697  2 VYRIVAIDVRSRREGRDLRKVGFYDPIKN----QTYLNVPAILNFLEKGAQPT 50
Cdd:pfam00886  9 FYRIVVADSRSPRDGRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
 
Name Accession Description Interval E-value
rps16 CHL00005
ribosomal protein S16
 1-67 1.87e-40

ribosomal protein S16


Pssm-ID: 176950  Cd Length: 82  Bit Score: 127.45  E-value: 1.87e-40
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2127022697  1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPAILNFLEKGAQPTETVHDILKKAEFFKEFQ 67
Cdd:CHL00005  15 AVYRIVAIDVRSRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPTETVYDILKKAEVFKELS 81
S16 TIGR00002
ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein ...
 1-63 2.48e-25

ribosomal protein S16; This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272848  Cd Length: 78  Bit Score: 89.22  E-value: 2.48e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2127022697  1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKNQ--TYLNVPAILNFLEKGAQPTETVHDILKKAEFF 63
Cdd:TIGR00002 14 PFYRIVVADSRSRRDGRYIEELGFYNPITKEdlVKLNVERIKHWLSKGAQPTDTVRKLLKKAGVF 78
RpsP COG0228
Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 ...
 3-60 1.06e-20

Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S16 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439998  Cd Length: 76  Bit Score: 77.39  E-value: 1.06e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127022697  3 YRIVAIDVRSRREGRDLRKVGFYDPIKN--QTYLNVPAILNFLEKGAQPTETVHDILKKA 60
Cdd:COG0228   17 YRIVVADSRSPRDGRFIERIGFYNPLTNpaRIKLDEERAQYWLSKGAQPTDTVAKLLKKA 76
Ribosomal_S16 pfam00886
Ribosomal protein S16;
2-50 5.28e-15

Ribosomal protein S16;


Pssm-ID: 459981  Cd Length: 61  Bit Score: 62.39  E-value: 5.28e-15
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 2127022697  2 VYRIVAIDVRSRREGRDLRKVGFYDPIKN----QTYLNVPAILNFLEKGAQPT 50
Cdd:pfam00886  9 FYRIVVADSRSPRDGRFIEELGTYNPLAEpgepRVKLDEERIKYWLGVGAQPT 61
rpsP PRK14521
30S ribosomal protein S16; Provisional
 1-79 9.91e-12

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 57.09  E-value: 9.91e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2127022697   1 AVYRIVAIDVRSRREGRDLRKVGFYDPIKN--QTYLNVPAILNFLEKGAQPTETVHDIL--KKAEFFKEFQVNQKK---- 72
Cdd:PRK14521   16 AFYWIVAADSRAPRDGKFIEKIGTYNPNTNpaTVDLNFDRAVYWLMNGAQPTDTARNILsyEGVLLKKHLLGGVAKgaft 95


                  ....*..
gi 2127022697  73 QSQKESK 79
Cdd:PRK14521   96 EAQAEAK 102
rpsP PRK14520
30S ribosomal protein S16; Provisional
 3-59 3.40e-08

30S ribosomal protein S16; Provisional


Pssm-ID: 184724 [Multi-domain]  Cd Length: 155  Bit Score: 47.38  E-value: 3.40e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2127022697   3 YRIVAIDVRSRREGRDLRKVGFYDPIKNQTYLNVPA--ILNFLEKGAQPTETVHDILKK 59
Cdd:PRK14520   18 YRIVVADSRTKRDGRAIEEIGRYHPKEEPSLIEIDSerAQYWLSVGAQPTEPVLALLKI 76
rpsP PRK14522
30S ribosomal protein S16; Provisional
 2-59 1.84e-06

30S ribosomal protein S16; Provisional


Pssm-ID: 172988 [Multi-domain]  Cd Length: 116  Bit Score: 42.29  E-value: 1.84e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2127022697   2 VYRIVAIDVRSRREGRDLRKVGFYDPIKNQTY-LNVPAILNFLEKGAQPTETVHDILKK 59
Cdd:PRK14522   17 VYRLVLADVESPRDGKYIELLGWYDPHSEQNYqLKSERIFYWLNQGAELTEKAGALVKQ 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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