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NADH-plastoquinone oxidoreductase subunit 7 (chloroplast) [Leptodermis gracilis]
Protein Classification
NADH dehydrogenase subunit 7 ( domain architecture ID 10000011 )
NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain
List of domain hits
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 894.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 1 M N V T ATRKDLM R VNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T V P ATRKDLM I VNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 161 GGVAADLPYGWIDKCLDFCDYFLTGV T EYQKLITRNPIFL K RVEGVG VVA GEEA L NWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGV A EYQKLITRNPIFL E RVEGVG IIG GEEA I NWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 241 CY Y E L DWEVQWQKEGDSLARYLVRIGEM I ES V KIIQQALEGIPGGPYENLE I RRFDR V KD P EWNDFEYRFISKKPSP A FE 320
Cdd:CHL00017 241 CY D E F DWEVQWQKEGDSLARYLVRIGEM T ES I KIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2125179822 321 LSKQELYVRVEAPKGELGIFLIGD PG VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 894.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 1 M N V T ATRKDLM R VNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T V P ATRKDLM I VNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 161 GGVAADLPYGWIDKCLDFCDYFLTGV T EYQKLITRNPIFL K RVEGVG VVA GEEA L NWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGV A EYQKLITRNPIFL E RVEGVG IIG GEEA I NWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 241 CY Y E L DWEVQWQKEGDSLARYLVRIGEM I ES V KIIQQALEGIPGGPYENLE I RRFDR V KD P EWNDFEYRFISKKPSP A FE 320
Cdd:CHL00017 241 CY D E F DWEVQWQKEGDSLARYLVRIGEM T ES I KIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2125179822 321 LSKQELYVRVEAPKGELGIFLIGD PG VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 583.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 7 RKDL M RV NMGPQHPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 167 LP Y G WID K CLD F C DYF LTGVT EY QK L I T R N P IF LK R VE GVGV VAG E E A LNW G LS GP M LRASG IQW DLRK VDH Y EC Y Y ELD 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVGV LSA E D A IAL G VT GP V LRASG VDY DLRK DEP Y SG Y D ELD 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 247 WE V QWQK EGD SLA RYLVR IG EM IE S VK II Q Q A L EGI P G GP YENLEIRRFDRV K DPEWNDF E YRFIS - K KPSPA F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2125179822 326 L Y VR VE A P K GELG IF L IG D P G VF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
9.29e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 446.40
E-value: 9.29e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 9 DL M RV N M GPQHPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF M IL N L GPQHPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 169 YG W IDKCLD F CDY F LTGVTE Y QK L ITR N P I FLK R VE GVGVV AGEE AL N WGL S GPMLR A SGI Q WD L RK VDH YE C Y Y E L D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVGVV SAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 249 V QWQKE GD SLA RYL V R IG EM I ES V KII Q Q A LE GI P G GP YE n LEIRRFDRVKDPEWNDFEYRF I S -- K KPSPA F ELSKQ E L 326
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ES I KII E Q C LE KM P P GP IK - ADNPKLAPPPKERMLTSMEAL I H hf K LVTEG F RVPAG E V 319
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2125179822 327 YV RV E A PKGELG IFL I G D P G VF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 320 YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.40e-140
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 400.99
E-value: 1.40e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGVA A DLP Y G WID K CLD F C DYF LTGVT EY QK L I TRN P IF LK R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 205 GVGV VAG E E AL NW G LS GPMLRASG IQ WDLRK VDH Y EC Y Y ELD WE V QWQK EGD SLA RYLVR IG EM IE S VK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVGV LSA E D AL AL G VT GPMLRASG VP WDLRK DEP Y SG Y D ELD FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 285 GP Y -- ENLE I RRFDRVKDPE - WNDFEYR F is K KPSPA F ELSKQ E L YV R VEAPKGELG IF L IG D P G VF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 2125179822 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
Name
Accession
Description
Interval
E-value
ndhH
CHL00017 NADH dehydrogenase subunit 7
1-393
0e+00
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 894.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 1 M N V T ATRKDLM R VNMGP Q HPSMHGVLRLIVTLDGEDV V DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017 1 M T V P ATRKDLM I VNMGP H HPSMHGVLRLIVTLDGEDV I DCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 81 ITVN G PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN F FRI 160
Cdd:CHL00017 81 ITVN A PEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHN Y FRI 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 161 GGVAADLPYGWIDKCLDFCDYFLTGV T EYQKLITRNPIFL K RVEGVG VVA GEEA L NWGLSGPMLRASGIQWDLRKVDHYE 240
Cdd:CHL00017 161 GGVAADLPYGWIDKCLDFCDYFLTGV A EYQKLITRNPIFL E RVEGVG IIG GEEA I NWGLSGPMLRASGIQWDLRKVDHYE 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 241 CY Y E L DWEVQWQKEGDSLARYLVRIGEM I ES V KIIQQALEGIPGGPYENLE I RRFDR V KD P EWNDFEYRFISKKPSP A FE 320
Cdd:CHL00017 241 CY D E F DWEVQWQKEGDSLARYLVRIGEM T ES I KIIQQALEGIPGGPYENLE A RRFDR E KD S EWNDFEYRFISKKPSP T FE 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2125179822 321 LSKQELYVRVEAPKGELGIFLIGD PG VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
Cdd:CHL00017 321 LSKQELYVRVEAPKGELGIFLIGD DS VFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
1-393
0e+00
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 726.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 1 M NVTA TR KDL M RV N M GP Q HPSMHGVLRLIVTLDGEDVVDCEP IL GYLHRGMEKIAENRT IIQ Y L PYV T RWDY L A T MF T EA 80
Cdd:PRK07415 1 M AQLE TR TEP M VL N F GP H HPSMHGVLRLIVTLDGEDVVDCEP VI GYLHRGMEKIAENRT NVM Y V PYV S RWDY A A G MF N EA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 81 ITVN G PE Q L G NI Q VPKRASYIRVIMLEL S RIA S HLLWLGPF M AD I GAQTPFFYIFRERE L IYDL F EAATG M R MM - H N F FR 159
Cdd:PRK07415 81 ITVN A PE K L A NI P VPKRASYIRVIMLEL N RIA N HLLWLGPF L AD V GAQTPFFYIFRERE M IYDL W EAATG Q R LI n N N Y FR 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 160 IGGVAADLPYGW ID KCLDFCDYF LTGVT EY Q KLIT R NPIF LK R V EG V G VVAG EEA L NWGLSGPMLRASG IQ WDLRKVDHY 239
Cdd:PRK07415 161 IGGVAADLPYGW LE KCLDFCDYF GPKID EY E KLIT N NPIF RR R I EG L G TISR EEA I NWGLSGPMLRASG VK WDLRKVDHY 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 240 ECY YEL DW E V Q W QK EGD S LARY L VRI G EM I ESVKII Q QA LE GIPGGPYENLE IR R FDRV K DP EWN D F E Y RFIS KK PS P A F 319
Cdd:PRK07415 241 ECY DDF DW D V A W ET EGD C LARY R VRI E EM R ESVKII R QA CK GIPGGPYENLE AK R MAEG K KS EWN G F D Y QYVA KK VA P T F 320
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2125179822 320 ELSKQ ELYVR V E AP KGELGIF LI G DPG V F PWRWKIR PPG F I NLQILP Q L V K RM K L ADIM T ILGSID I IMG E VDR 393
Cdd:PRK07415 321 KIPNG ELYVR L E SG KGELGIF IQ G NND V T PWRWKIR AAD F N NLQILP H L L K GA K V ADIM A ILGSID V IMG S VDR 394
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
7-393
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 583.96
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 7 RKDL M RV NMGPQHPS M HGVLRL IVT LDGE D VVD CE P IL GYLHRG M EK I AENRT II Q YL PY VT R W DYL AT M FT E AIT V NGP 86
Cdd:COG0649 3 ETEE M VL NMGPQHPS T HGVLRL VLE LDGE T VVD AD P HI GYLHRG F EK L AENRT YT Q II PY TD R L DYL SP M NN E LAY V LAV 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 87 E Q L GN I Q VP K RA S YIRVI ML EL S RIASHLLWLG PFMA D I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M HN F FRIGGV AA D 166
Cdd:COG0649 83 E K L LG I E VP E RA Q YIRVI LA EL N RIASHLLWLG TYAL D L GA M TPF L Y A FRERE K I L DLFE EV TG A RM T HN Y FRIGGV RR D 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 167 LP Y G WID K CLD F C DYF LTGVT EY QK L I T R N P IF LK R VE GVGV VAG E E A LNW G LS GP M LRASG IQW DLRK VDH Y EC Y Y ELD 246
Cdd:COG0649 163 LP D G FLE K VRE F L DYF PKRLD EY ED L L T G N R IF KA R TK GVGV LSA E D A IAL G VT GP V LRASG VDY DLRK DEP Y SG Y D ELD 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 247 WE V QWQK EGD SLA RYLVR IG EM IE S VK II Q Q A L EGI P G GP YENLEIRRFDRV K DPEWNDF E YRFIS - K KPSPA F ELSKQ E 325
Cdd:COG0649 243 FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E GP VMAKDPKIAPPP K EEMKTSM E ALIHH f K LVTEG F KVPAG E 322
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2125179822 326 L Y VR VE A P K GELG IF L IG D P G VF P W R W KIR P P G F I NLQ I LP QLV K RMK LAD IMT ILGS I DI IM GEVDR 393
Cdd:COG0649 323 V Y AA VE S P R GELG FY L VS D G G TK P Y R V KIR S P S F A NLQ A LP EML K GHM LAD VVA ILGS L DI VL GEVDR 390
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
6-393
1.31e-172
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 486.97
E-value: 1.31e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 6 TRKDLMRV N M GPQHP SM HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AE N RT II Q YL PY VT R W DY LAT M FT E AITVNG 85
Cdd:PRK06075 2 AEIRNYTL N F GPQHP AA HGVLRLI LE LDGE V VV RAD P HI GYLHRG T EK L AE Y RT YL Q AI PY FD R L DY VSP M NN E HAYCLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 86 P E Q L GN I Q VP K RA S YIRV IM LEL S RI A SHLLWLG PFMA D I GA Q T P F FYI FRERE LIY DL F EA A TG M RM M H NFF R I GGV AA 165
Cdd:PRK06075 82 V E K L LG I E VP E RA Q YIRV LF LEL N RI L SHLLWLG THAL D L GA M T V F LWG FRERE KLL DL Y EA V TG A RM H H AYI R P GGV RR 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 166 DLP Y G WIDKCL DF C DYF LTGVTE Y QK L I T R N P I FLK R VE GVGVV AG E E AL NW G LS GPMLRASG IQ WDLRK VDH YE C Y Y EL 245
Cdd:PRK06075 162 DLP D G LLEDIR DF L DYF PKRLDD Y ET L L T D N R I WKQ R LV GVGVV SK E R AL AL G FT GPMLRASG VA WDLRK SQP YE V Y D EL 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 246 D WE V QWQ K E GD SLA RYLVR IG EM IE S VK II Q Q A L E -- GI P G GP Y -- ENLE I --- R R FDRVKDP E wndf EYRFIS K KPSPA 318
Cdd:PRK06075 242 D FD V PVG K N GD CYD RYLVR VE EM RQ S LR II E Q C L D rl RP P P GP V mv DDPK I app A R LEMKTSM E ---- ALIHHF K LVTEG 317
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2125179822 319 F ELSKQ E L Y VR VE A PKGE L G IF L IG D P G VF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT I L GS I DI IM GEVDR 393
Cdd:PRK06075 318 F RVPAG E V Y AA VE S PKGE F G VY L VS D G G NK P Y R V KIR A P S F AH LQ A L DEMCRGHM LAD VVA I I GS L DI VF GEVDR 392
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
6-393
2.23e-157
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 447.23
E-value: 2.23e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 6 T R KDL M RV N M GPQHPS M HGV L RL IVTL DGE DV V DCE P IL GYLHRG M EK I AE NRTII Q YL PY VT R W DYL AT M FTEAITVNG 85
Cdd:PRK12322 2 L R TEE M LL N V GPQHPS T HGV F RL VLKI DGE II V EAT P VI GYLHRG T EK L AE SLQYT Q II PY TD R M DYL SA M TNNYVYCHA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 86 P E QLGNIQ VP K RA S Y I RVI ML EL S RIASHL L W L G PFMA DIGA QT PF F Y I FRERE L I YD L FEAAT G M R MMH N FF RIGGV AA 165
Cdd:PRK12322 82 V E TMMGLE VP E RA E Y L RVI AM EL G RIASHL V W W G TYLL DIGA VS PF L Y A FRERE M I IN L LNELC G A R LTF N YM RIGGV KW 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 166 D L P Y GWI D K CLD F CD Y FLTGVTE Y QK L I T R N P IFL K RV E GVG VVAG EEA LNWG LSG PM LR AS G IQ WDLRK VDH Y EC Y YEL 245
Cdd:PRK12322 162 D A P D GWI E K VKE F VP Y MREQLAG Y HD L V T G N E IFL N RV K GVG IYSA EEA ISYS LSG VN LR CT G VN WDLRK DEP Y SI Y DRF 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 246 D WEVQWQKE GD SLA RY LV R IG E MIE S V KII Q QA L E GI P - G GP Y enleirrfd RV K D P ewndfey RF I sk K PSPA felskq 324
Cdd:PRK12322 242 D FDIPVGSV GD CWD RY VC R MQ E IEQ S L KII E QA V E QF P k E GP V --------- LA K V P ------- KI I -- K APKG ------ 297
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2125179822 325 E L YVR V E A P K GE L G IFLIG D PGVF P W R W K I R P P G F I NLQILP Q L V K RMKL A DIMT ILGSIDI IM GEVD R 393
Cdd:PRK12322 298 E A YVR I E S P R GE I G CYIAS D GKKK P Y R L K F R R P S F Y NLQILP K L L K GENI A NLIA ILGSIDI VL GEVD G 366
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
9-393
9.29e-157
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 446.40
E-value: 9.29e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 9 DL M RV N M GPQHPS M HGVLRLI VT LDGE D VV DCE P IL GYLHRG M EK I AENRT II QY L PY VT R W DYL ATMFT E AITVNGP E Q 88
Cdd:TIGR01962 1 EF M IL N L GPQHPS T HGVLRLI LE LDGE Y VV RAD P HI GYLHRG T EK L AENRT YQ QY I PY TD R L DYL SPFSN E LAYCLAV E K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 89 L GN I Q VP K RA SY IRV IML EL S RI A SHLL WL G PFMA D I GA Q TPF F Y I FRERE L I Y DLFEA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:TIGR01962 81 L LG I E VP R RA QV IRV MLS EL N RI S SHLL FI G THAL D L GA M TPF L Y A FRERE K I L DLFEA I TG A RM HSAY FRIGGVA L DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 169 YG W IDKCLD F CDY F LTGVTE Y QK L ITR N P I FLK R VE GVGVV AGEE AL N WGL S GPMLR A SGI Q WD L RK VDH YE C Y Y E L D WE 248
Cdd:TIGR01962 161 EN W LEEIRE F LEQ F PKRLRD Y ET L LNE N R I WKQ R TQ GVGVV SAKD AL D WGL T GPMLR G SGI D WD I RK SEP YE G Y D E Y D FD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 249 V QWQKE GD SLA RYL V R IG EM I ES V KII Q Q A LE GI P G GP YE n LEIRRFDRVKDPEWNDFEYRF I S -- K KPSPA F ELSKQ E L 326
Cdd:TIGR01962 241 V PVGGN GD CYD RYL L R VL EM R ES I KII E Q C LE KM P P GP IK - ADNPKLAPPPKERMLTSMEAL I H hf K LVTEG F RVPAG E V 319
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2125179822 327 YV RV E A PKGELG IFL I G D P G VF P W R W KIR P P G F IN LQ I L PQLVKRMK LAD IMT ILGSID II MGEVDR 393
Cdd:TIGR01962 320 YV PI E S PKGELG FYI I S D G G TK P Y R L KIR A P S F AH LQ A L EAMCVGHY LAD LIA ILGSID PV MGEVDR 386
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393
1.40e-140
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 400.99
E-value: 1.40e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 125 I GA Q TPF F Y I FRERE L I Y DLFE AA TG M RM M H NF FR I GGVA A DLP Y G WID K CLD F C DYF LTGVT EY QK L I TRN P IF LK R VE 204
Cdd:pfam00346 1 L GA M TPF L Y A FRERE K I L DLFE RI TG A RM T H SY FR P GGVA R DLP E G FLE K IRE F L DYF PKRLD EY ED L L TRN R IF KD R TK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 205 GVGV VAG E E AL NW G LS GPMLRASG IQ WDLRK VDH Y EC Y Y ELD WE V QWQK EGD SLA RYLVR IG EM IE S VK II Q Q A L EGI P G 284
Cdd:pfam00346 81 GVGV LSA E D AL AL G VT GPMLRASG VP WDLRK DEP Y SG Y D ELD FD V PVGT EGD CYD RYLVR ME EM RQ S LR II R Q C L DKL P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 285 GP Y -- ENLE I RRFDRVKDPE - WNDFEYR F is K KPSPA F ELSKQ E L YV R VEAPKGELG IF L IG D P G VF P W R W KIR P P G F I N 361
Cdd:pfam00346 161 GP V ma DDPK I ALPPKEEMKT s MEALIHH F -- K LVTEG F RVPAG E V YV A VEAPKGELG FY L VS D G G TK P Y R V KIR A P S F A N 238
250 260 270
....*....|....*....|....*....|..
gi 2125179822 362 LQ I LP QLV K RMK LAD IMT I L GSIDI I MGEVDR 393
Cdd:pfam00346 239 LQ A LP EMC K GHM LAD VVA I I GSIDI V MGEVDR 270
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
8-393
7.06e-131
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 394.14
E-value: 7.06e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 8 KDLMRV N M GPQHP SM HG VL R LIVT LDGE DV VD CEPIL GY L HRG M EKI A E NRTII Q YL PY VT R W DYLA TMFTEAIT VN GP E 87
Cdd:PRK13292 402 EETLIL N L GPQHP GT HG II R FVLK LDGE EI VD MDSDI GY H HRG A EKI G E RQHWN Q FI PY TD R I DYLA GVQNNLAY VN SV E 481
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 88 Q L GN I Q VP K RA S YIRV IML EL S RIA S HL L WLG P F M AD I GA Q TP F FY I F RE RE L I Y D LF E AA TG M RM MHNF FRIGGVA A DL 167
Cdd:PRK13292 482 T L CG I E VP D RA I YIRV MLS EL F RIA N HL V WLG T F A AD V GA M TP V FY T F TD RE K I F D IV E MI TG G RM HPAW FRIGGVA E DL 561
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 168 P Y GW IDKCLD F CDY F LTGVT EY QK L I T R NPIF LK R VE GVGV VAGE EA LN WG L SGP M LRA S G IQ WDLRK VDH Y EC Y YEL D W 247
Cdd:PRK13292 562 P E GW KEAVEA F LRW F PGRLK EY ED L L T G NPIF KA R LK GVGV ITRD EA VE WG I SGP N LRA C G LA WDLRK KMP Y GG Y DRF D F 641
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 248 EV QWQKE GD SL ARYLVR IG EM IE S VK I IQ QA LE G I PGG PYENLEI R RFDRV K DPEWN D F E --- YR F ISKKPS PA fe LS K Q 324
Cdd:PRK13292 642 EV PTAEG GD CY ARYLVR ME EM RQ S LR I VR QA AA G M PGG RWISDDY R YVLPQ K RDTLK D I E sli HH F VNVTRG PA -- PP K G 719
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2125179822 325 E L Y VRV EAPKGE L G I F LIG D PGVFPW R WK IR P P G F INL Q I LP Q L VKRMKL AD IMT I L GSID IIMGEV DR 393
Cdd:PRK13292 720 E C Y AAI EAPKGE N G Y F VVS D GLNIAY R MR IR T P S F PHI Q A LP L L SRGWLV AD FLA I I GSID FVLADL DR 788
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
9-393
5.13e-117
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 351.92
E-value: 5.13e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 9 D L M RV N M GP Q HPS M HG VL R LIVT LDGE DV VDC E P IL GY L HRG M EK IA E NRTIIQ Y L PY VT R W DYL ATMFT E AIT V NGP E Q 88
Cdd:PRK11742 190 D F M FL N L GP N HPS A HG AF R IVLQ LDGE EI VDC V P DI GY H HRG A EK MG E RQSWHS Y I PY TD R I DYL GGCMN E MPY V LAV E K 269
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 89 L GN I Q VP K R ASY IRV IML EL S RI A SHLL WL G P F MA D I GA Q TP F F YI F RE R EL IYD LF EA A TG M RM MHNF FRIGGVA A DLP 168
Cdd:PRK11742 270 L AG I T VP D R VNV IRV MLS EL F RI N SHLL YI G T F IQ D V GA M TP V F FA F TD R QK IYD VI EA I TG F RM HPAW FRIGGVA H DLP 349
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 169 Y GW i D KC L - D F C D YFLTGVT EY Q K LIT RN P I FLK R VE GV GVVAGE EAL N WG LS G PM LRA S GI QW D L RK VDH Y EC Y YEL D W 247
Cdd:PRK11742 350 R GW - D RL L r E F L D WMPKRLD EY E K AAL RN S I LKG R TQ GV AAYNAK EAL E WG VT G AG LRA T GI DF D V RK ARP Y SG Y ENF D F 428
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 248 EV QWQKE GD SLA R YL V RIG EM IE S VK II Q Q A L EGI P G GP Y enleir RF D R ------ V K DPEWNDF E --- YR F ISKKPS P A 318
Cdd:PRK11742 429 EV PVGGN GD CYD R VM V KVE EM RQ S LR II E Q C L DNM P E GP F ------ KA D H plttpp P K ERTLQHI E tli TH F LQVSWG P V 502
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2125179822 319 fe LSKQ E LYVRV EA P KG ELGIF L IG D PGVFPW R WK IR P P G F IN LQ IL P QLVKRMKLA D IMTI LGSID II M GE VDR 393
Cdd:PRK11742 503 -- MPAN E SFQMI EA T KG INSYY L TS D GSTMSY R TR IR T P S F AH LQ QI P SVIRGSLVS D LIVY LGSID FV M SD VDR 575
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
8-385
3.62e-101
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 308.05
E-value: 3.62e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 8 KDLMRVNM GP Q H PSMHGVLRLIVTLD GE DVV D C E PI LGY L HRG M EK I AE N R TII Q Y L PYVT R ---------- WD Y latmf 77
Cdd:COG3261 120 EGVHEIPV GP V H AGLIEPGHFRFSVE GE RIL D L E IR LGY V HRG I EK L AE G R DYE Q A L YLAE R icgicsvaha LA Y ----- 194
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 78 TE A I tvngp E QLGN I Q VP K RA S Y I RVI M LEL S RI A SHLL W LG PFMA D I G AQ T P F FYIF R E RE LIY DL F EA A TG M R MMHNF 157
Cdd:COG3261 195 CQ A V ----- E KAAG I E VP P RA Q Y L RVI L LEL E RI H SHLL D LG ALAN D V G FE T L F MQCW R L RE RVL DL N EA L TG N R VLRGI 269
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 158 FRI GGV AA DL PYGWIDKC L DFC D YFLTG V T E YQK L ITRN P IF L K R VE G V GV VAG E E A LNW G LS GP ML RASG IQW D L R KVD 237
Cdd:COG3261 270 NVP GGV RR DL DPEQLKAI L ERL D ELEEE V K E LVD L FLND P SV L D R LV G T GV LSK E D A RDL G AV GP VA RASG VDR D V R RDH 349
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2125179822 238 H Y EC Y Y ELD WE V QWQK EGD SL AR Y LVR IG E MI ES VKI I Q QALE GI P G GP yenleirrfdr VKD P EWNDFEYRFI skkpsp 317
Cdd:COG3261 350 P Y AA Y D ELD FK V VTET EGD VY AR A LVR LE E IF ES LDL I R QALE KL P E GP ----------- IRV P VPGLPPDGEG ------ 412
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2125179822 318 afelskqel YV RVEAP K GEL GIFLIG D PGVFPW R W KIR P P G F I N LQI L PQLVKRMKL AD IMT I LG S I D 385
Cdd:COG3261 413 --------- LG RVEAP R GEL VHYVRT D GDGRLE R V KIR T P S F A N WPA L ELALRGNIV AD FPL I NK S F D 471
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
