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Conserved domains on  [gi|2096328401|gb|UAY53417|]
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carboxy terminal-processing peptidase [Ferruginibacter albus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CtpA COG0793
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ...
227-543 1.48e-80

C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440556 [Multi-domain]  Cd Length: 341  Bit Score: 259.80  E-value: 1.48e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGFEYSAGIDIDKNDKsHWEITRLVPGGAAWRSGeLHQGDILLKIKsgdhpEKSLDEMNDK 306
Cdd:COG0793    37 DPHSYYLDPEEYEDFQESTSGEFGGLGAELGEEDG-KVVVVSVIPGSPAEKAG-IKPGDIILAID-----GKSVAGLTLD 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 307 DVIALLEGTSDDKLLITVKTKDGKQ-KTIALTKEKIEDDEsiVQSFVIGDKtkIGYISLPDFYtdpdneqtdkaDGCAND 385
Cdd:COG0793   110 DAVKLLRGKAGTKVTLTIKRPGEGEpITVTLTRAEIKLPS--VEAKLLEGK--IGYIRIPSFG-----------ENTAEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 386 IAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESAS 465
Cdd:COG0793   175 FKRALKELKKQGAKGLILDLRNNPGGLLDEAVELADLFLPKGPIVYTRGRNGKVETYKATPGGALYDGPLVVLVNEGSAS 254
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2096328401 466 ASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGklterdnptdFVKVTDRKYYRIDGNTAQWKGVTPDIVLPD 543
Cdd:COG0793   255 ASEIFAGALQDYGRGVIVGTRTFGKGSVQTVFPLPDGG----------ALKLTTARYYTPSGRSIQGKGVEPDIEVPL 322
PRK11186 super family cl36004
carboxy terminal-processing peptidase;
42-697 1.53e-79

carboxy terminal-processing peptidase;


The actual alignment was detected with superfamily member PRK11186:

Pssm-ID: 236873 [Multi-domain]  Cd Length: 667  Bit Score: 266.76  E-value: 1.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  42 HYQPVQWNDSTSSRLFDHWLQTLDEAKLYFLQSDIKELSAYRYKLDDEL-AGKEWGFFDK-SISICRK--RLQQSDSisn 117
Cdd:PRK11186   54 HYRQFDLDDAFSAKIFDRYLNLLDYSHNVLLASDIDQFAKYKTQLDDELkSGKLDVAYDLyNLAQKRRfeRYQYALS--- 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 118 aLLAKPFDFTKPDVLHV--PFASYPSSIQEIMQRRQQVYKWDILYDILEDEEDSThpftIKppvnfnELQQKE----LES 191
Cdd:PRK11186  131 -LLDKPMDFTGNDTIELdrSKAPWPKDEAELNELWDQRVKYDALNLKLTGKTWPE----IK------ETLTKRynfaIKR 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 192 LRKSHAANVqdklepspyFENnladdYLDAIAWCYDPHTNYMNFSKKKEFETELS-GFEysaGID-IDKNDKSHWEITRL 269
Cdd:PRK11186  200 LTQTNSEDV---------FQL-----AMNAFAREIDPHTSYLSPRNAEQFNTEMNlSLE---GIGaVLQMDDDYTVINSL 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 270 VPGGAAWRSGELHQGDillKIKSGDHPEKsldEMND------KDVIALLEGT--SDDKLLITVKTKDGKQKTIALTKEKI 341
Cdd:PRK11186  263 VAGGPAAKSKKLSVGD---KIVGVGQDGK---PIVDvigwrlDDVVALIKGPkgSKVRLEILPAGKGTKTRIVTLTRDKI 336
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 342 EDDESIVQSFVIG-DKTKIGYISLPDFYTdpdneqtdkadGCANDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLA 420
Cdd:PRK11186  337 RLEDRAVKMSVKTvGGEKVGVLDIPGFYV-----------GLTDDVKKQLQKLEKQNVSGIIIDLRGNGGGALTEAVSLS 405
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 421 GIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQ------ 494
Cdd:PRK11186  406 GLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGRALIVGEPTFGKGTVQqhrsln 485
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 495 IVIPMDttgklterDNPTDFVKVTDRKYYRIDGNTAQWKGVTPDIVLPDFSIPDKYKEKGQLTALLPDNNKAGIYQPWPT 574
Cdd:PRK11186  486 RIYDQM--------LRPLGSVQYTIQKFYRINGGSTQRKGVTPDIIFPTGIEPTETGESFEDNALPWDSIPAATYVKSGD 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 575 I--PVAQLQASSTARVNKDLYFSLVKklQNLYITKSSGEENIplqwasyFAYNEKEEEGTKEWDKKKDsaaspLKVSNNQ 652
Cdd:PRK11186  558 LtaLVPELLKKHNARIAKDPEFQYIN--EDIARYKAEKDKNI-------VSLNYAEREKENDEDDAKR-----LARLNER 623
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2096328401 653 FDVERIK-LKSetaqkvnnsyIDRIAD-----DDYIRESYNIITDWITIKK 697
Cdd:PRK11186  624 FKREGKKpLKS----------LDDLPKdyeepDPYLDETVNIALDLAKLEK 664
 
Name Accession Description Interval E-value
CtpA COG0793
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ...
227-543 1.48e-80

C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440556 [Multi-domain]  Cd Length: 341  Bit Score: 259.80  E-value: 1.48e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGFEYSAGIDIDKNDKsHWEITRLVPGGAAWRSGeLHQGDILLKIKsgdhpEKSLDEMNDK 306
Cdd:COG0793    37 DPHSYYLDPEEYEDFQESTSGEFGGLGAELGEEDG-KVVVVSVIPGSPAEKAG-IKPGDIILAID-----GKSVAGLTLD 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 307 DVIALLEGTSDDKLLITVKTKDGKQ-KTIALTKEKIEDDEsiVQSFVIGDKtkIGYISLPDFYtdpdneqtdkaDGCAND 385
Cdd:COG0793   110 DAVKLLRGKAGTKVTLTIKRPGEGEpITVTLTRAEIKLPS--VEAKLLEGK--IGYIRIPSFG-----------ENTAEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 386 IAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESAS 465
Cdd:COG0793   175 FKRALKELKKQGAKGLILDLRNNPGGLLDEAVELADLFLPKGPIVYTRGRNGKVETYKATPGGALYDGPLVVLVNEGSAS 254
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2096328401 466 ASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGklterdnptdFVKVTDRKYYRIDGNTAQWKGVTPDIVLPD 543
Cdd:COG0793   255 ASEIFAGALQDYGRGVIVGTRTFGKGSVQTVFPLPDGG----------ALKLTTARYYTPSGRSIQGKGVEPDIEVPL 322
PRK11186 PRK11186
carboxy terminal-processing peptidase;
42-697 1.53e-79

carboxy terminal-processing peptidase;


Pssm-ID: 236873 [Multi-domain]  Cd Length: 667  Bit Score: 266.76  E-value: 1.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  42 HYQPVQWNDSTSSRLFDHWLQTLDEAKLYFLQSDIKELSAYRYKLDDEL-AGKEWGFFDK-SISICRK--RLQQSDSisn 117
Cdd:PRK11186   54 HYRQFDLDDAFSAKIFDRYLNLLDYSHNVLLASDIDQFAKYKTQLDDELkSGKLDVAYDLyNLAQKRRfeRYQYALS--- 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 118 aLLAKPFDFTKPDVLHV--PFASYPSSIQEIMQRRQQVYKWDILYDILEDEEDSThpftIKppvnfnELQQKE----LES 191
Cdd:PRK11186  131 -LLDKPMDFTGNDTIELdrSKAPWPKDEAELNELWDQRVKYDALNLKLTGKTWPE----IK------ETLTKRynfaIKR 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 192 LRKSHAANVqdklepspyFENnladdYLDAIAWCYDPHTNYMNFSKKKEFETELS-GFEysaGID-IDKNDKSHWEITRL 269
Cdd:PRK11186  200 LTQTNSEDV---------FQL-----AMNAFAREIDPHTSYLSPRNAEQFNTEMNlSLE---GIGaVLQMDDDYTVINSL 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 270 VPGGAAWRSGELHQGDillKIKSGDHPEKsldEMND------KDVIALLEGT--SDDKLLITVKTKDGKQKTIALTKEKI 341
Cdd:PRK11186  263 VAGGPAAKSKKLSVGD---KIVGVGQDGK---PIVDvigwrlDDVVALIKGPkgSKVRLEILPAGKGTKTRIVTLTRDKI 336
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 342 EDDESIVQSFVIG-DKTKIGYISLPDFYTdpdneqtdkadGCANDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLA 420
Cdd:PRK11186  337 RLEDRAVKMSVKTvGGEKVGVLDIPGFYV-----------GLTDDVKKQLQKLEKQNVSGIIIDLRGNGGGALTEAVSLS 405
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 421 GIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQ------ 494
Cdd:PRK11186  406 GLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGRALIVGEPTFGKGTVQqhrsln 485
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 495 IVIPMDttgklterDNPTDFVKVTDRKYYRIDGNTAQWKGVTPDIVLPDFSIPDKYKEKGQLTALLPDNNKAGIYQPWPT 574
Cdd:PRK11186  486 RIYDQM--------LRPLGSVQYTIQKFYRINGGSTQRKGVTPDIIFPTGIEPTETGESFEDNALPWDSIPAATYVKSGD 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 575 I--PVAQLQASSTARVNKDLYFSLVKklQNLYITKSSGEENIplqwasyFAYNEKEEEGTKEWDKKKDsaaspLKVSNNQ 652
Cdd:PRK11186  558 LtaLVPELLKKHNARIAKDPEFQYIN--EDIARYKAEKDKNI-------VSLNYAEREKENDEDDAKR-----LARLNER 623
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2096328401 653 FDVERIK-LKSetaqkvnnsyIDRIAD-----DDYIRESYNIITDWITIKK 697
Cdd:PRK11186  624 FKREGKKpLKS----------LDDLPKdyeepDPYLDETVNIALDLAKLEK 664
prc TIGR00225
C-terminal peptidase (prc); A C-terminal peptidase with different substrates in different ...
227-562 1.47e-61

C-terminal peptidase (prc); A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]


Pssm-ID: 272970 [Multi-domain]  Cd Length: 334  Bit Score: 209.14  E-value: 1.47e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGfEYSA-GIDIDKNDKsHWEITRLVPGGAAWRSGeLHQGDILLKIKSgdhpeKSLDEMND 305
Cdd:TIGR00225  28 DPYTRYLSPETAKSFSETTSG-SLEGiGIQVGMDDG-KIVIVSPFEGSPAEKAG-IKPGDKIIKING-----KSVAGMSL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 306 KDVIALLEGTSDDKLLITV-KTKDGKQKTIALTKEKIEDdESIVQSFVIGDKTKIGYISLPDFYTdpdneqtdkadGCAN 384
Cdd:TIGR00225 100 DDAVALIRGKKGTKVSLEIlRAGKSKPLSFTLKRDRIEL-ETVKASVKKVGGHSVGYIRISSFSE-----------HTAE 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 385 DIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDpNRGTIYNDPLVILINSESA 464
Cdd:TIGR00225 168 DVAKALDKLEKKNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKA-NGRQKYNLPLVVLVNRGSA 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 465 SASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGKlterdnptdfVKVTDRKYYRIDGNTAQWKGVTPDIVLPDF 544
Cdd:TIGR00225 247 SASEILAGALQDNGRATIVGEKTFGKGTVQQVRPLNDGSG----------IKVTIAKYYTPNGGSIHKKGIEPDIVIEQP 316
                         330
                  ....*....|....*...
gi 2096328401 545 SIPDKYKEKGQLTALLPD 562
Cdd:TIGR00225 317 DYSKELEEKFELNALPED 334
Peptidase_S41_CPP cd07560
C-terminal processing peptidase; serine protease family S41; The C-terminal processing ...
357-542 6.05e-57

C-terminal processing peptidase; serine protease family S41; The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. In E. coli, it is involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). In the plant chloroplast, the enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II, allowing the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.


Pssm-ID: 143476 [Multi-domain]  Cd Length: 211  Bit Score: 192.24  E-value: 6.05e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 357 TKIGYISLPDFYtdpdneqtdkaDGCANDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKT 436
Cdd:cd07560    48 TPIGYIRITSFS-----------ENTAEELKKALKELKKQGMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRN 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 437 GKTFFMKDPNrGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGKLterdnptdfvK 516
Cdd:cd07560   117 GKREAYASDD-GGLYDGPLVVLVNGGSASASEIVAGALQDNGRAVLVGERTFGKGSVQTVFPLSDGSAL----------K 185
                         170       180
                  ....*....|....*....|....*.
gi 2096328401 517 VTDRKYYRIDGNTAQWKGVTPDIVLP 542
Cdd:cd07560   186 LTTAKYYTPSGRSIQKKGIEPDIEVP 211
Peptidase_S41 pfam03572
Peptidase family S41;
358-541 3.27e-47

Peptidase family S41;


Pssm-ID: 460977  Cd Length: 165  Bit Score: 164.32  E-value: 3.27e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 358 KIGYISLPDFytdpdNEQTDKadgcanDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTG 437
Cdd:pfam03572   1 KIGYIRIPSF-----SEKTAK------ELAEALKELKKQGVKGLILDLRGNPGGLLSAAVEIASLFLPDGTIVSTRGRDG 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 438 --KTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMdttgklterdNPTDFV 515
Cdd:pfam03572  70 skEVYFAAGKADEVLWKGPLVVLVNEGSASASEIFAGALQDNGRATLVGERTFGKGTVQTVYPL----------PDGSAL 139
                         170       180
                  ....*....|....*....|....*.
gi 2096328401 516 KVTDRKYYRIDGNTAQWKGVTPDIVL 541
Cdd:pfam03572 140 KLTIAKYYTPDGRSIEGKGIEPDIEV 165
TSPc smart00245
tail specific protease; tail specific protease
329-542 1.83e-42

tail specific protease; tail specific protease


Pssm-ID: 214582  Cd Length: 192  Bit Score: 152.02  E-value: 1.83e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  329 GKQKTIALTKEKIEDDesiVQSFVIGDKTK--IGYISLPDFytdpdNEQTdkadgcANDIAKEIIKLKKDSICGLILDLR 406
Cdd:smart00245   1 SKERTIALIRDKIKIE---TLEGNVGYLRFgfIGYIRIPEF-----SEHT------SNLVEKAWKKLEKTNVEGLILDLR 66
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  407 YNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNT 486
Cdd:smart00245  67 NNPGGLLSAAIDVSSLFLDKGVIVYTVYRRTGELWTYPANLGRKYSKPLVVLVNKGTASASEIFAGALKDLGRATIVGER 146
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2096328401  487 SYGKGTAQIVIPMdttgklterdNPTDFVKVTDRKYYRIDGNTAQWKGVTPDIVLP 542
Cdd:smart00245 147 TFGKGLVQQTVPL----------GDGSGLKLTVAKYYTPSGKSIEKKGVEPDIQVP 192
TSP_NTD pfam17804
Tail specific protease N-terminal domain; The N-terminal domain of tail specific proteases has ...
36-233 1.96e-31

Tail specific protease N-terminal domain; The N-terminal domain of tail specific proteases has a novel fold composed of 10 alpha helices.


Pssm-ID: 436058  Cd Length: 188  Bit Score: 121.17  E-value: 1.96e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  36 RFLEMNHYQPVQWNDSTSSRLFDHWLQTLDEAKLYFLQSDIKELSAYRYKLDDELAGKEWGFFDKSISICRKRLQQSDSI 115
Cdd:pfam17804   3 QLLERYHYSPKKLDDELSSRVFDRYLKDLDPNKLYFLQSDIDEFEKYRTKLDDALRAGDLDFAFEIYNRYQKRLEERLEY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 116 SNALLAKPFDFTKPDVLHVPF--ASYPSSIQEIMQRRQQVYKWDILYDILEDEEDSThpftikPPVNFNELQQKELESLR 193
Cdd:pfam17804  83 ILELLDKPFDFSSDETIETDRekAPWAKTEAELDELWRKRLKNEILSNLKLSGKDKE------IKKSLETLEKRYENQLR 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2096328401 194 KSHAANVQDklepspYFENnladdYLDAIAWCYDPHTNYM 233
Cdd:pfam17804 157 RLYQTKSED------VFEL-----YLNAFTSSFDPHTSYF 185
PLN00049 PLN00049
carboxyl-terminal processing protease; Provisional
227-547 4.98e-29

carboxyl-terminal processing protease; Provisional


Pssm-ID: 177681 [Multi-domain]  Cd Length: 389  Bit Score: 119.84  E-value: 4.98e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGFEYSAGIDIDKNDKSHWEITRLV-----PGGAAWRSGeLHQGDILLKIKSgdhpeKSLD 301
Cdd:PLN00049   62 DPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVvvapaPGGPAARAG-IRPGDVILAIDG-----TSTE 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 302 EMNDKDVIALLEGTSDDKLLITVKtKDGKQKTIALTKEKIeddeSIV--------QSFVIGDKTKIGYISLPDFytdpdN 373
Cdd:PLN00049  136 GLSLYEAADRLQGPEGSSVELTLR-RGPETRLVTLTREKV----SLNpvksrlceVPGPGAGSPKIGYIKLTTF-----N 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 374 EQTDKAdgcandIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTG-KTFFMKDPNRGTIYN 452
Cdd:PLN00049  206 QNASSA------VKEAIETLRANGVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGvRDIYDADGSSAIATS 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 453 DPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPM-DTTGklterdnptdfVKVTDRKYYRIDGNTAQ 531
Cdd:PLN00049  280 EPLAVLVNKGTASASEILAGALKDNKRAVVLGEPTFGKGLIQSVFELsDGSG-----------LAVTVARYQTPAGTDID 348
                         330
                  ....*....|....*.
gi 2096328401 532 WKGVTPDIVLPDfSIP 547
Cdd:PLN00049  349 KVGITPDHPLPE-SLP 363
 
Name Accession Description Interval E-value
CtpA COG0793
C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, ...
227-543 1.48e-80

C-terminal processing protease CtpA/Prc, contains a PDZ domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440556 [Multi-domain]  Cd Length: 341  Bit Score: 259.80  E-value: 1.48e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGFEYSAGIDIDKNDKsHWEITRLVPGGAAWRSGeLHQGDILLKIKsgdhpEKSLDEMNDK 306
Cdd:COG0793    37 DPHSYYLDPEEYEDFQESTSGEFGGLGAELGEEDG-KVVVVSVIPGSPAEKAG-IKPGDIILAID-----GKSVAGLTLD 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 307 DVIALLEGTSDDKLLITVKTKDGKQ-KTIALTKEKIEDDEsiVQSFVIGDKtkIGYISLPDFYtdpdneqtdkaDGCAND 385
Cdd:COG0793   110 DAVKLLRGKAGTKVTLTIKRPGEGEpITVTLTRAEIKLPS--VEAKLLEGK--IGYIRIPSFG-----------ENTAEE 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 386 IAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESAS 465
Cdd:COG0793   175 FKRALKELKKQGAKGLILDLRNNPGGLLDEAVELADLFLPKGPIVYTRGRNGKVETYKATPGGALYDGPLVVLVNEGSAS 254
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2096328401 466 ASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGklterdnptdFVKVTDRKYYRIDGNTAQWKGVTPDIVLPD 543
Cdd:COG0793   255 ASEIFAGALQDYGRGVIVGTRTFGKGSVQTVFPLPDGG----------ALKLTTARYYTPSGRSIQGKGVEPDIEVPL 322
PRK11186 PRK11186
carboxy terminal-processing peptidase;
42-697 1.53e-79

carboxy terminal-processing peptidase;


Pssm-ID: 236873 [Multi-domain]  Cd Length: 667  Bit Score: 266.76  E-value: 1.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  42 HYQPVQWNDSTSSRLFDHWLQTLDEAKLYFLQSDIKELSAYRYKLDDEL-AGKEWGFFDK-SISICRK--RLQQSDSisn 117
Cdd:PRK11186   54 HYRQFDLDDAFSAKIFDRYLNLLDYSHNVLLASDIDQFAKYKTQLDDELkSGKLDVAYDLyNLAQKRRfeRYQYALS--- 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 118 aLLAKPFDFTKPDVLHV--PFASYPSSIQEIMQRRQQVYKWDILYDILEDEEDSThpftIKppvnfnELQQKE----LES 191
Cdd:PRK11186  131 -LLDKPMDFTGNDTIELdrSKAPWPKDEAELNELWDQRVKYDALNLKLTGKTWPE----IK------ETLTKRynfaIKR 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 192 LRKSHAANVqdklepspyFENnladdYLDAIAWCYDPHTNYMNFSKKKEFETELS-GFEysaGID-IDKNDKSHWEITRL 269
Cdd:PRK11186  200 LTQTNSEDV---------FQL-----AMNAFAREIDPHTSYLSPRNAEQFNTEMNlSLE---GIGaVLQMDDDYTVINSL 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 270 VPGGAAWRSGELHQGDillKIKSGDHPEKsldEMND------KDVIALLEGT--SDDKLLITVKTKDGKQKTIALTKEKI 341
Cdd:PRK11186  263 VAGGPAAKSKKLSVGD---KIVGVGQDGK---PIVDvigwrlDDVVALIKGPkgSKVRLEILPAGKGTKTRIVTLTRDKI 336
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 342 EDDESIVQSFVIG-DKTKIGYISLPDFYTdpdneqtdkadGCANDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLA 420
Cdd:PRK11186  337 RLEDRAVKMSVKTvGGEKVGVLDIPGFYV-----------GLTDDVKKQLQKLEKQNVSGIIIDLRGNGGGALTEAVSLS 405
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 421 GIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQ------ 494
Cdd:PRK11186  406 GLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGRALIVGEPTFGKGTVQqhrsln 485
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 495 IVIPMDttgklterDNPTDFVKVTDRKYYRIDGNTAQWKGVTPDIVLPDFSIPDKYKEKGQLTALLPDNNKAGIYQPWPT 574
Cdd:PRK11186  486 RIYDQM--------LRPLGSVQYTIQKFYRINGGSTQRKGVTPDIIFPTGIEPTETGESFEDNALPWDSIPAATYVKSGD 557
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 575 I--PVAQLQASSTARVNKDLYFSLVKklQNLYITKSSGEENIplqwasyFAYNEKEEEGTKEWDKKKDsaaspLKVSNNQ 652
Cdd:PRK11186  558 LtaLVPELLKKHNARIAKDPEFQYIN--EDIARYKAEKDKNI-------VSLNYAEREKENDEDDAKR-----LARLNER 623
                         650       660       670       680       690
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2096328401 653 FDVERIK-LKSetaqkvnnsyIDRIAD-----DDYIRESYNIITDWITIKK 697
Cdd:PRK11186  624 FKREGKKpLKS----------LDDLPKdyeepDPYLDETVNIALDLAKLEK 664
prc TIGR00225
C-terminal peptidase (prc); A C-terminal peptidase with different substrates in different ...
227-562 1.47e-61

C-terminal peptidase (prc); A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database. [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]


Pssm-ID: 272970 [Multi-domain]  Cd Length: 334  Bit Score: 209.14  E-value: 1.47e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGfEYSA-GIDIDKNDKsHWEITRLVPGGAAWRSGeLHQGDILLKIKSgdhpeKSLDEMND 305
Cdd:TIGR00225  28 DPYTRYLSPETAKSFSETTSG-SLEGiGIQVGMDDG-KIVIVSPFEGSPAEKAG-IKPGDKIIKING-----KSVAGMSL 99
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 306 KDVIALLEGTSDDKLLITV-KTKDGKQKTIALTKEKIEDdESIVQSFVIGDKTKIGYISLPDFYTdpdneqtdkadGCAN 384
Cdd:TIGR00225 100 DDAVALIRGKKGTKVSLEIlRAGKSKPLSFTLKRDRIEL-ETVKASVKKVGGHSVGYIRISSFSE-----------HTAE 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 385 DIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDpNRGTIYNDPLVILINSESA 464
Cdd:TIGR00225 168 DVAKALDKLEKKNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKA-NGRQKYNLPLVVLVNRGSA 246
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 465 SASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGKlterdnptdfVKVTDRKYYRIDGNTAQWKGVTPDIVLPDF 544
Cdd:TIGR00225 247 SASEILAGALQDNGRATIVGEKTFGKGTVQQVRPLNDGSG----------IKVTIAKYYTPNGGSIHKKGIEPDIVIEQP 316
                         330
                  ....*....|....*...
gi 2096328401 545 SIPDKYKEKGQLTALLPD 562
Cdd:TIGR00225 317 DYSKELEEKFELNALPED 334
Peptidase_S41_CPP cd07560
C-terminal processing peptidase; serine protease family S41; The C-terminal processing ...
357-542 6.05e-57

C-terminal processing peptidase; serine protease family S41; The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. In E. coli, it is involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). In the plant chloroplast, the enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II, allowing the light-driven assembly of the tetranuclear manganese cluster, which is responsible for photosynthetic water oxidation.


Pssm-ID: 143476 [Multi-domain]  Cd Length: 211  Bit Score: 192.24  E-value: 6.05e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 357 TKIGYISLPDFYtdpdneqtdkaDGCANDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKT 436
Cdd:cd07560    48 TPIGYIRITSFS-----------ENTAEELKKALKELKKQGMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRN 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 437 GKTFFMKDPNrGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGKLterdnptdfvK 516
Cdd:cd07560   117 GKREAYASDD-GGLYDGPLVVLVNGGSASASEIVAGALQDNGRAVLVGERTFGKGSVQTVFPLSDGSAL----------K 185
                         170       180
                  ....*....|....*....|....*.
gi 2096328401 517 VTDRKYYRIDGNTAQWKGVTPDIVLP 542
Cdd:cd07560   186 LTTAKYYTPSGRSIQKKGIEPDIEVP 211
Peptidase_S41 pfam03572
Peptidase family S41;
358-541 3.27e-47

Peptidase family S41;


Pssm-ID: 460977  Cd Length: 165  Bit Score: 164.32  E-value: 3.27e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 358 KIGYISLPDFytdpdNEQTDKadgcanDIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTG 437
Cdd:pfam03572   1 KIGYIRIPSF-----SEKTAK------ELAEALKELKKQGVKGLILDLRGNPGGLLSAAVEIASLFLPDGTIVSTRGRDG 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 438 --KTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMdttgklterdNPTDFV 515
Cdd:pfam03572  70 skEVYFAAGKADEVLWKGPLVVLVNEGSASASEIFAGALQDNGRATLVGERTFGKGTVQTVYPL----------PDGSAL 139
                         170       180
                  ....*....|....*....|....*.
gi 2096328401 516 KVTDRKYYRIDGNTAQWKGVTPDIVL 541
Cdd:pfam03572 140 KLTIAKYYTPDGRSIEGKGIEPDIEV 165
Peptidase_S41 cd06567
C-terminal processing peptidase family S41; Peptidase family S41 (C-terminal processing ...
359-542 3.19e-46

C-terminal processing peptidase family S41; Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn protease (TRI) act as a carboxypeptidase, involved in the degradation of proteasomal products. CTPase homolog IRBP, secreted by photoreceptors into the interphotoreceptor matrix, having arisen in the early evolution of the vertebrate eye, promotes the release of all-trans retinol from photoreceptors and facilitates its delivery to the retinal pigment epithelium.


Pssm-ID: 143475 [Multi-domain]  Cd Length: 224  Bit Score: 163.62  E-value: 3.19e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 359 IGYISLPDFYtdpdneqtdkADGCANDIAKEIIKLKKDsICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTGK 438
Cdd:cd06567    61 IGYIRIPSFS----------AESTAEELREALAELKKG-VKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGG 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 439 TF-FMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGklterdnptdFVKV 517
Cdd:cd06567   130 NEtEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGALQDLGRATLVGERTFGKGSVQTVFPLLDGS----------ALKL 199
                         170       180
                  ....*....|....*....|....*
gi 2096328401 518 TDRKYYRIDGNTAQWKGVTPDIVLP 542
Cdd:cd06567   200 TTAKYYTPSGRSIEGKGVEPDIEVP 224
TSPc smart00245
tail specific protease; tail specific protease
329-542 1.83e-42

tail specific protease; tail specific protease


Pssm-ID: 214582  Cd Length: 192  Bit Score: 152.02  E-value: 1.83e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  329 GKQKTIALTKEKIEDDesiVQSFVIGDKTK--IGYISLPDFytdpdNEQTdkadgcANDIAKEIIKLKKDSICGLILDLR 406
Cdd:smart00245   1 SKERTIALIRDKIKIE---TLEGNVGYLRFgfIGYIRIPEF-----SEHT------SNLVEKAWKKLEKTNVEGLILDLR 66
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  407 YNGGGSVWEAVQLAGIFIDIGPICSMKDKTGKTFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNT 486
Cdd:smart00245  67 NNPGGLLSAAIDVSSLFLDKGVIVYTVYRRTGELWTYPANLGRKYSKPLVVLVNKGTASASEIFAGALKDLGRATIVGER 146
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2096328401  487 SYGKGTAQIVIPMdttgklterdNPTDFVKVTDRKYYRIDGNTAQWKGVTPDIVLP 542
Cdd:smart00245 147 TFGKGLVQQTVPL----------GDGSGLKLTVAKYYTPSGKSIEKKGVEPDIQVP 192
TSP_NTD pfam17804
Tail specific protease N-terminal domain; The N-terminal domain of tail specific proteases has ...
36-233 1.96e-31

Tail specific protease N-terminal domain; The N-terminal domain of tail specific proteases has a novel fold composed of 10 alpha helices.


Pssm-ID: 436058  Cd Length: 188  Bit Score: 121.17  E-value: 1.96e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401  36 RFLEMNHYQPVQWNDSTSSRLFDHWLQTLDEAKLYFLQSDIKELSAYRYKLDDELAGKEWGFFDKSISICRKRLQQSDSI 115
Cdd:pfam17804   3 QLLERYHYSPKKLDDELSSRVFDRYLKDLDPNKLYFLQSDIDEFEKYRTKLDDALRAGDLDFAFEIYNRYQKRLEERLEY 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 116 SNALLAKPFDFTKPDVLHVPF--ASYPSSIQEIMQRRQQVYKWDILYDILEDEEDSThpftikPPVNFNELQQKELESLR 193
Cdd:pfam17804  83 ILELLDKPFDFSSDETIETDRekAPWAKTEAELDELWRKRLKNEILSNLKLSGKDKE------IKKSLETLEKRYENQLR 156
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2096328401 194 KSHAANVQDklepspYFENnladdYLDAIAWCYDPHTNYM 233
Cdd:pfam17804 157 RLYQTKSED------VFEL-----YLNAFTSSFDPHTSYF 185
PLN00049 PLN00049
carboxyl-terminal processing protease; Provisional
227-547 4.98e-29

carboxyl-terminal processing protease; Provisional


Pssm-ID: 177681 [Multi-domain]  Cd Length: 389  Bit Score: 119.84  E-value: 4.98e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 227 DPHTNYMNFSKKKEFETELSGFEYSAGIDIDKNDKSHWEITRLV-----PGGAAWRSGeLHQGDILLKIKSgdhpeKSLD 301
Cdd:PLN00049   62 DPFTRFLEPEKFKSLRSGTKGAVTGVGLEVGYPTGSDGPPAGLVvvapaPGGPAARAG-IRPGDVILAIDG-----TSTE 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 302 EMNDKDVIALLEGTSDDKLLITVKtKDGKQKTIALTKEKIeddeSIV--------QSFVIGDKTKIGYISLPDFytdpdN 373
Cdd:PLN00049  136 GLSLYEAADRLQGPEGSSVELTLR-RGPETRLVTLTREKV----SLNpvksrlceVPGPGAGSPKIGYIKLTTF-----N 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 374 EQTDKAdgcandIAKEIIKLKKDSICGLILDLRYNGGGSVWEAVQLAGIFIDIGPICSMKDKTG-KTFFMKDPNRGTIYN 452
Cdd:PLN00049  206 QNASSA------VKEAIETLRANGVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGvRDIYDADGSSAIATS 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 453 DPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPM-DTTGklterdnptdfVKVTDRKYYRIDGNTAQ 531
Cdd:PLN00049  280 EPLAVLVNKGTASASEILAGALKDNKRAVVLGEPTFGKGLIQSVFELsDGSG-----------LAVTVARYQTPAGTDID 348
                         330
                  ....*....|....*.
gi 2096328401 532 WKGVTPDIVLPDfSIP 547
Cdd:PLN00049  349 KVGITPDHPLPE-SLP 363
Peptidase_S41_TRI cd07562
Tricorn protease; serine protease family S41; The tricorn protease (TRI), a member of the S41 ...
358-540 9.18e-16

Tricorn protease; serine protease family S41; The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.


Pssm-ID: 143478 [Multi-domain]  Cd Length: 266  Bit Score: 78.01  E-value: 9.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 358 KIGYISLPDFYTDPDNEQTDKADGcandiakeiiKLKKDsicGLILDLRYNGGGSVweavqlAGIFIDI-GPICSMKDKT 436
Cdd:cd07562    88 RIGYVHIPDMGDDGFAEFLRDLLA----------EVDKD---GLIIDVRFNGGGNV------ADLLLDFlSRRRYGYDIP 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 437 -GKTFFMKDPNRGtiYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGTAQIVIPMDTTGKLTerdnptdfv 515
Cdd:cd07562   149 rGGGKPVTYPSGR--WRGPVVVLVNEGSASDAEIFAYGFRALGLGPVVGTRTAGGVIISGRYRLPDGGSLT--------- 217
                         170       180
                  ....*....|....*....|....*
gi 2096328401 516 kVTDRKYYRIDGNTAQWKGVTPDIV 540
Cdd:cd07562   218 -VPEFGVYLPDGGPLENRGVAPDIE 241
Peptidase_S41_IRBP cd07563
Interphotoreceptor retinoid-binding protein; serine protease family S41; Interphotoreceptor ...
359-553 1.01e-15

Interphotoreceptor retinoid-binding protein; serine protease family S41; Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors and facilitates its delivery to the RPE. Conversely, IRBP can promote the release of 11-cis-retinal from the RPE, prevent its isomerization in the subretinal space, and transfer it to photoreceptors. In vivo evidence implicates IRBP as a retinoid transporter in the visual cycle, suggesting a critical role for IRBP in cone function essential for human vision. IRBP is a dominant autoimmune antigen in the eye; IRBP proteolysis analysis has proven a useful biomarker for autoimmune uveitis (AU) disorders, a major cause of blindness. This family also includes a chlamydia-secreted protein, designated chlamydia protease-like activity factor (CPAF), known to degrade host proteins, enabling Chlamydia to evade host defenses and replicate.


Pssm-ID: 143479 [Multi-domain]  Cd Length: 250  Bit Score: 77.33  E-value: 1.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 359 IGYISLPDFYtDPDNEQTDKAdgcANDIAKEIIKLKkdsicGLILDLRYNGGGSVWEAVQLAGIFIDIGP---ICSMKDK 435
Cdd:cd07563    65 IGYLRIDSFG-GFEIAAAEAL---LDEALDKLADTD-----ALIIDLRYNGGGSDSLVAYLASYFTDEDKpvhLYTIYKR 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 436 TGK-----TFFMKDPNRGTIYNDPLVILINSESASASELTSAALQDYHRALIVGNTSYGKGtaqivipmdttgklterdN 510
Cdd:cd07563   136 PGNtttelWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAYALKQLKRATVVGETTAGGA------------------S 197
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2096328401 511 PTDFVKVTDRKYYRIDGNTA-------QW--KGVTPDIVLPDFSIPDKYKEK 553
Cdd:cd07563   198 PVLPFPLPNGLYLTVPTSRSvdpitgtNWegVGVPPDIEVPATPGYDDALER 249
Peptidase_S41_CPP_like cd07561
C-terminal processing peptidase-like; serine protease family S41; Bacterial protease homologs ...
333-547 9.67e-15

C-terminal processing peptidase-like; serine protease family S41; Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.


Pssm-ID: 143477 [Multi-domain]  Cd Length: 256  Bit Score: 74.60  E-value: 9.67e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 333 TIALTKEKIEDDESIVQSfviGDKtKIGYISLPDFYTDPDNEQTDKADgcandiakeiiKLKKDSICGLILDLRYNGGGS 412
Cdd:cd07561    44 ESLLSEKDGKDRFSYIVD---GGK-KVGYLVYNSFTSGYDDELNQAFA-----------EFKAQGVTELVLDLRYNGGGL 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 413 VWEAVQLAGIfidIGPicsmKDKTGKTF-------FMKDPNRGTIYNDP------------LVILINSESASASELTSAA 473
Cdd:cd07561   109 VSSANLLASL---LAP----AVALGQVFatleyndKRSANNEDLLFSSKtlaggnslnlskVYVLTSGSTASASELVINS 181
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2096328401 474 LQDYHRALIVGNTSYGKGTAQIVIPMDTTGKLTERdnPTDFvkvtdrKYYRIDGNTAQWKGVTPDIVLPDFSIP 547
Cdd:cd07561   182 LKPYMDVVLIGETTYGKNVGSLTFEDDRKHKWALQ--PVVF------KVVNADGQGDYSNGLTPDIEVNEDSSN 247
cpPDZ_CPP-like cd06782
circularly permuted PDZ domain of C-terminal processing peptidase (CPP), a serine protease, ...
253-341 1.06e-07

circularly permuted PDZ domain of C-terminal processing peptidase (CPP), a serine protease, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain of CPP (also known as tail-specific protease, PRC protein, Protease Re, and Photosystem II D1 protein processing peptidase), and related domains. CPP belongs to the peptidase S41A family. It cleaves a C-terminal 11 residue peptide from the precursor form of penicillin-binding protein 3, and may have a role in protecting bacterium from thermal and osmotic stresses. In the plant chloroplast, the enzyme removes the C-terminal extension of the D1 polypeptide of photosystem II. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains and as well as those with circular permutations and domain swapping of beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2); arranged as A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F. This CPP-like PDZ domain is a circularly permuted PDZ domain which places beta-strand A on the C-terminus. Another permutation exists in the PDZ superfamily which places both beta-strands A and B on the C-terminus.


Pssm-ID: 467623 [Multi-domain]  Cd Length: 88  Bit Score: 49.79  E-value: 1.06e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 253 GIDIDKNDKSHWEITRLVPGGAAWRSGeLHQGDILLKIksgdhPEKSLDEMNDKDVIALLEGTSDDKLLITVKTKD-GKQ 331
Cdd:cd06782     5 GIEIGKDDDGYLVVVSPIPGGPAEKAG-IKPGDVIVAV-----DGESVRGMSLDEVVKLLRGPKGTKVKLTIRRGGeGEP 78
                          90
                  ....*....|
gi 2096328401 332 KTIALTKEKI 341
Cdd:cd06782    79 RDVTLTREKI 88
PDZ_canonical cd00136
canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs ...
266-325 4.46e-05

canonical PDZ domain; Canonical PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain. PDZ domains usually bind to short specific peptide sequences located at the C-terminal end of their partner proteins known as PDZ binding motifs. These domains can also interact with internal peptide motifs and certain lipids, and can take part in a head-to-tail oligomerization with other PDZ domains. The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. The canonical PDZ domain contains six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467153 [Multi-domain]  Cd Length: 81  Bit Score: 42.14  E-value: 4.46e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 266 ITRLVPGGAAWRSGELHQGDILLKIKsgdhpEKSLDEMNDKDVIALLEgTSDDKLLITVK 325
Cdd:cd00136    28 VSRVEPGGPAARDGRLRVGDRILEVN-----GVSLEGLTHEEAVELLK-SAGGEVTLTVR 81
PDZ_MPP5-like cd06798
PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related ...
258-315 5.20e-05

PDZ domain of membrane palmitoylated protein 5 (MPP5), Drosophila Stardust, and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain of MPP5, Drosophila Stardust, and related domains. MPP5 (also known as MAGUK p55 subfamily member 1, protein associated with Lin-7 1 or PALS1) and Drosophila Stardust are membrane-associated guanylate kinase (MAGUK)-like proteins that serve as signaling and scaffolding proteins, linking different proteins critical to the formation and maintenance of tight junctions (TJ) and apical-basal polarity. Apical-basal polarity determinants cluster in complexes; in particular, the Crumbs complex (Crb, MPP5, and PATJ) and the PAR/aPKC-complex (PAR-3, PAR-6, aPKC) determine the apical plasma membrane domain. Within the Crumbs complex, Crb is stabilized in the plasma membrane by MPP5, which in turn recruits PATJ and Lin-7 to the complex. MPP5 also links the Crumbs complex with the PAR/aPKC-complex. The Drosophila homolog of the Crumbs complex is the (CRB)-Stardust (Sdt)-Discs Lost (Dlt) complex. MPP5 also acts as an interaction partner for SARS-CoV envelope protein E, which results in delayed formation of TJs and dysregulation of cell polarity. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This MPP5-like family domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467259 [Multi-domain]  Cd Length: 79  Bit Score: 41.95  E-value: 5.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2096328401 258 KNDKSHWEITRLVPGGAAWRSGELHQGDILLKIKSGDHPEKSLDEMNdkDVIALLEGT 315
Cdd:cd06798    17 RNEGDSVIISRIVKGGAAEKSGLLHEGDEILEINGIEIRGKDVNEVC--DLLADMHGT 72
PDZ3_PTPN13_FRMPD2-like cd06695
PDZ domain 3 of protein tyrosine phosphatase non-receptor type 13 (PTPN13), FERM and PDZ ...
266-322 1.07e-04

PDZ domain 3 of protein tyrosine phosphatase non-receptor type 13 (PTPN13), FERM and PDZ domain-containing protein 2 (FRMPD2), and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 3 of PTPN13 [also known as Fas-associated protein-tyrosine phosphatase 1 (FAP-1), protein-tyrosine phosphatase 1E (PTP-E1), and protein-tyrosine phosphatase (PTPL1)], FRMPD2 (also known as PDZ domain-containing protein 4; PDZ domain-containing protein 5C), and related domains. PTPN13 regulates negative apoptotic signaling and mediates phosphoinositide 3-kinase (PI3K) signaling. PTPN13 has five PDZ domains. Proteins known to interact with PTPN13 PDZ domains include: PLEKHA1 and PLEKHA2 via PTPN13-PDZ domain 1, Fas receptor and thyroid receptor-interacting protein 6 via PTPN13-PDZ domain 2, nerve growth factor receptor and protein kinase N2 via PTPN13-PDZ domain 3, PDZ and LIM domain 4 (PDLIM4) via PTPN13-PDZ domains 2 and 4, and brain calpain-2 via PTPN13-PDZ domains 3, 4 and 5. Calpain-2-mediated PTPN13 fragments may be involved in abnormal tau aggregation and increased risk for Alzheimer's disease. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). FRMPD2 is localized in the basolateral membranes of polarized epithelial cells and is associated with tight junction formation and immune response; it contains 3 PDZ domains). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This PTPN13 family PDZ3 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467181 [Multi-domain]  Cd Length: 90  Bit Score: 41.48  E-value: 1.07e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2096328401 266 ITRLVPGGAAWRSGELHQGDILLKIKSgdhpeKSLDEMNDKDVIALLEGTSDD-KLLI 322
Cdd:cd06695    35 IKKLFPGQPAAESGLIQEGDVILAVNG-----EPLKGLSYQEVLSLLRGAPPEvTLLL 87
PDZ smart00228
Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF ...
266-328 5.37e-04

Domain present in PSD-95, Dlg, and ZO-1/2; Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.


Pssm-ID: 214570 [Multi-domain]  Cd Length: 85  Bit Score: 39.28  E-value: 5.37e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2096328401  266 ITRLVPGGAAWRSGeLHQGDILLKIKsgdhpEKSLDEMNDKDVIALLEGTSdDKLLITVKTKD 328
Cdd:smart00228  30 VSSVVPGSPAAKAG-LRVGDVILEVN-----GTSVEGLTHLEAVDLLKKAG-GKVTLTVLRGG 85
DegQ COG0265
Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational ...
266-337 1.34e-03

Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440035 [Multi-domain]  Cd Length: 274  Bit Score: 41.29  E-value: 1.34e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2096328401 266 ITRLVPGGAAWRSGeLHQGDILLKIksGDHPEKSLDemndkDVIALLEGTS-DDKLLITVKtKDGKQKTIALT 337
Cdd:COG0265   205 VARVEPGSPAAKAG-LRPGDVILAV--DGKPVTSAR-----DLQRLLASLKpGDTVTLTVL-RGGKELTVTVT 268
PDZ_MPP-like cd06726
PDZ domain of membrane palmitoylated proteins (MPPs), and related domains; PDZ (PSD-95 ...
253-318 1.74e-03

PDZ domain of membrane palmitoylated proteins (MPPs), and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain of MPP1-7 (also known as MAGUK p55 subfamily members 1-7), and related domains. MPPs comprise a subfamily of a larger group of multidomain proteins, namely, membrane-associated guanylate kinases (MAGUKs). MPPs form diverse protein complexes at the cell membranes, which are involved in a wide range of cellular processes, including establishing proper cell structure, polarity and cell adhesion. MPPs have only one PDZ domain. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This MPP1-like family domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467208 [Multi-domain]  Cd Length: 80  Bit Score: 37.63  E-value: 1.74e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2096328401 253 GIDIDKNDKSHWeITRLVPGGAAWRSGELHQGDILLKIKSGDHPEKSLDEmndkdVIALLEGTSDD 318
Cdd:cd06726    14 GATIKMEEDSVI-VARILHGGMAHRSGLLHVGDEILEINGIPVSGKTVDE-----LQKLLSSLSGS 73
PDZ_Par6-like cd06718
PDZ domain of partitioning defective 6 (Par6), Drosophila Rho GTPase-activating protein 100F ...
247-326 2.17e-03

PDZ domain of partitioning defective 6 (Par6), Drosophila Rho GTPase-activating protein 100F (RhoGAP100F), and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain of Par6 (also known as PAR6 or Par-6), RhoGAP100F, and related domains. Par6 is part of a conserved machinery that directs metazoan cell polarity, a process necessary for the function of diverse cell types. Par6 forms a cell polarity-regulatory complex with atypical protein kinase C (aPKC) and Par3. Par6 can also directly associate with PALS1 (proteins associated with Lin7, also known as Stardust) providing a link between the Par3/aPKC/Par6 complex and the PALS1-PATJ (protein-associated TJ) complex. Binding partners of the Par6-PDZ domain include Par3, PALS1/Stardust; leucine-rich repeat-containing protein netrin-G ligand-2 (NGL-2), human crumbs (CRB3) involve in the morphogenesis of the tight junctions in mammalian epithelial cells, and PAR-6 co-operates with the Par6 semi-CRIB domain to bind CDC42. CDC42 regulates the Par6 PDZ domain through an allosteric CRIB-PDZ transition. Drosophila RhoGAP100F, also known as synapse defective protein 1 homolog (syd-1 homolog), is a GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound form. The RhoGAP100F-PDZ domain binds the neurexin C terminus to control synapse formation at the Drosophila neuromuscular junction. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This Par6-like family domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467202 [Multi-domain]  Cd Length: 84  Bit Score: 37.55  E-value: 2.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 247 GFEYSAGIDIDKNDKSHweITRLVPGGAAWRSGELHQGDILLKIKSGDHPEKSLDEMNDKDVIallegtsDDKLLITVKT 326
Cdd:cd06718    14 GFYIRDGNGVERVPGIF--ISRLVLGSLADSTGLLAVGDEILEVNGVEVTGKSLDDVTDMMVA-------PTRLIITVKP 84
Tricorn_PDZ pfam14685
Tricorn protease PDZ domain; This domain is the PDZ domain of tricorn protease.
253-335 2.25e-03

Tricorn protease PDZ domain; This domain is the PDZ domain of tricorn protease.


Pssm-ID: 405386 [Multi-domain]  Cd Length: 88  Bit Score: 37.56  E-value: 2.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2096328401 253 GIDIdKNDKSHWEITRLVPgGAAWRSGE----------LHQGDILLKIksGDHPeksLDEmnDKDVIALLEGTSDDKLLI 322
Cdd:pfam14685   4 GADL-SRDGGRYRIAKIYP-GDSWDPEArsplaepgvdVRVGDCILAV--DGRP---VGP--VTGPYSLLVGKAGQEVEL 74
                          90
                  ....*....|...
gi 2096328401 323 TVKTKDGKQKTIA 335
Cdd:pfam14685  75 TVRRKDGDARRVT 87
PDZ_MPP1-like cd10830
PDZ domain of membrane palmitoylated protein1 (MPP1), and related domains; PDZ (PSD-95 ...
253-304 4.54e-03

PDZ domain of membrane palmitoylated protein1 (MPP1), and related domains; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain of MPP1, and related domains. MPP1 (also known as MAGUK p55 subfamily member 1, erythrocyte membrane protein p55, EMP55) is a membrane-associated guanylate kinase (MAGUK)-like protein which forms a complex with protein 4.1 and glycophorin C (GPC) at the cytoplasmic face of the plasma membrane; this complex is essential for cytoskeleton-membrane linkage in erythrocytes and many non-erythroid cells, and participates in the determination of membrane stability and cell shape. MPP1, by interacting with various scaffold proteins and cytoskeletal proteins in the postsynaptic density, also plays an important role in organizing synaptic and non-synaptic structures. MPP1 is also a component of the Crumbs protein complex in the mammalian retina and may link the Usher protein network and the Crumbs protein complex. The MPP1 PDZ domain binding partners include GPC, ABCC4, and CADM1/Necl-2/SynCAM1. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This MPP1-like family domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467266 [Multi-domain]  Cd Length: 81  Bit Score: 36.77  E-value: 4.54e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2096328401 253 GIDIDKNDKSHWEITRLVPGGAAWRSGELHQGDILLKI-------KSGDHPEKSLDEMN 304
Cdd:cd10830    14 GITLKLNEKQSCIVARILHGGMIHRQGSLHVGDEILEIngksvtnHSVDQLQKMLKETK 72
PDZ2_ZO1-like_ds cd06728
PDZ domain 2 of Zonula Occludens-1 (ZO-1), ZO-2 and ZO-3, and related domains; form ...
265-325 6.97e-03

PDZ domain 2 of Zonula Occludens-1 (ZO-1), ZO-2 and ZO-3, and related domains; form domain-swapping dimers; PDZ (PSD-95 (Postsynaptic density protein 95), Dlg (Discs large protein), and ZO-1 (Zonula occludens-1)) domain 2 of ZO-1, -2, -3 and related domains. Zonula occludens proteins (ZO-1, ZO-2, ZO-3) are multi-PDZ domain proteins involved in the maintenance and biogenesis of multi-protein networks at the cytoplasmic surface of intercellular contacts in epithelial and endothelial cells. They have three N-terminal PDZ domains, PDZ1-3, followed by a Src homology-3 (SH3) domain and a guanylate kinase (GuK)-like domain. Among protein-protein interactions for all ZO proteins is the binding of the first PDZ domain (PDZ1) to the C-termini of claudins , and the homo- and hetero-dimerization of ZO-proteins via their second PDZ domain (PDZ2), which takes place by symmetrical domain swapping of the first two beta-strands of PDZ2. At the cell level, ZO-1 and ZO-2 are involved in polarity maintenance, gene transcription, cell proliferation, and tumor cell metastasis. PDZ domains usually bind in a sequence-specific manner to short peptide sequences located at the C-terminal end of their partner proteins (known as PDZ binding motifs). The PDZ superfamily includes canonical PDZ domains as well as those with circular permutations and domain swapping mediated by beta-strands. This ZO family PDZ2 domain is a canonical PDZ domain containing six beta-strands A-F and two alpha-helices (alpha-helix 1 and 2), arranged in the order: beta-strands A, B, C, alpha-helix 1, beta-strands D, E, alpha-helix 2 and beta-strand F.


Pssm-ID: 467210 [Multi-domain]  Cd Length: 79  Bit Score: 36.05  E-value: 6.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2096328401 265 EITrlvPGGAAWRSGELHQGDILLKIKSgdhpeKSLDEMNDKDVIALLEGtSDDKLLITVK 325
Cdd:cd06728    26 EIT---PDSLAAKDGNLQEGDIILKING-----TPVENLSLSEAKKLIEK-SKDKLQLVVL 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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