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Conserved domains on  [gi|1711022780|gb|TVR75653|]
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MAG: hypothetical protein EA408_00075, partial [Marinilabiliales bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SalY super family cl33958
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
3-91 2.28e-04

ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];


The actual alignment was detected with superfamily member COG0577:

Pssm-ID: 440342 [Multi-domain]  Cd Length: 339  Bit Score: 38.34  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711022780   3 NYIKYAFKSLANNKVYTLINVGGLTLGlsVALALAMSIVGLAGLDRFHENQDSV-YKLIHADDSTYGRWNDASSALLAPA 81
Cdd:COG0577     1 EYLRLALRSLRRNKLRSLLTVLGIAIG--IALVIAILALGRGLRRSLLRDLDSLgFDLLTVSRTPGGSRATLSYEDLREA 78

                          90
                  ....*....|
gi 1711022780  82 VyEALPGVTD 91
Cdd:COG0577    79 L-RALPGVES 87
 
Name Accession Description Interval E-value
SalY COG0577
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
3-91 2.28e-04

ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];


Pssm-ID: 440342 [Multi-domain]  Cd Length: 339  Bit Score: 38.34  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711022780   3 NYIKYAFKSLANNKVYTLINVGGLTLGlsVALALAMSIVGLAGLDRFHENQDSV-YKLIHADDSTYGRWNDASSALLAPA 81
Cdd:COG0577     1 EYLRLALRSLRRNKLRSLLTVLGIAIG--IALVIAILALGRGLRRSLLRDLDSLgFDLLTVSRTPGGSRATLSYEDLREA 78

                          90
                  ....*....|
gi 1711022780  82 VyEALPGVTD 91
Cdd:COG0577    79 L-RALPGVES 87
 
Name Accession Description Interval E-value
SalY COG0577
ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];
3-91 2.28e-04

ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms];


Pssm-ID: 440342 [Multi-domain]  Cd Length: 339  Bit Score: 38.34  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1711022780   3 NYIKYAFKSLANNKVYTLINVGGLTLGlsVALALAMSIVGLAGLDRFHENQDSV-YKLIHADDSTYGRWNDASSALLAPA 81
Cdd:COG0577     1 EYLRLALRSLRRNKLRSLLTVLGIAIG--IALVIAILALGRGLRRSLLRDLDSLgFDLLTVSRTPGGSRATLSYEDLREA 78

                          90
                  ....*....|
gi 1711022780  82 VyEALPGVTD 91
Cdd:COG0577    79 L-RALPGVES 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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