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Conserved domains on  [gi|1463310233|emb|SVK39161|]
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Inner membrane protein yhaI [Acinetobacter baumannii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
175-281 1.75e-33

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


:

Pssm-ID: 442386  Cd Length: 118  Bit Score: 120.36  E-value: 1.75e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 175 NVFTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLGETVGVA---VTALASIAFIVIAVMIGVQRLHDLGWSGWLWLLNF 251
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILlglLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1463310233 252 VPFVGSVFGILMLVLPGSTGANRYGPPPPA 281
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYGPDPKA 118
PilA super family cl44174
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
289-317 1.00e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


The actual alignment was detected with superfamily member COG4969:

Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.40  E-value: 1.00e-06
                          10        20
                  ....*....|....*....|....*....
gi 1463310233 289 LASLIILLPIVGIIAAIALPSYQGYLERA 317
Cdd:COG4969    10 LIELMIVVAIIGILAAIAIPAYQDYVARA 38
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 108-125 8.51e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


:

Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 33.25  E-value: 8.51e-03
                          10
                  ....*....|....*....
gi 1463310233 108 CPKCGHEQPSGAE-CSACG 125
Cdd:pfam13240   2 CPNCGAENPDGAKfCPKCG 20
 
Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
175-281 1.75e-33

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


Pssm-ID: 442386  Cd Length: 118  Bit Score: 120.36  E-value: 1.75e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 175 NVFTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLGETVGVA---VTALASIAFIVIAVMIGVQRLHDLGWSGWLWLLNF 251
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILlglLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1463310233 252 VPFVGSVFGILMLVLPGSTGANRYGPPPPA 281
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYGPDPKA 118
DUF805 pfam05656
Protein of unknown function (DUF805); This family consists of several bacterial proteins of ...
 177-279 5.49e-27

Protein of unknown function (DUF805); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 461706  Cd Length: 110  Bit Score: 102.76  E-value: 5.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 177 FTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLG--ETVGVAVTALASIAFIVIAV----MIGVQRLHDLGWSGWLWLLN 250
Cdd:pfam05656   2 FDFSGRASRKEYWWFALFNFLVLFALLLLLGLLGalGLLGGALGVLISLLLLIPSLifllALTVRRLHDIGRSGWWLLLG 81

                          90       100
                  ....*....|....*....|....*....
gi 1463310233 251 FVPFVGSVFGILMLVLPGSTGANRYGPPP 279
Cdd:pfam05656  82 LIPLIGLIVLLVLLFLPGTPGPNRYGPDP 110
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
289-317 1.00e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.40  E-value: 1.00e-06
                          10        20
                  ....*....|....*....|....*....
gi 1463310233 289 LASLIILLPIVGIIAAIALPSYQGYLERA 317
Cdd:COG4969    10 LIELMIVVAIIGILAAIAIPAYQDYVARA 38
PRK10574 PRK10574
putative major pilin subunit; Provisional
 291-317 6.03e-04

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 39.63  E-value: 6.03e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1463310233 291 SLIILLPIVGIIA---AIALPSYQGYLERA 317
Cdd:PRK10574    8 TLIELMVVIAIIAilsAIGIPAYQNYLQKA 37
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 108-125 8.51e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 33.25  E-value: 8.51e-03
                          10
                  ....*....|....*....
gi 1463310233 108 CPKCGHEQPSGAE-CSACG 125
Cdd:pfam13240   2 CPNCGAENPDGAKfCPKCG 20
 
Name Accession Description Interval E-value
yhaH COG3152
Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];
175-281 1.75e-33

Uncharacterized membrane protein YhaH, DUF805 family [Function unknown];


Pssm-ID: 442386  Cd Length: 118  Bit Score: 120.36  E-value: 1.75e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 175 NVFTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLGETVGVA---VTALASIAFIVIAVMIGVQRLHDLGWSGWLWLLNF 251
Cdd:COG3152     9 KYFSFSGRASRSEYWWFVLFNLLVSLVLAILDALLGSSGAILlglLAALYALALLIPSLALTVRRLHDTGRSGWWLLLLL 88

                          90       100       110
                  ....*....|....*....|....*....|
gi 1463310233 252 VPFVGSVFGILMLVLPGSTGANRYGPPPPA 281
Cdd:COG3152    89 IPFIGIIVLLVLLFLPGTPGPNRYGPDPKA 118
DUF805 pfam05656
Protein of unknown function (DUF805); This family consists of several bacterial proteins of ...
 177-279 5.49e-27

Protein of unknown function (DUF805); This family consists of several bacterial proteins of unknown function.


Pssm-ID: 461706  Cd Length: 110  Bit Score: 102.76  E-value: 5.49e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 177 FTTNGRIGRLRYLGWSMAMTLCFLVIMGLGFLLG--ETVGVAVTALASIAFIVIAV----MIGVQRLHDLGWSGWLWLLN 250
Cdd:pfam05656   2 FDFSGRASRKEYWWFALFNFLVLFALLLLLGLLGalGLLGGALGVLISLLLLIPSLifllALTVRRLHDIGRSGWWLLLG 81

                          90       100
                  ....*....|....*....|....*....
gi 1463310233 251 FVPFVGSVFGILMLVLPGSTGANRYGPPP 279
Cdd:pfam05656  82 LIPLIGLIVLLVLLFLPGTPGPNRYGPDP 110
PilA COG4969
Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];
289-317 1.00e-06

Type IV pilus assembly protein, major pilin PilA [Cell motility, Extracellular structures];


Pssm-ID: 443995 [Multi-domain]  Cd Length: 134  Bit Score: 47.40  E-value: 1.00e-06
                          10        20
                  ....*....|....*....|....*....
gi 1463310233 289 LASLIILLPIVGIIAAIALPSYQGYLERA 317
Cdd:COG4969    10 LIELMIVVAIIGILAAIAIPAYQDYVARA 38
PilE COG4968
Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];
292-318 4.16e-06

Type IV pilus assembly protein PilE [Cell motility, Extracellular structures];


Pssm-ID: 443994 [Multi-domain]  Cd Length: 124  Bit Score: 45.45  E-value: 4.16e-06
                          10        20
                  ....*....|....*....|....*..
gi 1463310233 292 LIILLPIVGIIAAIALPSYQGYLERAN 318
Cdd:COG4968    17 LMIVVAIIGILAAIAIPSYQDYVERAR 43
PRK10574 PRK10574
putative major pilin subunit; Provisional
 291-317 6.03e-04

putative major pilin subunit; Provisional


Pssm-ID: 236718 [Multi-domain]  Cd Length: 146  Bit Score: 39.63  E-value: 6.03e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1463310233 291 SLIILLPIVGIIA---AIALPSYQGYLERA 317
Cdd:PRK10574    8 TLIELMVVIAIIAilsAIGIPAYQNYLQKA 37
HdeD COG3247
Acid resistance membrane protein HdeD, DUF308 family [General function prediction only];
187-312 1.20e-03

Acid resistance membrane protein HdeD, DUF308 family [General function prediction only];


Pssm-ID: 442478 [Multi-domain]  Cd Length: 178  Bit Score: 39.38  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1463310233 187 RYLGWSMAMTLCFLVIMGLGFLLGETVGVAVTALASIAFIVIAVMIGVQRLHDLGWSGWLWLLnFVPFVGSVFGILMLVL 266
Cdd:COG3247     7 RNWWWLLLLGILLILLGILALVWPGATLLALVILFGILLLVSGIVQLVAAFRARGWGGRGWLL-LLGILYIVAGILLLFN 85

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1463310233 267 PGSTGAnrygppppansTGVKVLASLIILLPIVGIIAAIALPSYQG 312
Cdd:COG3247    86 PLAGAL-----------VLTLLIGIWLLVSGILRIVAAFRLRKEVP 120
zinc_ribbon_2 pfam13240
zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as ...
 108-125 8.51e-03

zinc-ribbon domain; This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.


Pssm-ID: 433054 [Multi-domain]  Cd Length: 21  Bit Score: 33.25  E-value: 8.51e-03
                          10
                  ....*....|....*....
gi 1463310233 108 CPKCGHEQPSGAE-CSACG 125
Cdd:pfam13240   2 CPNCGAENPDGAKfCPKCG 20
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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