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Conserved domains on  [gi|1440416502|emb|SUI93709|]
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Uncharacterised protein [Serratia quinivorans]

Protein Classification

SirB1 family protein( domain architecture ID 11485115)

SirB1 family protein similar to Salmonella typhimurium SirB1 which is a regulator of sirC expression, and which contains transglutaminase-like and TPR domains

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10941 PRK10941
tetratricopeptide repeat-containing protein;
1-269 0e+00

tetratricopeptide repeat-containing protein;


:

Pssm-ID: 182854 [Multi-domain]  Cd Length: 269  Bit Score: 544.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502   1 MSSIADFEFNTALLSAGVILVSQSVRRDFPTAEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYR 80
Cdd:PRK10941    1 MRSLADFEFNKAPLCEGMILASQAIRRDFPSQDVYDELERLVSLAREEISQLLPQDEQLEKLIALFYGEWGFGGASGVYR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  81 LSDAIWLDKVLEGRQGTPVSLGTIFLHIAAHLDLPLLPVIFPTQLILRADWLDEEMWLINPLNGETLNEHQLEVWIKGNL 160
Cdd:PRK10941   81 LSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWLKGNI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502 161 GLGAELEDDDLDESENVMVVRKMLDTLKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNY 240
Cdd:PRK10941  161 SPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240
                         250       260
                  ....*....|....*....|....*....
gi 1440416502 241 FVEQCPEDPVSEVIKVQIHSIEPKQVTLH 269
Cdd:PRK10941  241 FVEQCPEDPISEMIRAQIHSIEQKQIVLH 269
 
Name Accession Description Interval E-value
PRK10941 PRK10941
tetratricopeptide repeat-containing protein;
1-269 0e+00

tetratricopeptide repeat-containing protein;


Pssm-ID: 182854 [Multi-domain]  Cd Length: 269  Bit Score: 544.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502   1 MSSIADFEFNTALLSAGVILVSQSVRRDFPTAEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYR 80
Cdd:PRK10941    1 MRSLADFEFNKAPLCEGMILASQAIRRDFPSQDVYDELERLVSLAREEISQLLPQDEQLEKLIALFYGEWGFGGASGVYR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  81 LSDAIWLDKVLEGRQGTPVSLGTIFLHIAAHLDLPLLPVIFPTQLILRADWLDEEMWLINPLNGETLNEHQLEVWIKGNL 160
Cdd:PRK10941   81 LSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWLKGNI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502 161 GLGAELEDDDLDESENVMVVRKMLDTLKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNY 240
Cdd:PRK10941  161 SPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240
                         250       260
                  ....*....|....*....|....*....
gi 1440416502 241 FVEQCPEDPVSEVIKVQIHSIEPKQVTLH 269
Cdd:PRK10941  241 FVEQCPEDPISEMIRAQIHSIEQKQIVLH 269
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
1-262 8.69e-115

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 330.25  E-value: 8.69e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502   1 MSSIADFEFNTALLSAgVILVSQSVRRDFPTAEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYR 80
Cdd:COG2912     1 MKSIALFDEQIDLAEA-ALLIAQDEYPDLDIEQYLAQLDALAAELRERLPAEADPLERLEALNQLLYGELGFAGNDEDYY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  81 LSDAIWLDKVLEGRQGTPVSLGTIFLHIAAHLDLPLLPVIFPTQLILRADWlDEEMWLINPLNGETLNEHQLEVWIKGNL 160
Cdd:COG2912    80 DPDNSYLNKVLDRRRGIPISLGILYLELARRLGLPLYGVNFPGHFLLRVDL-PDGPVFIDPFNGEILSEEELEELLKGLL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502 161 GLGAELEDDDLDESENVMVVRKMLDTLKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNY 240
Cdd:COG2912   159 GPPAELEPEFLAPASNREILARMLRNLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEY 238
                         250       260
                  ....*....|....*....|..
gi 1440416502 241 FVEQCPEDPVSEVIKVQIHSIE 262
Cdd:COG2912   239 FLEQCPEDPDAELIKEQLEELR 260
Transglut_core2 pfam13369
Transglutaminase-like superfamily;
32-185 7.98e-55

Transglutaminase-like superfamily;


Pssm-ID: 463859  Cd Length: 155  Bit Score: 173.89  E-value: 7.98e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  32 AEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYRLSDAIWLDKVLEGRQGTPVSLGTIFLHIAAH 111
Cdd:pfam13369   1 EAVLAELDALAAEVRARLPAELDPLEKLEALNRLLFGELGFKGNSEDYYDPDNSYLDQVLERRRGIPISLGVIYLELARR 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1440416502 112 LDLPLLPVIFPTQLILRADWLDEEMWLINPLN-GETLNEHQLEVWIKGNLGLGAELEDDDLDESENVMVVRKMLD 185
Cdd:pfam13369  81 LGLPLYGVNFPGHFLLRVDDTPDGEVYIDPFNgGEILSREDLEELLKGNLGPSAELDPEFLAPASNREILLRMLR 155
 
Name Accession Description Interval E-value
PRK10941 PRK10941
tetratricopeptide repeat-containing protein;
1-269 0e+00

tetratricopeptide repeat-containing protein;


Pssm-ID: 182854 [Multi-domain]  Cd Length: 269  Bit Score: 544.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502   1 MSSIADFEFNTALLSAGVILVSQSVRRDFPTAEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYR 80
Cdd:PRK10941    1 MRSLADFEFNKAPLCEGMILASQAIRRDFPSQDVYDELERLVSLAREEISQLLPQDEQLEKLIALFYGEWGFGGASGVYR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  81 LSDAIWLDKVLEGRQGTPVSLGTIFLHIAAHLDLPLLPVIFPTQLILRADWLDEEMWLINPLNGETLNEHQLEVWIKGNL 160
Cdd:PRK10941   81 LSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWLKGNI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502 161 GLGAELEDDDLDESENVMVVRKMLDTLKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNY 240
Cdd:PRK10941  161 SPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240
                         250       260
                  ....*....|....*....|....*....
gi 1440416502 241 FVEQCPEDPVSEVIKVQIHSIEPKQVTLH 269
Cdd:PRK10941  241 FVEQCPEDPISEMIRAQIHSIEQKQIVLH 269
SirB1 COG2912
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ...
1-262 8.69e-115

Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];


Pssm-ID: 442156 [Multi-domain]  Cd Length: 264  Bit Score: 330.25  E-value: 8.69e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502   1 MSSIADFEFNTALLSAgVILVSQSVRRDFPTAEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYR 80
Cdd:COG2912     1 MKSIALFDEQIDLAEA-ALLIAQDEYPDLDIEQYLAQLDALAAELRERLPAEADPLERLEALNQLLYGELGFAGNDEDYY 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  81 LSDAIWLDKVLEGRQGTPVSLGTIFLHIAAHLDLPLLPVIFPTQLILRADWlDEEMWLINPLNGETLNEHQLEVWIKGNL 160
Cdd:COG2912    80 DPDNSYLNKVLDRRRGIPISLGILYLELARRLGLPLYGVNFPGHFLLRVDL-PDGPVFIDPFNGEILSEEELEELLKGLL 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502 161 GLGAELEDDDLDESENVMVVRKMLDTLKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNY 240
Cdd:COG2912   159 GPPAELEPEFLAPASNREILARMLRNLKAAYLREKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEY 238
                         250       260
                  ....*....|....*....|..
gi 1440416502 241 FVEQCPEDPVSEVIKVQIHSIE 262
Cdd:COG2912   239 FLEQCPEDPDAELIKEQLEELR 260
Transglut_core2 pfam13369
Transglutaminase-like superfamily;
32-185 7.98e-55

Transglutaminase-like superfamily;


Pssm-ID: 463859  Cd Length: 155  Bit Score: 173.89  E-value: 7.98e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1440416502  32 AEVERKLQQLVDEARAAMPKDLSQEQQLDALIELFFKTWGFGGAGGVYRLSDAIWLDKVLEGRQGTPVSLGTIFLHIAAH 111
Cdd:pfam13369   1 EAVLAELDALAAEVRARLPAELDPLEKLEALNRLLFGELGFKGNSEDYYDPDNSYLDQVLERRRGIPISLGVIYLELARR 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1440416502 112 LDLPLLPVIFPTQLILRADWLDEEMWLINPLN-GETLNEHQLEVWIKGNLGLGAELEDDDLDESENVMVVRKMLD 185
Cdd:pfam13369  81 LGLPLYGVNFPGHFLLRVDDTPDGEVYIDPFNgGEILSREDLEELLKGNLGPSAELDPEFLAPASNREILLRMLR 155
TPR_9 pfam13371
Tetratricopeptide repeat;
187-259 2.40e-20

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 82.27  E-value: 2.40e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1440416502 187 LKAALMEEQQMEMALRASETVLCFDPDDPYEIRDRGLIYAQLECNHIAISDLNYFVEQCPEDPVSEVIKVQIH 259
Cdd:pfam13371   1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRELLR 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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