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Conserved domains on  [gi|1243936863|emb|SOE22581|]
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protein of unknown function [Spirosomataceae bacterium TFI 002]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4890 super family cl24715
Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around ...
 27-106 5.04e-07

Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam16231:

Pssm-ID: 435230  Cd Length: 109  Bit Score: 45.27  E-value: 5.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243936863  27 LTPQERADRATKQMTEKLSLNEDQVFAITFVNNDFYASSKDRPNFRE-----------------MSTEDREAFREEMKGK 89
Cdd:pfam16231  10 LDPEMRAERMTERMVKEYSLNETQKNQLLELNKKFVTKMGDRPTRFDrddvrkknkrsrkclqaTPKEYREKRVKEMKAD 89

                          90
                  ....*....|....*..
gi 1243936863  90 NEIYQASIQAILTKEQF 106
Cdd:pfam16231  90 RESYRAELKKILTKDQY 106
 
Name Accession Description Interval E-value
DUF4890 pfam16231
Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around ...
 27-106 5.04e-07

Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


Pssm-ID: 435230  Cd Length: 109  Bit Score: 45.27  E-value: 5.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243936863  27 LTPQERADRATKQMTEKLSLNEDQVFAITFVNNDFYASSKDRPNFRE-----------------MSTEDREAFREEMKGK 89
Cdd:pfam16231  10 LDPEMRAERMTERMVKEYSLNETQKNQLLELNKKFVTKMGDRPTRFDrddvrkknkrsrkclqaTPKEYREKRVKEMKAD 89

                          90
                  ....*....|....*..
gi 1243936863  90 NEIYQASIQAILTKEQF 106
Cdd:pfam16231  90 RESYRAELKKILTKDQY 106
 
Name Accession Description Interval E-value
DUF4890 pfam16231
Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around ...
 27-106 5.04e-07

Domain of unknown function (DUF4890); This family consists of uncharacterized proteins around 200 residues in length and is mainly found in various Bacteroides species. The function of this family is unknown.


Pssm-ID: 435230  Cd Length: 109  Bit Score: 45.27  E-value: 5.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1243936863  27 LTPQERADRATKQMTEKLSLNEDQVFAITFVNNDFYASSKDRPNFRE-----------------MSTEDREAFREEMKGK 89
Cdd:pfam16231  10 LDPEMRAERMTERMVKEYSLNETQKNQLLELNKKFVTKMGDRPTRFDrddvrkknkrsrkclqaTPKEYREKRVKEMKAD 89

                          90
                  ....*....|....*..
gi 1243936863  90 NEIYQASIQAILTKEQF 106
Cdd:pfam16231  90 RESYRAELKKILTKDQY 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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