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Conserved domains on  [gi|1099451914|emb|SFK79987|]
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flagellin [Brevibacillus centrosporus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flagella_HExxH super family cl41492
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-474 3.30e-130

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


The actual alignment was detected with superfamily member NF033876:

Pssm-ID: 468217  Cd Length: 380  Bit Score: 384.70  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 110 IQKEIAQIKEETDRIANTTEFNTMKLLN----VASGDQNQTDLINLLKNSWLGQAEQLISNYFGLQADNYTMNLVLEE-G 184
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDqgasVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYtD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 185 TAGGTLAYVQASVPASGLGTNLELHIEMADYRAGN---------ITDRTIAHEMVHAVFNRSVNVGNatgIPTWFNEGSA 255
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANlpnggtapqYLDRTIAHEMVHAVMGRTMNFSS---LPTWFIEGTA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 256 ELIQGADERLAIELAALGGNNAVNrATIVGNAtnAWGGTSQEYAGAFAAVRYIHDQIKAAGGSGIKDIYSYLSGNPTRTL 335
Cdd:NF033876  158 EFIHGADERLAADLAGGTSDAAGV-AALFNGG--AWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYLKANAGSTL 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 336 DDALTNASSGAFADLTDFQSKWSADGEAFIAG-MDLGNADTGAIGGADADGGAVRTNTSVVPDNAA-----AVQHFNMVY 409
Cdd:NF033876  235 DQALAAATGGAFATEADFLADFNANGAAFIKNyMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSypgedPLSGFNVIW 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 410 PTVAEND-PLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQFDTAITVVSSERSRL 474
Cdd:NF033876  315 PTFSGAGtTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSNQRAYL 380
PRK12804 super family cl32830
flagellin; Provisional
 1-137 1.84e-47

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12804:

Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.48  E-value: 1.84e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANE-TNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN 137
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLD 138
PRK12804 super family cl32830
flagellin; Provisional
 410-543 4.15e-30

flagellin; Provisional


The actual alignment was detected with superfamily member PRK12804:

Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 119.72  E-value: 4.15e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 410 PTVAENDPLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQF-----------------------DTAITV 466
Cdd:PRK12804  145 APAAGTKSLTFQIGANAAQQLSVNIEAMSADALGVKDTDGTLVTGKSVSDIdvtkfanaaaaadggfddqlkivDGAIKQ 224

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1099451914 467 VSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK12804  225 VSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-474 3.30e-130

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 384.70  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 110 IQKEIAQIKEETDRIANTTEFNTMKLLN----VASGDQNQTDLINLLKNSWLGQAEQLISNYFGLQADNYTMNLVLEE-G 184
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDqgasVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYtD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 185 TAGGTLAYVQASVPASGLGTNLELHIEMADYRAGN---------ITDRTIAHEMVHAVFNRSVNVGNatgIPTWFNEGSA 255
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANlpnggtapqYLDRTIAHEMVHAVMGRTMNFSS---LPTWFIEGTA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 256 ELIQGADERLAIELAALGGNNAVNrATIVGNAtnAWGGTSQEYAGAFAAVRYIHDQIKAAGGSGIKDIYSYLSGNPTRTL 335
Cdd:NF033876  158 EFIHGADERLAADLAGGTSDAAGV-AALFNGG--AWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYLKANAGSTL 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 336 DDALTNASSGAFADLTDFQSKWSADGEAFIAG-MDLGNADTGAIGGADADGGAVRTNTSVVPDNAA-----AVQHFNMVY 409
Cdd:NF033876  235 DQALAAATGGAFATEADFLADFNANGAAFIKNyMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSypgedPLSGFNVIW 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 410 PTVAEND-PLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQFDTAITVVSSERSRL 474
Cdd:NF033876  315 PTFSGAGtTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSNQRAYL 380
PRK08869 PRK08869
polar flagellin E;
3-543 3.26e-63

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 211.33  E-value: 3.26e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIqswrNNQQNLSNSQ----KSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEG 78
Cdd:PRK08869    4 VNTNVSAM----TAQRNLNGATsalsQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  79 GMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNvasgdqnqtdlinllknswlg 158
Cdd:PRK08869   80 AMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN--------------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 159 qaeqlisnyfglqadnytmnlvleeGTAGGTLAYVQASvpaSGLGTNLELHIEMADyragnitdrtiAHEMVHAVFnrsv 238
Cdd:PRK08869  139 -------------------------GSFGTKSFQIGAN---SGEAVSLDLKSMRSD-----------AKIMGGVSY---- 175

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 239 nVGNATGIPTWfnegsaeliqgaderlaielAALGGNNAVNrativGNATNAwGGTSQEYAgafaavryihdqIKAAGGS 318
Cdd:PRK08869  176 -DAEGGADKDW--------------------TVGAGNTDLN-----VSFDDK-GGETQAIT------------INAKAGD 216

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 319 GIKDIYSYLSGNptrtldDALTNASSGAFADLTDFQSKWSADGEAFIAGmdlgnadtGAIGGADADGGAvrtntsvvpdn 398
Cdd:PRK08869  217 DIEELATYINGQ------TDGVGASVSEDGKLQLFAAGQKVSGGVSFSG--------GLAAELGLGNAT----------- 271

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 399 aaavqhfnmvYPTVaendplnlhigsnssqtmklgltkvdsNSLGISTadvVQDAQSAIGQFDTAITVVSSERSRLGAIQ 478
Cdd:PRK08869  272 ----------AVTV---------------------------DDLDIST---VGGAQQAVAVIDAALKYVDSHRADLGAFQ 311

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914 479 NRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK08869  312 NRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK12804 PRK12804
flagellin; Provisional
 1-137 1.84e-47

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.48  E-value: 1.84e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANE-TNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN 137
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLD 138
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-166 1.28e-44

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 157.72  E-value: 1.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLnvaSGDQNQTDLINLLKNSWLGQA 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLF---AGTATDTPPFQVDYQGDAGQR 157


                  ....*.
gi 1099451914 161 EQLISN 166
Cdd:COG1344   158 TAALGA 163
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-137 1.06e-35

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 130.16  E-value: 1.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMVE 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914  83 LHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN 137
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
PRK12804 PRK12804
flagellin; Provisional
 410-543 4.15e-30

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 119.72  E-value: 4.15e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 410 PTVAENDPLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQF-----------------------DTAITV 466
Cdd:PRK12804  145 APAAGTKSLTFQIGANAAQQLSVNIEAMSADALGVKDTDGTLVTGKSVSDIdvtkfanaaaaadggfddqlkivDGAIKQ 224

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1099451914 467 VSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK12804  225 VSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-131 1.06e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 95.88  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFN 131
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGN 130
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
435-543 1.18e-21

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 94.16  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 435 TKVDSNSLGISTADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNM 514
Cdd:COG1344   139 TATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRL 218

                          90       100
                  ....*....|....*....|....*....
gi 1099451914 515 TKTNILMQASAAMLAQANQNPqgILQMLR 543
Cdd:COG1344   219 TKLQTLLQAALAALAQANQLS--LLDLLR 245
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 461-542 9.71e-20

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 83.92  E-value: 9.71e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 461 DTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQ 540
Cdd:pfam00700   5 DEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQSLLN 84


                  ..
gi 1099451914 541 ML 542
Cdd:pfam00700  85 LL 86
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
418-543 6.98e-11

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 63.32  E-value: 6.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 418 LNLHIGSNSSQTMKL----GLTKVDSNSLGIST------ADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSI 487
Cdd:NF038071  148 VTFQIGGSSAEKLDVdasaNVQKVNAEVVGTEKdvtagiGTQAKAASAAITKLDTLLGDIGAVRSQFGANINRLEHTVNN 227

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 488 SMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:NF038071  228 LSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 445-533 1.28e-07

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 53.51  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 445 STADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQAS 524
Cdd:TIGR02550 211 SSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAA 290


                  ....*....
gi 1099451914 525 AAMLAQANQ 533
Cdd:TIGR02550 291 LKTFAKIQQ 299
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 110-474 3.30e-130

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 384.70  E-value: 3.30e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 110 IQKEIAQIKEETDRIANTTEFNTMKLLN----VASGDQNQTDLINLLKNSWLGQAEQLISNYFGLQADNYTMNLVLEE-G 184
Cdd:NF033876    1 LQKEINQLKQEIDRIAETTEFNGKKLFDqgasVGSADPDKQAILDGLKSGWLENAEDLIKEYYGLTADGADLTVNLEYtD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 185 TAGGTLAYVQASVPASGLGTNLELHIEMADYRAGN---------ITDRTIAHEMVHAVFNRSVNVGNatgIPTWFNEGSA 255
Cdd:NF033876   81 GAGGTLAYVSSGSGGGGKGGNLTLTIDMADFSPANlpnggtapqYLDRTIAHEMVHAVMGRTMNFSS---LPTWFIEGTA 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 256 ELIQGADERLAIELAALGGNNAVNrATIVGNAtnAWGGTSQEYAGAFAAVRYIHDQIKAAGGSGIKDIYSYLSGNPTRTL 335
Cdd:NF033876  158 EFIHGADERLAADLAGGTSDAAGV-AALFNGG--AWTSTSADYSAGYAAVRYLHDQIKAAGGGGIKDIMQYLKANAGSTL 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 336 DDALTNASSGAFADLTDFQSKWSADGEAFIAG-MDLGNADTGAIGGADADGGAVRTNTSVVPDNAA-----AVQHFNMVY 409
Cdd:NF033876  235 DQALAAATGGAFATEADFLADFNANGAAFIKNyMDLTNADTGAIGGLDADGGPVLTAESVVPDTGSypgedPLSGFNVIW 314

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 410 PTVAEND-PLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQFDTAITVVSSERSRL 474
Cdd:NF033876  315 PTFSGAGtTVQLQVGANAGQTIEISFGDMSAEALGLDDVDVSTDATSAIDIFDKALDYVSNQRAYL 380
PRK08869 PRK08869
polar flagellin E;
3-543 3.26e-63

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 211.33  E-value: 3.26e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIqswrNNQQNLSNSQ----KSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEG 78
Cdd:PRK08869    4 VNTNVSAM----TAQRNLNGATsalsQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEG 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  79 GMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNvasgdqnqtdlinllknswlg 158
Cdd:PRK08869   80 AMNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLN--------------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 159 qaeqlisnyfglqadnytmnlvleeGTAGGTLAYVQASvpaSGLGTNLELHIEMADyragnitdrtiAHEMVHAVFnrsv 238
Cdd:PRK08869  139 -------------------------GSFGTKSFQIGAN---SGEAVSLDLKSMRSD-----------AKIMGGVSY---- 175

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 239 nVGNATGIPTWfnegsaeliqgaderlaielAALGGNNAVNrativGNATNAwGGTSQEYAgafaavryihdqIKAAGGS 318
Cdd:PRK08869  176 -DAEGGADKDW--------------------TVGAGNTDLN-----VSFDDK-GGETQAIT------------INAKAGD 216

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 319 GIKDIYSYLSGNptrtldDALTNASSGAFADLTDFQSKWSADGEAFIAGmdlgnadtGAIGGADADGGAvrtntsvvpdn 398
Cdd:PRK08869  217 DIEELATYINGQ------TDGVGASVSEDGKLQLFAAGQKVSGGVSFSG--------GLAAELGLGNAT----------- 271

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 399 aaavqhfnmvYPTVaendplnlhigsnssqtmklgltkvdsNSLGISTadvVQDAQSAIGQFDTAITVVSSERSRLGAIQ 478
Cdd:PRK08869  272 ----------AVTV---------------------------DDLDIST---VGGAQQAVAVIDAALKYVDSHRADLGAFQ 311

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914 479 NRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK08869  312 NRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK12806 PRK12806
flagellin; Provisional
 3-542 1.30e-52

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 186.05  E-value: 1.30e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMVE 82
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  83 LHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNvasgdqnqtdlinllkNSWLGQAEQ 162
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILD----------------GSFSGASFQ 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 163 LISNyfglqadnytmnlvleegtAGGTLAYVQASVPASGLGTN-LELHIEMADYRAGNITDrtiahemvhavfnrSVNVG 241
Cdd:PRK12806  149 VGAN-------------------SNQTINFSIGSIKASSIGGIaTATGTEVAGAAATDITI--------------AIGGG 195

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 242 NATGIPTWFNegSAELIQGADERLAIELAAlggnnAVNRATIVG-NATNAWGGTSQEYAGAFAAVRYIHDQIKAAGGSGI 320
Cdd:PRK12806  196 AATSINSSAN--FTGALNGQDATSAYAKAA-----AINDAGIGGlSVTASTSGTQAVGAIGGTAGDTYNLTINGVAIYTN 268

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 321 KDIYSYLSGNPTRTLDDALTNASSGAFADLTDFQSKWSADGEAFIAGMDLGNADTGAIG---GADADGGAVRTNTSVVPD 397
Cdd:PRK12806  269 LDVATALTNSDLRDAINGVSNQTGVVASLNGGNMTLTAADGRNITVTESGTGFTAGTDGltvTGGAFDGALRGTLSISAV 348

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 398 NAAAVQhfnmvyPTVAendplnlhigsNSSQTMKLGLTKVDSNSLGISTAdvvQDAQSAIGQFDTAITVVSSERSRLGAI 477
Cdd:PRK12806  349 DTIAIG------GTVA-----------NIGLSANISKDTVGIDSLDVSTA---SGAQTAIKRIDAALNSVNSNRANMGAL 408

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914 478 QNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQML 542
Cdd:PRK12806  409 QNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLL 473
PRK12804 PRK12804
flagellin; Provisional
 1-137 1.84e-47

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 167.48  E-value: 1.84e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANE-TNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN 137
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLD 138
PRK06819 PRK06819
FliC/FljB family flagellin;
17-543 1.31e-46

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 167.26  E-value: 1.31e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  17 QQNLSNSQKSL----EKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMVELHSLLQRGRE 92
Cdd:PRK06819   15 QNNLNKSQSSLgtaiERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNEINNNLQRVRE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  93 LSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLnvasgdqnqtdlinllknswlgqaeqlisnyfglqA 172
Cdd:PRK06819   95 LTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVL-----------------------------------A 139

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 173 DNYTMNlvleegtaggtlayvqasvpasglgtnlelhiemadyragnitdrtiahemvhavfnrsVNVGNATGiptwfne 252
Cdd:PRK06819  140 EDTTMS-----------------------------------------------------------IQVGANDG------- 153

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 253 gsaeliqgadERLAIELaalggnNAVNRATIVGNATNAWGGTSQEYAGAFAavryihdqikaaggsgikdiysylsgnpT 332
Cdd:PRK06819  154 ----------ETIDINL------QKIDSKSLGLGSFSVSGVSGALTSLTFT----------------------------D 189

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 333 RTLDDALTNASSGAFADLTDFQSKwsaDGEAFIAGMDLGNADTGAIGGADADGGAVRTNTSVVPDNAAAvqhfnmvyptV 412
Cdd:PRK06819  190 TALDTSVTGVTTTTALDFSDISTF---AKGATVHGIGDVGTDGAYADGYVIRTTDGKQYKGEVDATNGK----------V 256

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 413 AENDPLNlhigSNSSQTMKLGLTKVDSNSLGISTADVVQDaqsaigqFDTAITVVSSERSRLGAIQNRLEHALSISMSNR 492
Cdd:PRK06819  257 TFADDAN----GDPITDATKLEAAAQFSPAGKATASPLET-------LDDALKQVDGLRSSLGAVQNRFESTVTNLNNTV 325

                         490       500       510       520       530
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1099451914 493 ENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK06819  326 TNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLLR 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
1-166 1.28e-44

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 157.72  E-value: 1.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLnvaSGDQNQTDLINLLKNSWLGQA 160
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLF---AGTATDTPPFQVDYQGDAGQR 157


                  ....*.
gi 1099451914 161 EQLISN 166
Cdd:COG1344   158 TAALGA 163
PRK08026 PRK08026
FliC/FljB family flagellin;
17-543 9.68e-44

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 162.99  E-value: 9.68e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  17 QQNLSNSQKSL----EKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMVELHSLLQRGRE 92
Cdd:PRK08026   15 QNNINKNQSALsssiERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  93 LSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLL--------NVASGDqNQTDLINLlknswlgqaEQLI 164
Cdd:PRK08026   95 LTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLakdgsmkiQVGAND-GETITIDL---------KKID 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 165 SNYFGLQADNytmnlVLEEGTAGGTLA----YVQASVPASGLGTNlELHIEMADYRAGNITDRTIAHEMVHAVFNRSVNV 240
Cdd:PRK08026  165 SDTLGLDGFN-----VNGKGTVANTAAtvsdLTAAGATLDTTGLY-DVKTKNAALTTADALAKLGDGDKVTATATGGDYT 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 241 GNATGIPTWFNEGSAELIQGADERLAIELAALGGNNAVNRA-----TIVGNAT--NAWGGTSQEYAGAFAAVRYihDQIK 313
Cdd:PRK08026  239 YNAKSGKYQAADLAATLTPDVGGTAGASYTIKDGTYEVNVDsdgkiTLGGSALyiDATGNLTTNNAGAATKATL--DALK 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 314 AAGGSGIKDIYSYLSgNPTRTLDDALTNASSGAFAdlTDFQSKWSADGEAFIAGMDLGNADTGAIGGADadggAVRTNTS 393
Cdd:PRK08026  317 KTASEGAATAKAALA-AAGVTVADGVTAKTVKMSY--TDKNGKVIDGGYAVKTGDDYYAADYDEITGAI----SATTTYY 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 394 VVPDNAAAVQhfnMVYPTVAENDPLNLHIGSNSSQTMKLGLTKvDSNSLGISTADVVQDAQSAIGQFDTAitvvsseRSR 473
Cdd:PRK08026  390 TAKDGTTKTA---ANKLGGADGKTEVVTIDGKTYVASDGKQTT-LAEAAATTTENPLAALDAAIASIDKF-------RSS 458

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 474 LGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK08026  459 LGAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 528
PRK12808 PRK12808
flagellin; Provisional
 1-543 9.73e-39

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 147.79  E-value: 9.73e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12808    1 MRINTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNVASGDQNQTdlinllknswlgqa 160
Cdd:PRK12808   81 NSVSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSINIQT-------------- 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 161 eqlisnyfgLQADNYTMNLVLEegtaggtlayvQASVPASGLGTNlelHIEMADYRAGNITDRTIAHEMVHAVFNRSVNV 240
Cdd:PRK12808  147 ---------LDSSDGDKQIGID-----------LKSATLEALGIN---DLSIGANTDIEAVSTKIAALDKNTIAKATVEA 203

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 241 GNAtgiptwFNEGSAELiqGADERLAIELAALGGNNAVNRATIVGNATNAWGGTSQEYAGAFAAVRYIHDQIKAAggsgI 320
Cdd:PRK12808  204 KAA------FDKAKDDT--KAEDSNILDAAADGFKDGKADDAAKDVEAIKTALSAFTGAATLEEAEAAKTAFEVA----Q 271

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 321 KDIYsylsgnptrTLDDALTNASSGAFADLTDFQSKWSADGEA--FIAGMDlgNADTGAIGGADADGGAV-RTNTSVVPD 397
Cdd:PRK12808  272 KDLV---------DTYTKKAALTKDAVADLDTAKTTSTRSKAAkdLVAAYD--KAKSGAKPNDVAKAYLEaKMAYEKDNN 340

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 398 NAAAVQHFnmvyptvaENDPLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVvqDAQSAIGQFDTAITVVSSERSRLGAI 477
Cdd:PRK12808  341 AIDGKSKL--------EAADDALEKDAIKTDASKVLVPKLEAAKKATTNSKA--DSLDAVKAIDEALKTVADNRATLGAT 410

                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 478 QNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK12808  411 LNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 476
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 3-137 1.06e-35

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 130.16  E-value: 1.06e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMVE 82
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914  83 LHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN 137
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLA 135
PRK13588 PRK13588
flagellin B; Provisional
 2-543 8.34e-33

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 131.53  E-value: 8.34e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:PRK13588    4 RINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNVASgdQNQTDLINLLKNswlgqae 161
Cdd:PRK13588   84 EQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSF--SNKEFQIGAYSN------- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 162 QLISNYFGLQADNYTMNLVLEEGTAGGTlaYVQASVPASGLGT---NLELHIEMADYRAGNITDRTIAHEMVHAVFNRSV 238
Cdd:PRK13588  155 TTVKASIGATSSDKIGHVRMETSSFSGE--GMLASAAAQNLTEvglNFKQVDGVNDYKIETVRISTSAGTGIGALSEIIN 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 239 NVGNATGIPTWFN---EGSAELIQGADERLAIELAALGGNNAVNRATIVGNATNAwggtsqeyagafaavryIHDQIKAA 315
Cdd:PRK13588  233 RFSDTLGVRASYNvmaTGGTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLINA-----------------INSVKDRT 295

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 316 GGSGIKDIysylSGNPTRTLDDAL-----TNASSGAFADLTDFQSKWSADgEAFIAGMDLGNADT----------GAIGG 380
Cdd:PRK13588  296 GVEASLDI----QGRINLTSIDGRaisvhAASASGQVFGGGNFAGISGTQ-HAVVGRLTLTRTDArdiivsgvnfSHVGF 370

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 381 ADADGGA-----VRTNTSVVPDNAAAVQHFNmvyptvaendplnlHIGSNSSqtmklglTKVDSNSLGISTadvVQDAQS 455
Cdd:PRK13588  371 HSAQGVAeytvnLRAVRGIFDANVASAAGAN--------------ANGAQAE-------TNSQGIGAGVTS---LKGAMI 426

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 456 AIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNP 535
Cdd:PRK13588  427 VMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQ 506


                  ....*...
gi 1099451914 536 QGILQMLR 543
Cdd:PRK13588  507 QNVLRLLQ 514
PRK12803 PRK12803
flagellin; Provisional
 1-144 6.62e-32

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 125.69  E-value: 6.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12803    1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNVASGDQN 144
Cdd:PRK12803   81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSNKSAAQN 144
PRK12804 PRK12804
flagellin; Provisional
 410-543 4.15e-30

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 119.72  E-value: 4.15e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 410 PTVAENDPLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIGQF-----------------------DTAITV 466
Cdd:PRK12804  145 APAAGTKSLTFQIGANAAQQLSVNIEAMSADALGVKDTDGTLVTGKSVSDIdvtkfanaaaaadggfddqlkivDGAIKQ 224

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1099451914 467 VSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK12804  225 VSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK13589 PRK13589
flagellin A;
2-543 5.56e-30

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 123.98  E-value: 5.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:PRK13589    4 RINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN----------VASGDQNQTDLINL 151
Cdd:PRK13589   84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSgnftnqefqiGASSNQTIKATIGA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 152 LKNSWL--------------GQAEQLISNYFGLQaDNYTMNLVLEE--GTAGGTLA-YVQASVPASGLGTNLELHIE-MA 213
Cdd:PRK13589  164 TQSSKIgvtrfetggrsftsGEVQLTIKNYNGID-DFKFQKVVISTsvGTGLGALAeEINKSADKTGVRATFTVETTgVA 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 214 DYRAGNITDRTIAHEMV------------HAVFNRSVNVGNATGIPTWFNEGSAELIQGADERLAIELAALGGNNAVNRA 281
Cdd:PRK13589  243 AIKAGTTSQDFAINGVTigqvaykdgdgnGALVSAINSVKDTTGVEASKDANGQLVLTSRDGRGIKIDGNIGGGAGILAN 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 282 tivgnatnawggtSQEYAGAFAAVRYIHDQIKAAG------GSGIKDIYSYLS-------GNPTRTLDDAL--TNASSGA 346
Cdd:PRK13589  323 -------------MKENYGRLSLVKNDGKDILISGtnlsaiGMGATDMISQASvslreskGRIDANIADAMgfNSYKGGG 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 347 FADLTDFQSKWSADGEAFIAGMDLGNADTgaIGGADADGGAVRTNTSVVPDNAAAVQHFNMVYPTvaendplNLHIGSNS 426
Cdd:PRK13589  390 KFVVTGGFSSVSAFMSSEGSGFSRGSGYS--VGSGKNYSVGLSQGIQIISSASAMSTVYNVSAGS-------GFSSGSGL 460

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 427 SQ--TMKLGLTKVDSNSLGISTadvVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRD 504
Cdd:PRK13589  461 SQfaTMKTTAAGVKDETAGVTT---LKGAMAVMDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRD 537

                         570       580       590
                  ....*....|....*....|....*....|....*....
gi 1099451914 505 LDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK13589  538 VDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ 576
PRK08411 PRK08411
flagellin; Reviewed
 2-543 7.56e-30

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 123.56  E-value: 7.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:PRK08411    4 RINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN----------VASGDQNQTDLINL 151
Cdd:PRK08411   84 EQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSgnftnqefqiGASSNQTVKATIGA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 152 LKNSWLG--------------QAEQLISNYFGLqaDNYTMNLVL---EEGTAGGTLAYV--------------------Q 194
Cdd:PRK08411  164 TQSSKIGvtrfetgarittsgVVQLTIKNYNGI--DDFKFQNVVistSVGTGLGALAEEinknadktgvratfdvettgV 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 195 ASVPASGLGTNLELH---IEMADYRAGNITDRTIAhemvhavfnrSVN-VGNATGIPTWFNEGSAELIQGADERLAIELA 270
Cdd:PRK08411  242 AAIKAGTTSDDFAINgvtIGKVEYKDGDGNGALVA----------AINsVKDTTGVEASIDENGKLVLTSRDGRGIKIDG 311

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 271 ALGGNNAVN--------RATIVGN-----------ATNAWGGTSQEYAGAFAAVRYIHDQIKAaggsgikDIYSYLSGNP 331
Cdd:PRK08411  312 DIGGGSGILanmkenygRLSLVKNdgkdilisgtnLSFAGMGATDMISQASVSLRESKGQIDA-------NVADAMGFNS 384

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 332 TRTLDDALTNASSGAFAdltdfqskwSADGEAFIAGmdlgnadTGAIGGADADGGAVRTNTSVVPDNAAAVQHFNMVYPT 411
Cdd:PRK08411  385 YKGGVMIQGFSSVSAFM---------SSEGSGFSQG-------SGYSVGSGKNYSVGLSSGIQISSASAMSTVYVVSAGS 448

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 412 vaendplNLHIGSNSSQ--TMKLGLTKVDSNSLGISTadvVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISM 489
Cdd:PRK08411  449 -------GFSSGSNLSQfaAMKTTAANVKDETAGVTT---LKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNIT 518

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1099451914 490 SNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK08411  519 VTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLLQ 572
PRK12584 PRK12584
flagellin A; Reviewed
 2-542 3.25e-29

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 121.17  E-value: 3.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:PRK12584    4 QVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMD 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN----------VASGDQNQTDLINL 151
Cdd:PRK12584   84 EQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSgqftnkefqvGAYSNQSIKASIGS 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 152 LKNSWLGQAeQLISNYFGLQADNYTMNLVLEEGTAGGTLAYVQASVPA-SGLGTNLELHIEMAD-------YRAGNITDR 223
Cdd:PRK12584  164 TTSDKIGQV-RIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAgTGIGVLAEVINKNSDrtgvkayASVITTSDV 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 224 TIAHEMVHAVFNRSVNVGNATGIPTwfNEGSAELIQgaderlAIelaalggnNAVNRATIVGNATNAWGGTSqeyagafa 303
Cdd:PRK12584  243 AVQSGSLSNLTLNGIHIGNIADIKK--NDSDGRLVA------AI--------NAVTSETGVEAYTDQKGRLN-------- 298

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 304 avryihdqIKAAGGSGIKdiysyLSGNPTRTLDDALTNASSGafadlTDFQSKWSADGEAFIAGMD-----LGNADTGAI 378
Cdd:PRK12584  299 --------LRSIDGRGIE-----IKTDSVSNGPSALTMVNGG-----QDLTKGSTNYGRLSLTRLDardinVVSASDSQH 360

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 379 GGADADGGAvrtntsvvpDNAAAVQHFNMVYPTVAENDPLNLHIGSNSSQTMKLGLTKVDSNSLGISTADVVQD-AQSAI 457
Cdd:PRK12584  361 LGFSAIGFG---------ESQVAETTVNLRDVTGNFNANVKSASGANYNAVIASGNQSLGSGVTTLRGAMVVMDiAESAM 431

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 458 GQFDTAitvvsseRSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQG 537
Cdd:PRK12584  432 KMLDKV-------RSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQN 504


                  ....*
gi 1099451914 538 ILQML 542
Cdd:PRK12584  505 ILRLL 509
PRK12807 PRK12807
flagellin; Provisional
 1-136 7.46e-29

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 116.07  E-value: 7.46e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLL 136
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL 136
PRK12802 PRK12802
flagellin; Provisional
 3-144 1.53e-28

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 114.98  E-value: 1.53e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   3 INNNIAAIqswrNNQQNLSNSQ----KSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEG 78
Cdd:PRK12802    5 VNTNITSL----TVQKNLSRASdalsTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914  79 GMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLNVASGDQN 144
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMT 146
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 1-128 1.01e-22

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 98.53  E-value: 1.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK07701    1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTT 128
Cdd:PRK07701   81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ 128
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 2-131 1.06e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 95.88  E-value: 1.06e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   2 RINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGMV 81
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1099451914  82 ELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFN 131
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGN 130
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
435-543 1.18e-21

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 94.16  E-value: 1.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 435 TKVDSNSLGISTADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNM 514
Cdd:COG1344   139 TATDTPPFQVDYQGDAGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRL 218

                          90       100
                  ....*....|....*....|....*....
gi 1099451914 515 TKTNILMQASAAMLAQANQNPqgILQMLR 543
Cdd:COG1344   219 TKLQTLLQAALAALAQANQLS--LLDLLR 245
PRK12805 PRK12805
FliC/FljB family flagellin;
1-148 1.59e-20

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 91.86  E-value: 1.59e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTEFNTMKLLN-VASGDQNQTDL 148
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDqTATGAATQVSI 149
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 461-542 9.71e-20

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 83.92  E-value: 9.71e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 461 DTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQ 540
Cdd:pfam00700   5 DEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQSLLN 84


                  ..
gi 1099451914 541 ML 542
Cdd:pfam00700  85 LL 86
PRK12802 PRK12802
flagellin; Provisional
 418-542 5.25e-17

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 81.46  E-value: 5.25e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 418 LNLHIGSNSSQTMKLGLT---KVDSNSLGISTADVVQ---------DAQSAIGQFDTAITVVSSERSRLGAIQNRLEHAL 485
Cdd:PRK12802  145 MTFQVGANTGQSNQITFGlsaSFDATGLGVGSGTLITgadsaaaetNAQAAITAIDAALQTINTTRADLGAAQNRLQSTI 224

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1099451914 486 SISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQML 542
Cdd:PRK12802  225 SNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLL 281
PRK06663 PRK06663
flagellar hook-associated protein 3;
1-127 9.70e-17

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 82.43  E-value: 9.70e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK06663    2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANT 127
Cdd:PRK06663   82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANA 128
PRK12807 PRK12807
flagellin; Provisional
 424-543 1.14e-16

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 80.64  E-value: 1.14e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 424 SNSSQTMKLGLTKVDSNSLGI------STADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTS 497
Cdd:PRK12807  162 SATNQQITIKLANTTAEKLGIdattsnISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMAS 241

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1099451914 498 SESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:PRK12807  242 AASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
flgL PRK12717
flagellar hook-associated protein 3;
1-120 1.33e-11

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 67.07  E-value: 1.33e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK12717    1 MRISTSQFYESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEE 120
Cdd:PRK12717   81 TSINDTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQ 120
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
418-543 6.98e-11

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 63.32  E-value: 6.98e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 418 LNLHIGSNSSQTMKL----GLTKVDSNSLGIST------ADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSI 487
Cdd:NF038071  148 VTFQIGGSSAEKLDVdasaNVQKVNAEVVGTEKdvtagiGTQAKAASAAITKLDTLLGDIGAVRSQFGANINRLEHTVNN 227

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1099451914 488 SMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQMLR 543
Cdd:NF038071  228 LSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK12805 PRK12805
FliC/FljB family flagellin;
424-542 3.89e-10

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 61.04  E-value: 3.89e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 424 SNSSQTMKLGLTKVDSNSLGISTADVVQDAQSAIgqfDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIR 503
Cdd:PRK12805  170 SAGTITLGSGSTVAGYSALSVADADSSQEATEAI---DELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIE 246

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1099451914 504 DLDMAKEMMNMTKTNILMQASAAMLAQANQNPQGILQML 542
Cdd:PRK12805  247 DADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
1-128 6.12e-09

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 58.82  E-value: 6.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK14692    1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTT 128
Cdd:PRK14692   81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANTS 128
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 445-533 1.28e-07

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 53.51  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 445 STADVVQDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQAS 524
Cdd:TIGR02550 211 SSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAA 290


                  ....*....
gi 1099451914 525 AAMLAQANQ 533
Cdd:TIGR02550 291 LKTFAKIQQ 299
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 1-128 1.84e-07

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 53.38  E-value: 1.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRI------NNNIAAIqswRNNQQNLSNSQkslEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQ 74
Cdd:PRK08870    1 MRIstaqmyQQSVNSM---LDQQSQLSQLQ---QQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQ 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1099451914  75 TAEGGMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTT 128
Cdd:PRK08870   75 QEESTLGSVEDLLQRARELVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSK 128
flgL PRK08073
flagellar hook-associated protein 3;
1-129 2.11e-06

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 49.59  E-value: 2.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAiqSWRNNQ-QNLS-NSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEG 78
Cdd:PRK08073    1 MRVSTFQNA--NWAKNQlMDLNvQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTEN 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1099451914  79 GMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTTE 129
Cdd:PRK08073   79 TLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKE 129
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 451-513 5.11e-06

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 48.45  E-value: 5.11e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1099451914 451 QDAQSAIGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMN 513
Cdd:PRK07701  208 QGVSNLLSDIDQHIDNVLAVRAELGARSNRLELIENRLSDQEVNATKLLSDNEDVDLAEVITD 270
PRK12687 PRK12687
flagellin; Reviewed
 7-140 1.34e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 44.27  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   7 IAAIQSWRNNQQNLSNSQKsleKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQT----------- 75
Cdd:PRK12687   11 MTALQTLRNVSSSLATTQN---RISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTmytaltsvvgd 87

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1099451914  76 AEGGMVELHSLLQRGRELSVqaanetntveDREQIQKEIAQIKEETDRIANTTEFNTMKLLNVAS 140
Cdd:PRK12687   88 SKSGLTALKAKLVAAREPGI----------DRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVDS 142
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-127 1.89e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 43.47  E-value: 1.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAG----LSISEKMRGqirgLEQAERNIQDGISLIQTA 76
Cdd:PRK07192    1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIAsarlLELSREQSN----NSQYADNIANLSNSLNNQ 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1099451914  77 EGGMVELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANT 127
Cdd:PRK07192   77 EGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANA 127
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 1-128 2.05e-04

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 44.04  E-value: 2.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   1 MRINNNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDGISLIQTAEGGM 80
Cdd:PRK08412    1 MRVTFGSKYNQMNNYQNALQNKLNDVNTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKAL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1099451914  81 VELHSLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTT 128
Cdd:PRK08412   81 NEFSKTMEAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLANTS 128
CusB_dom_1 pfam00529
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ...
 5-128 1.77e-03

Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.


Pssm-ID: 425733 [Multi-domain]  Cd Length: 322  Bit Score: 40.48  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914   5 NNIAAIQSWRNNQQNLSNSQKSLEKLSSGLRINRAGDDAAGLSISEKMRGQIRGLEQAERNIQDgisLIQTAEGGMVELH 84
Cdd:pfam00529  65 AQLAKAQAQVARLQAELDRLQALESELAISRQDYDGATAQLRAAQAAVKAAQAQLAQAQIDLAR---RRVLAPIGGISRE 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1099451914  85 SLLQRGRELSVQAANETNTVEDREQIQKEIAQIKEETDRIANTT 128
Cdd:pfam00529 142 SLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSE 185
PRK12687 PRK12687
flagellin; Reviewed
 457-543 2.47e-03

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 40.03  E-value: 2.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1099451914 457 IGQFDTAITVVSSERSRLGAIQNRLEHALSISMSNRENLTSSESRIRDLDMAKEMMNMTKTNILMQASAAMLAQANQNPQ 536
Cdd:PRK12687  225 IGIVDQALGSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQ 304


                  ....*..
gi 1099451914 537 GILQMLR 543
Cdd:PRK12687  305 SILSLFK 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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