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Conserved domains on  [gi|1097299029|emb|SFB11500|]
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flagellin [Selenomonas ruminantium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
flagella_HExxH super family cl41492
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 265-518 7.35e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


The actual alignment was detected with superfamily member NF033876:

Pssm-ID: 468217  Cd Length: 380  Bit Score: 160.51  E-value: 7.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 265 NSDVERAILGALDNPWLQNCIDLIDESYALNFwekgtSVRTMDVKLAN-EGQNGTLAYVTSSIS-GGVTTGLTMTINMDY 342
Cdd:NF033876   36 ADPDKQAILDGLKSGWLENAEDLIKEYYGLTA-----DGADLTVNLEYtDGAGGTLAYVSSGSGgGGKGGNLTLTIDMAD 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 343 YSSLDVNDWNGkasgGAGYLDRTIAHEMVHALMSANIkNFSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASDPDALKNVL 422
Cdd:NF033876  111 FSPANLPNGGT----APQYLDRTIAHEMVHAVMGRTM-NFSSLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAALF 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 423 QDSAAASGDQAYAAGYMILRYLAKQ------------------------------------------------------- 447
Cdd:NF033876  186 NGGAWTSTSADYSAGYAAVRYLHDQikaaggggikdimqylkanagstldqalaaatggafateadfladfnangaafik 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 448 ----------------SADGEPEKH---------------------------------LVFQTGTKANQSTRVGLADMRC 478
Cdd:NF033876  266 nymdltnadtgaigglDADGGPVLTaesvvpdtgsypgedplsgfnviwptfsgagttVQLQVGANAGQTIEISFGDMSA 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1097299029 479 KALGLEKsdgtmVSVTTQelANSAITVIDRAIGRALKQQT 518
Cdd:NF033876  346 EALGLDD-----VDVSTD--ATSAIDIFDKALDYVSNQRA 378
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-181 1.28e-35

Flagellin and related hook-associated protein FlgL [Cell motility];


:

Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 133.84  E-value: 1.28e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGrgivadpwDAMASFMSYLD 161
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTdFNGRYLFAGTAT--------DTPPFQVDYQG 152

                         170       180
                  ....*....|....*....|.
gi 1097299029 162 NADTDT-AQEALDGAIKYVSG 181
Cdd:COG1344   153 DAGQRTaALGALDAALDNVSS 173
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
485-579 8.14e-18

Flagellin and related hook-associated protein FlgL [Cell motility];


:

Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 82.99  E-value: 8.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 485 KSDGTMVSVTTQ---ELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYT 561
Cdd:COG1344   140 ATDTPPFQVDYQgdaGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLT 219

                          90
                  ....*....|....*...
gi 1097299029 562 KNNVLMQAAQSMLAQANQ 579
Cdd:COG1344   220 KLQTLLQAALAALAQANQ 237
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 265-518 7.35e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 160.51  E-value: 7.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 265 NSDVERAILGALDNPWLQNCIDLIDESYALNFwekgtSVRTMDVKLAN-EGQNGTLAYVTSSIS-GGVTTGLTMTINMDY 342
Cdd:NF033876   36 ADPDKQAILDGLKSGWLENAEDLIKEYYGLTA-----DGADLTVNLEYtDGAGGTLAYVSSGSGgGGKGGNLTLTIDMAD 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 343 YSSLDVNDWNGkasgGAGYLDRTIAHEMVHALMSANIkNFSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASDPDALKNVL 422
Cdd:NF033876  111 FSPANLPNGGT----APQYLDRTIAHEMVHAVMGRTM-NFSSLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAALF 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 423 QDSAAASGDQAYAAGYMILRYLAKQ------------------------------------------------------- 447
Cdd:NF033876  186 NGGAWTSTSADYSAGYAAVRYLHDQikaaggggikdimqylkanagstldqalaaatggafateadfladfnangaafik 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 448 ----------------SADGEPEKH---------------------------------LVFQTGTKANQSTRVGLADMRC 478
Cdd:NF033876  266 nymdltnadtgaigglDADGGPVLTaesvvpdtgsypgedplsgfnviwptfsgagttVQLQVGANAGQTIEISFGDMSA 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1097299029 479 KALGLEKsdgtmVSVTTQelANSAITVIDRAIGRALKQQT 518
Cdd:NF033876  346 EALGLDD-----VDVSTD--ATSAIDIFDKALDYVSNQRA 378
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-181 1.28e-35

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 133.84  E-value: 1.28e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGrgivadpwDAMASFMSYLD 161
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTdFNGRYLFAGTAT--------DTPPFQVDYQG 152

                         170       180
                  ....*....|....*....|.
gi 1097299029 162 NADTDT-AQEALDGAIKYVSG 181
Cdd:COG1344   153 DAGQRTaALGALDAALDNVSS 173
PRK12806 PRK12806
flagellin; Provisional
 1-578 2.09e-32

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 130.58  E-value: 2.09e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK12806    1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGRGIVADPWDAMASFMSY 159
Cdd:PRK12806   81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTeFNGQRILDGSFSGASFQVGANSNQTINFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LDNADTDTAQEALDGAIKYVSGGMFDNEEALISSFINDITNSGLAACGIILDNDDTGAITGKDAQNEVVKTAESVVPEKH 239
Cdd:PRK12806  161 IGSIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 240 YPYGGNPTGGTS-RIRGLTVNwpdSVNSDVERAILGALDNPWLQNCIDlidesyalnfwekgtsvrtmdvklANEGQNGt 318
Cdd:PRK12806  241 GTQAVGAIGGTAgDTYNLTIN---GVAIYTNLDVATALTNSDLRDAIN------------------------GVSNQTG- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 319 layVTSSISGGVTTgltmtinmdyyssldvndwngkasggagyldrtiahemvhaLMSANIKNFSnlpkyIKEGAAEVVH 398
Cdd:PRK12806  293 ---VVASLNGGNMT-----------------------------------------LTAADGRNIT-----VTESGTGFTA 323

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 399 GIDdfrrstiaGLASDPDALKNVLQDSAAASGDQAYAAGYMILrylakqsadgepekhlvfQTGTKANQSTRVGLADmrc 478
Cdd:PRK12806  324 GTD--------GLTVTGGAFDGALRGTLSISAVDTIAIGGTVA------------------NIGLSANISKDTVGID--- 374

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 479 kalgleksdgtMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMT 558
Cdd:PRK12806  375 -----------SLDVSTASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMA 443

                         570       580
                  ....*....|....*....|
gi 1097299029 559 GYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK12806  444 SLTKNQILQQAGTAMLAQAN 463
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-141 4.04e-29

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 112.44  E-value: 4.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   5 IKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSS 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1097299029  85 TVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQ 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIAnTTSFNGEYLLAGIN 138
PRK12802 PRK12802
flagellin; Provisional
 1-142 1.37e-26

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 109.58  E-value: 1.37e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQG 142
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIAtSTTLNGKNLLDGSAG 143
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
485-579 8.14e-18

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 82.99  E-value: 8.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 485 KSDGTMVSVTTQ---ELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYT 561
Cdd:COG1344   140 ATDTPPFQVDYQgdaGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLT 219

                          90
                  ....*....|....*...
gi 1097299029 562 KNNVLMQAAQSMLAQANQ 579
Cdd:COG1344   220 KLQTLLQAALAALAQANQ 237
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 13-142 8.43e-16

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 78.54  E-value: 8.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  13 NALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDILKTF 92
Cdd:TIGR02550  10 NSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVLQRA 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1097299029  93 KEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQG 142
Cdd:TIGR02550  90 RELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLAnTKDGNGRYIFSGTKT 140
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 503-579 2.34e-15

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 71.21  E-value: 2.34e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1097299029 503 ITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQ 77
PRK12807 PRK12807
flagellin; Provisional
 463-579 5.42e-14

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 72.93  E-value: 5.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 463 TKANQSTRVGLADMRCKALGLEkSDGTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVA 542
Cdd:PRK12807  162 SATNQQITIKLANTTAEKLGID-ATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMA 240

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1097299029 543 SSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:PRK12807  241 SAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQ 277
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 458-579 5.42e-04

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 42.34  E-value: 5.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 458 VFQTGTKANQSTRVGLADMRCKalgLEKSDGTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTA 537
Cdd:TIGR02550 181 VFMSIPNNDKSVFSTGDDLIDA---LKKLEDALSSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQ 257

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1097299029 538 HENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:TIGR02550 258 KLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
 
Name Accession Description Interval E-value
flagella_HExxH NF033876
flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally ...
 265-518 7.35e-44

flagellinolysin; Flagellinolysin is a variant form of bacterial flagellin in with the normally hypervariable central region contains an M9 (MEROPS classification) family metalloprotease domain, with its signature HExxH motif. The founding member of the family, from the pathogen Clostridium haemolyticum, shows EDTA-sensitive metalloprotease activity. The large count of flagellin subunits in a complete flagellum means the capacity of flagellinolysin to perform as a protease may have implications for host-pathogen relationships.


Pssm-ID: 468217  Cd Length: 380  Bit Score: 160.51  E-value: 7.35e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 265 NSDVERAILGALDNPWLQNCIDLIDESYALNFwekgtSVRTMDVKLAN-EGQNGTLAYVTSSIS-GGVTTGLTMTINMDY 342
Cdd:NF033876   36 ADPDKQAILDGLKSGWLENAEDLIKEYYGLTA-----DGADLTVNLEYtDGAGGTLAYVSSGSGgGGKGGNLTLTIDMAD 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 343 YSSLDVNDWNGkasgGAGYLDRTIAHEMVHALMSANIkNFSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASDPDALKNVL 422
Cdd:NF033876  111 FSPANLPNGGT----APQYLDRTIAHEMVHAVMGRTM-NFSSLPTWFIEGTAEFIHGADERLAADLAGGTSDAAGVAALF 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 423 QDSAAASGDQAYAAGYMILRYLAKQ------------------------------------------------------- 447
Cdd:NF033876  186 NGGAWTSTSADYSAGYAAVRYLHDQikaaggggikdimqylkanagstldqalaaatggafateadfladfnangaafik 265

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 448 ----------------SADGEPEKH---------------------------------LVFQTGTKANQSTRVGLADMRC 478
Cdd:NF033876  266 nymdltnadtgaigglDADGGPVLTaesvvpdtgsypgedplsgfnviwptfsgagttVQLQVGANAGQTIEISFGDMSA 345

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1097299029 479 KALGLEKsdgtmVSVTTQelANSAITVIDRAIGRALKQQT 518
Cdd:NF033876  346 EALGLDD-----VDVSTD--ATSAIDIFDKALDYVSNQRA 378
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
3-181 1.28e-35

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 133.84  E-value: 1.28e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGrgivadpwDAMASFMSYLD 161
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTdFNGRYLFAGTAT--------DTPPFQVDYQG 152

                         170       180
                  ....*....|....*....|.
gi 1097299029 162 NADTDT-AQEALDGAIKYVSG 181
Cdd:COG1344   153 DAGQRTaALGALDAALDNVSS 173
PRK12806 PRK12806
flagellin; Provisional
 1-578 2.09e-32

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 130.58  E-value: 2.09e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK12806    1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGRGIVADPWDAMASFMSY 159
Cdd:PRK12806   81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTeFNGQRILDGSFSGASFQVGANSNQTINFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LDNADTDTAQEALDGAIKYVSGGMFDNEEALISSFINDITNSGLAACGIILDNDDTGAITGKDAQNEVVKTAESVVPEKH 239
Cdd:PRK12806  161 IGSIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSANFTGALNGQDATSAYAKAAAINDAGIGGLSVTASTS 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 240 YPYGGNPTGGTS-RIRGLTVNwpdSVNSDVERAILGALDNPWLQNCIDlidesyalnfwekgtsvrtmdvklANEGQNGt 318
Cdd:PRK12806  241 GTQAVGAIGGTAgDTYNLTIN---GVAIYTNLDVATALTNSDLRDAIN------------------------GVSNQTG- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 319 layVTSSISGGVTTgltmtinmdyyssldvndwngkasggagyldrtiahemvhaLMSANIKNFSnlpkyIKEGAAEVVH 398
Cdd:PRK12806  293 ---VVASLNGGNMT-----------------------------------------LTAADGRNIT-----VTESGTGFTA 323

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 399 GIDdfrrstiaGLASDPDALKNVLQDSAAASGDQAYAAGYMILrylakqsadgepekhlvfQTGTKANQSTRVGLADmrc 478
Cdd:PRK12806  324 GTD--------GLTVTGGAFDGALRGTLSISAVDTIAIGGTVA------------------NIGLSANISKDTVGID--- 374

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 479 kalgleksdgtMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMT 558
Cdd:PRK12806  375 -----------SLDVSTASGAQTAIKRIDAALNSVNSNRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMA 443

                         570       580
                  ....*....|....*....|
gi 1097299029 559 GYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK12806  444 SLTKNQILQQAGTAMLAQAN 463
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-141 4.04e-29

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 112.44  E-value: 4.04e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   5 IKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSS 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1097299029  85 TVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQ 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIAnTTSFNGEYLLAGIN 138
PRK08869 PRK08869
polar flagellin E;
2-579 7.79e-29

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 118.11  E-value: 7.79e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   2 SMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGA 81
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  82 VSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLD---GTQGRGIVADPWDAMAsfm 157
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTsFGGTKLLNgsfGTKSFQIGANSGEAVS--- 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 158 syLDNADTDTAQEALDGAikyvsggMFDNEEALISSfindiTNSGLAACGIILDNDDTGAitgkDAQNEVVKTAESVVPE 237
Cdd:PRK08869  158 --LDLKSMRSDAKIMGGV-------SYDAEGGADKD-----WTVGAGNTDLNVSFDDKGG----ETQAITINAKAGDDIE 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 238 KHYPYGGNPTGGTSRirgltvnwpdSVNSDVERAILGAldnpwlqncidlidesyalnfwekgtsvrtmdvklanegqnG 317
Cdd:PRK08869  220 ELATYINGQTDGVGA----------SVSEDGKLQLFAA-----------------------------------------G 248

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 318 TLAYVTSSISGGVTTGLTMTinmdyyssldvndwngkasggagyldrtiahemvhalmsaniknfsnlpkyikEGAAEVV 397
Cdd:PRK08869  249 QKVSGGVSFSGGLAAELGLG-----------------------------------------------------NATAVTV 275

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 398 HGIDdfrrstiaglasdpdalknvlqdsaaasgdqayaagymilrylakqsadgepekhlvfqtgtkanqstrvgladmr 477
Cdd:PRK08869  276 DDLD---------------------------------------------------------------------------- 279

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 478 ckalgleksdgtmvsVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEM 557
Cdd:PRK08869  280 ---------------ISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKET 344

                         570       580
                  ....*....|....*....|..
gi 1097299029 558 TGYTKNNVLMQAAQSMLAQANQ 579
Cdd:PRK08869  345 TELTKAQILQQAGTSILAQAKQ 366
PRK12802 PRK12802
flagellin; Provisional
 1-142 1.37e-26

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 109.58  E-value: 1.37e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQG 142
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIAtSTTLNGKNLLDGSAG 143
PRK12804 PRK12804
flagellin; Provisional
 3-140 1.73e-26

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 109.70  E-value: 1.73e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAAND-TNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGT 140
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNTgTQDGTDLGAIQDEIKALVDEIDGISDRTeFNGKKLLDGT 140
PRK12804 PRK12804
flagellin; Provisional
 446-579 8.59e-25

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 104.70  E-value: 8.59e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 446 KQSADGEPEKHLVFQTGTKANQSTRVGLADMRCKALGLEKSDGTMVSVTT------QELANSAIT----------VIDRA 509
Cdd:PRK12804  142 KPAAPAAGTKSLTFQIGANAAQQLSVNIEAMSADALGVKDTDGTLVTGKSvsdidvTKFANAAAAadggfddqlkIVDGA 221

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 510 IGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:PRK12804  222 IKQVSDQRSKLGAVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQ 291
PRK13589 PRK13589
flagellin A;
1-578 1.08e-22

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 102.03  E-value: 1.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK13589    1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGtqgrGIVADPWDAMASFMSY 159
Cdd:PRK13589   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTsFNGKQLLSG----NFTNQEFQIGASSNQT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LdNADTDTAQEALDGAIKYVSGGM-------------------FDNEEALISSFINdiTNSGLAACGIILDNDDTGaitg 220
Cdd:PRK13589  157 I-KATIGATQSSKIGVTRFETGGRsftsgevqltiknyngiddFKFQKVVISTSVG--TGLGALAEEINKSADKTG---- 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 221 kdaqnevVKTAESVVPEKHYPYGGNPTGGTSRIRGLTVNWPDSVNSDVERAILGALDnpwlqncidlidesyalnfwekg 300
Cdd:PRK13589  230 -------VRATFTVETTGVAAIKAGTTSQDFAINGVTIGQVAYKDGDGNGALVSAIN----------------------- 279

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 301 tSVRTMDVKLANEGQNGTLAYVTS-----SISGGVTTGLTMTINM-DYYSSLDVNDWNGK---------ASGGAGYLD-- 363
Cdd:PRK13589  280 -SVKDTTGVEASKDANGQLVLTSRdgrgiKIDGNIGGGAGILANMkENYGRLSLVKNDGKdilisgtnlSAIGMGATDmi 358

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 364 --RTIAHEMVHALMSANIKNFSNLPKYIKEGAAEVVHGIddfrrSTIAGLASDPDALKNVLQDSAAASGdQAYAAGYMIL 441
Cdd:PRK13589  359 sqASVSLRESKGRIDANIADAMGFNSYKGGGKFVVTGGF-----SSVSAFMSSEGSGFSRGSGYSVGSG-KNYSVGLSQG 432

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 442 RYLAKQSADGEPEKHLVFQTGTkANQSTRVGLADMRCKALGLEKSDGtmvSVTTQELANSAITVIDRAIGRALKQQTLIG 521
Cdd:PRK13589  433 IQIISSASAMSTVYNVSAGSGF-SSGSGLSQFATMKTTAAGVKDETA---GVTTLKGAMAVMDIAETAITNLDQIRADIG 508

                         570       580       590       600       610
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1097299029 522 AMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK13589  509 SVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQAN 565
PRK08411 PRK08411
flagellin; Reviewed
 1-578 8.35e-22

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 99.29  E-value: 8.35e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK08411    1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGtqgrGIVADPWDAMASFMSY 159
Cdd:PRK08411   81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTsFNGKQLLSG----NFTNQEFQIGASSNQT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LdNADTDTAQEALDGAIKYVSGGM-------------------FDNEEALISSFINdiTNSGLAACGIILDNDDTGaitg 220
Cdd:PRK08411  157 V-KATIGATQSSKIGVTRFETGARittsgvvqltiknyngiddFKFQNVVISTSVG--TGLGALAEEINKNADKTG---- 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 221 kdaqnevVKTAESVVPEKHYPYGGNPTGGTSRIRGLTVNWPDSVNSDVERAILGALDNPWLQNCIDL-IDESYALNFwek 299
Cdd:PRK08411  230 -------VRATFDVETTGVAAIKAGTTSDDFAINGVTIGKVEYKDGDGNGALVAAINSVKDTTGVEAsIDENGKLVL--- 299

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 300 gTSVRTMDVKlanegqngtlayVTSSISGGVTTGLTMTINMDYYS--SLDVNDWN----GKASGGAGYLDR----TIAHE 369
Cdd:PRK08411  300 -TSRDGRGIK------------IDGDIGGGSGILANMKENYGRLSlvKNDGKDILisgtNLSFAGMGATDMisqaSVSLR 366

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 370 MVHALMSANIKNFSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASdpdalknvlqdsaaASGDQAYAAGYMILRYLAKQSA 449
Cdd:PRK08411  367 ESKGQIDANVADAMGFNSYKGGVMIQGFSSVSAFMSSEGSGFSQ--------------GSGYSVGSGKNYSVGLSSGIQI 432

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 450 DGEPEKHLVFQTGTKANQSTRVGLADMRCKALGLEKSDGTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEF 529
Cdd:PRK08411  433 SSASAMSTVYVVSAGSGFSSGSNLSQFAAMKTTAANVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTS 512

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*....
gi 1097299029 530 TAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK08411  513 TINNITVTQVNVKAAESQIRDVDFAAESANYSKANILAQSGSYAMAQAN 561
PRK13588 PRK13588
flagellin B; Provisional
 1-578 3.04e-20

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 94.16  E-value: 3.04e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK13588    1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTqgrgivadpwdamASFMSY 159
Cdd:PRK13588   81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTsFNGQQMLSGS-------------FSNKEF 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LDNADTDTAQEALDGA-----IKYV--SGGMFDNEEALISSFINDITNSGLAACGIILDND--------DTGAITGKDAQ 224
Cdd:PRK13588  148 QIGAYSNTTVKASIGAtssdkIGHVrmETSSFSGEGMLASAAAQNLTEVGLNFKQVDGVNDykietvriSTSAGTGIGAL 227

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 225 NEVVKTAESVVPEKHyPYGGNPTGGTS----RIRGLTVN------WPDSVNSDVERAILGALDNPWLQNCIDL-IDESYA 293
Cdd:PRK13588  228 SEIINRFSDTLGVRA-SYNVMATGGTPvqsgTVRELTINgveigtVNDVHKNDADGRLINAINSVKDRTGVEAsLDIQGR 306

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 294 LNFweKGTSVRTMDVKLANEgqngtlayvTSSISGGVTTGLTMTINMDYYSSLDvndwngkasggagyLDRTIAHEMVha 373
Cdd:PRK13588  307 INL--TSIDGRAISVHAASA---------SGQVFGGGNFAGISGTQHAVVGRLT--------------LTRTDARDII-- 359

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 374 lMSAniKNFSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASDPDALKNVLQDSAAAsgdQAYAAGYMILRylakqsadgep 453
Cdd:PRK13588  360 -VSG--VNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNS---QGIGAGVTSLK----------- 422

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 454 ekhlvfqtgtkanqstrvgladmrckalgleksdGTMVsvtTQELANSAITVIDraigralKQQTLIGAMESRLEFTAAN 533
Cdd:PRK13588  423 ----------------------------------GAMI---VMDMAESARTQLD-------KIRSDMGSVQMQLVSTINN 458

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*
gi 1097299029 534 LTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK13588  459 ISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQAN 503
PRK12807 PRK12807
flagellin; Provisional
 3-208 5.33e-20

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 90.65  E-value: 5.33e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGRGIVADPWDAMASFMSYLD 161
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTeFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 1097299029 162 NADTDTAQEALDGAIKYVSGGMFDNEEaliSSFINDITNSGLAACGI 208
Cdd:PRK12807  161 SSATNQQITIKLANTTAEKLGIDATTS---NISISGAASALAAISAL 204
PRK12584 PRK12584
flagellin A; Reviewed
 1-578 5.97e-20

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 93.43  E-value: 5.97e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK12584    1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTqgrgiVADPWDAMASFMSY 159
Cdd:PRK12584   81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTtYNGQALLSGQ-----FTNKEFQVGAYSNQ 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 160 LDNADTDTAQEALDGAIKYVSGGMFDNEEALISSF-----INDITNSGL-----AACGI------ILDNDDTgaiTGKDA 223
Cdd:PRK12584  156 SIKASIGSTTSDKIGQVRIATGALITASGDISLTFkqvdgVNDVTLESVkvsssAGTGIgvlaevINKNSDR---TGVKA 232

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 224 QNEVVKTAESVVPekhypyGGNPTGGTsrIRGLTV-NWPDSVNSDVERAILGALDNPWLQNCIDL-IDESYALNFweKGT 301
Cdd:PRK12584  233 YASVITTSDVAVQ------SGSLSNLT--LNGIHIgNIADIKKNDSDGRLVAAINAVTSETGVEAyTDQKGRLNL--RSI 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 302 SVRTMDVKlANEGQNGTLAYVTssISGGVTTGltmtinmdyyssldvndwNGKASGGAGYLDRTIAHEMVHALMSANIKN 381
Cdd:PRK12584  303 DGRGIEIK-TDSVSNGPSALTM--VNGGQDLT------------------KGSTNYGRLSLTRLDARDINVVSASDSQHL 361

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 382 FSNLPKYIKEGAAEVVHGIDDFRRSTIAGLASDPDALKNvlqdSAAASGDQAYAAGYMILRylakqsadgepekhlvfqt 461
Cdd:PRK12584  362 GFSAIGFGESQVAETTVNLRDVTGNFNANVKSASGANYN----AVIASGNQSLGSGVTTLR------------------- 418

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 462 gtkanqstrvgladmrckalgleksdGTMVSVttqELANSAITVIDraigralKQQTLIGAMESRLEFTAANLTTAHENV 541
Cdd:PRK12584  419 --------------------------GAMVVM---DIAESAMKMLD-------KVRSDLGSVQNQMISTVNNISITQVNV 462

                         570       580       590
                  ....*....|....*....|....*....|....*..
gi 1097299029 542 ASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQAN 578
Cdd:PRK12584  463 KAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQAN 499
PRK12808 PRK12808
flagellin; Provisional
 12-579 1.11e-18

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 89.24  E-value: 1.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  12 INALNT---LNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDI 88
Cdd:PRK12808    7 INSMRTqeyMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNSVSNI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  89 LKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQGRGIvadpwdamasfmSYLDNADTDt 167
Cdd:PRK12808   87 LLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTqFNDKNLLNSNSSINI------------QTLDSSDGD- 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 168 aqEALDGAIKYVSggmfdneeaLISSFINDITnsglaacgiildnddtgaITGKDAQNEVVKtaesvvpekhypyggnpt 247
Cdd:PRK12808  154 --KQIGIDLKSAT---------LEALGINDLS------------------IGANTDIEAVST------------------ 186

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 248 ggtsRIRGLTVNWPDSVNSDVERAILGALDnpwlqncidlidesyalnfwekgtsvrtmdvklanegqnGTLAYVTSSIS 327
Cdd:PRK12808  187 ----KIAALDKNTIAKATVEAKAAFDKAKD---------------------------------------DTKAEDSNILD 223

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 328 GGVTTGLTMTINMDYYSSLDVNDWNGKASGGAGYLDRTIAHEMVHALMSANIKNFSNLPKYIKEGAAEVvhgIDDFRRST 407
Cdd:PRK12808  224 AAADGFKDGKADDAAKDVEAIKTALSAFTGAATLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADL---DTAKTTST 300

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 408 IAGLASDpdaLKNVLQDSAAASGDQAYAAGYMILRYLAKQSADGEPEKHLVFQTGTKANQSTRVGLAdmrCKALGLEKSD 487
Cdd:PRK12808  301 RSKAAKD---LVAAYDKAKSGAKPNDVAKAYLEAKMAYEKDNNAIDGKSKLEAADDALEKDAIKTDA---SKVLVPKLEA 374

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 488 GTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLM 567
Cdd:PRK12808  375 AKKATTNSKADSLDAVKAIDEALKTVADNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILN 454

                         570
                  ....*....|..
gi 1097299029 568 QAAQSMLAQANQ 579
Cdd:PRK12808  455 EAGISMLSQANQ 466
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
485-579 8.14e-18

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 82.99  E-value: 8.14e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 485 KSDGTMVSVTTQ---ELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYT 561
Cdd:COG1344   140 ATDTPPFQVDYQgdaGQRTAALGALDAALDNVSSARAELGARQNRLESAINNLSDLSENLTAALSRLEDADMAEAITRLT 219

                          90
                  ....*....|....*...
gi 1097299029 562 KNNVLMQAAQSMLAQANQ 579
Cdd:COG1344   220 KLQTLLQAALAALAQANQ 237
PRK12803 PRK12803
flagellin; Provisional
 3-123 5.37e-17

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 82.55  E-value: 5.37e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK12803    1 MIINHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQI 123
Cdd:PRK12803   81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEI 121
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 3-141 7.61e-17

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 81.58  E-value: 7.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK07701    1 MRVTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVTFNGKSLLDGTQ 141
Cdd:PRK07701   81 DQATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQYNGRYIFNGTK 139
PRK06819 PRK06819
FliC/FljB family flagellin;
1-139 8.68e-17

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 82.52  E-value: 8.68e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK06819    1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDG 139
Cdd:PRK06819   81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTqFNGVKVLAE 140
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 13-142 8.43e-16

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 78.54  E-value: 8.43e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  13 NALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDILKTF 92
Cdd:TIGR02550  10 NSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSSVGDVLQRA 89

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1097299029  93 KEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQG 142
Cdd:TIGR02550  90 RELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLAnTKDGNGRYIFSGTKT 140
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 503-579 2.34e-15

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 71.21  E-value: 2.34e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1097299029 503 ITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQ 77
PRK12807 PRK12807
flagellin; Provisional
 463-579 5.42e-14

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 72.93  E-value: 5.42e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 463 TKANQSTRVGLADMRCKALGLEkSDGTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVA 542
Cdd:PRK12807  162 SATNQQITIKLANTTAEKLGID-ATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNNQATNMA 240

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1097299029 543 SSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:PRK12807  241 SAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQ 277
PRK08026 PRK08026
FliC/FljB family flagellin;
1-140 1.14e-12

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 70.54  E-value: 1.14e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   1 MSMVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEG 80
Cdd:PRK08026    1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1097299029  81 AVSSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLL--DGT 140
Cdd:PRK08026   81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTqFNGVNVLakDGS 143
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
3-167 2.22e-11

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 66.91  E-value: 2.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK14692    1 MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVTFNGKSLLDGTQgrgIVADPWDAMASFMSYLDN 162
Cdd:PRK14692   81 QDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQ---VANKPFDSNGNYYGDKNN 157


                  ....*
gi 1097299029 163 ADTDT 167
Cdd:PRK14692  158 INVVT 162
PRK12805 PRK12805
FliC/FljB family flagellin;
3-140 2.36e-11

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 64.89  E-value: 2.36e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGT 140
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTnYNNIKLLDQT 139
PRK06663 PRK06663
flagellar hook-associated protein 3;
3-140 3.51e-11

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 65.48  E-value: 3.51e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK06663    2 MRVSHPMQYNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYL 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGT 140
Cdd:PRK06663   82 QSITNILQRARELAVQGANGTYQADDKKKIAKEIDELLEDLVDIAnARGADGYSIFSGT 140
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 3-142 1.26e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 62.73  E-value: 1.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK07192    1 MRISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLLDGTQG 142
Cdd:PRK07192   81 SGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLAnAKDSEGNYLFSGTAS 141
PRK12802 PRK12802
flagellin; Provisional
 459-579 2.08e-10

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 61.82  E-value: 2.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 459 FQTGTKANQSTRVGLA-DMRCKALGLEKSDGTMV----SVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAAN 533
Cdd:PRK12802  147 FQVGANTGQSNQITFGlSASFDATGLGVGSGTLItgadSAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTISN 226

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1097299029 534 LTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:PRK12802  227 LQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQ 272
PRK12803 PRK12803
flagellin; Provisional
 491-579 2.91e-10

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 62.13  E-value: 2.91e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 491 VSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQAA 570
Cdd:PRK12803  237 VNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSA 316


                  ....*....
gi 1097299029 571 QSMLAQANQ 579
Cdd:PRK12803  317 MAMIAQANQ 325
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 15-142 6.75e-09

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 58.00  E-value: 6.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  15 LNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDILKTFKE 94
Cdd:PRK08870   13 VNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARE 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1097299029  95 KAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVT-FNGKSLLDGTQG 142
Cdd:PRK08870   93 LVVQAGNGSLSDSDRQAIATELQGLRDQLLNLANSKdGSGNYLFAGTQS 141
flgL PRK12717
flagellar hook-associated protein 3;
20-123 9.08e-09

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 58.21  E-value: 9.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  20 QNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDILKTFKEKAINA 99
Cdd:PRK12717   18 RNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSA 97

                          90       100
                  ....*....|....*....|....
gi 1097299029 100 ANDTNTDNDRATIQKELNQYMSQI 123
Cdd:PRK12717   98 GNGGLTDADRKAIASELKQIEAQL 121
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 16-140 2.42e-07

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 53.67  E-value: 2.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029  16 NTLNQNADALSKSL----QKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTVDILKT 91
Cdd:PRK08412   10 NQMNNYQNALQNKLndvnTQIASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTMEA 89

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1097299029  92 FKEKAINAANDTNTDNDRATIQKELNQYMSQIEDNAAVTFNGKSLLDGT 140
Cdd:PRK08412   90 FKTKLIQAANDVHSETSREAIANDLEALKEHMINLANTSIGGEFLFSGS 138
PRK12805 PRK12805
FliC/FljB family flagellin;
489-579 2.44e-07

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 52.56  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 489 TMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGYTKNNVLMQ 568
Cdd:PRK12805  186 SALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQ 265

                          90
                  ....*....|.
gi 1097299029 569 AAQSMLAQANQ 579
Cdd:PRK12805  266 TSISMLSQANQ 276
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 458-579 5.42e-04

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 42.34  E-value: 5.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 458 VFQTGTKANQSTRVGLADMRCKalgLEKSDGTMVSVTTQELANSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTA 537
Cdd:TIGR02550 181 VFMSIPNNDKSVFSTGDDLIDA---LKKLEDALSSGDAKAALSASLNDLDKALDNVLSARAEVGARLNRLENLNSRLSEQ 257

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1097299029 538 HENVASSESVIRDADMAKEMTGYTKNNVLMQAAQSMLAQANQ 579
Cdd:TIGR02550 258 KLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 482-576 5.52e-04

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 42.59  E-value: 5.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029 482 GLEKSDGTMVSVTTQELA-NSAITVIDRAIGRALKQQTLIGAMESRLEFTAANLTTAHENVASSESVIRDADMAKEMTGY 560
Cdd:PRK08870  299 ALESPVSTPAADAALQNAlAQALRNLDNALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEF 378

                          90
                  ....*....|....*.
gi 1097299029 561 TKNNVLMQAAQSMLAQ 576
Cdd:PRK08870  379 ELQQAALQAAQQAFSK 394
PRK12687 PRK12687
flagellin; Reviewed
 8-137 4.78e-03

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 39.26  E-value: 4.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   8 NKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAVSSTV- 86
Cdd:PRK12687    7 NTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTSVVg 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1097299029  87 ---DILKTFKEKAINAandTNTDNDRATIQKELNQYMSQIEDNA-AVTFNGKSLL 137
Cdd:PRK12687   87 dskSGLTALKAKLVAA---REPGIDRTKIQSEITAIQNDLKNTAgLAVFNGENWL 138
flgL PRK08073
flagellar hook-associated protein 3;
3-135 5.29e-03

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 39.19  E-value: 5.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1097299029   3 MVIKNNKEAINALNTLNQNADALSKSLQKVSTGMKINGAADDASGYAISERMRVQLRSLEADIANTQNATSLLKTAEGAV 82
Cdd:PRK08073    1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1097299029  83 SSTVDILKTFKEKAINAANDTNTDNDRATIQKELNQYMSQI------EDNAAVTFNGKS 135
Cdd:PRK08073   81 SGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVvylantKEQGRYVFGGDS 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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