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Conserved domains on  [gi|1082303962|emb|SAR32087|]
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fimbrial protein [Klebsiella variicola]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-186 4.27e-36

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 123.61  E-value: 4.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   1 MKKYsrgMASFVVMMMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC 78
Cdd:COG3539     1 MKKL---LLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINtgSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  79 TPGAD--VSVYFEKDQYVSTEGRLKNTLSDGteAENVDVELLNTRFTPINLAESPAvaadgtiarpdVIPVAvaeQDGSA 156
Cdd:COG3539    78 DAGTSnsVKVTFTGTADSANPGLLANTGSGG--ASGVGIQLLDSDGTPIPLGTPSS-----------AVTLT---SNGSA 141

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1082303962 157 SLPFYARYYAT-DAATAGKVATYVNFTVVYP 186
Cdd:COG3539   142 TLPFYARYVATgATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-186 4.27e-36

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 123.61  E-value: 4.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   1 MKKYsrgMASFVVMMMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC 78
Cdd:COG3539     1 MKKL---LLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINtgSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  79 TPGAD--VSVYFEKDQYVSTEGRLKNTLSDGteAENVDVELLNTRFTPINLAESPAvaadgtiarpdVIPVAvaeQDGSA 156
Cdd:COG3539    78 DAGTSnsVKVTFTGTADSANPGLLANTGSGG--ASGVGIQLLDSDGTPIPLGTPSS-----------AVTLT---SNGSA 141

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1082303962 157 SLPFYARYYAT-DAATAGKVATYVNFTVVYP 186
Cdd:COG3539   142 TLPFYARYVATgATVTAGSFNATATFTIDYQ 172
FimA pfam16970
Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins ...
 51-186 9.32e-17

Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.


Pssm-ID: 339870  Cd Length: 145  Bit Score: 73.22  E-value: 9.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  51 LPTVQRSVLSSAGETAGVVPFTIDLTSCTPGAD----VSVYFEKDQYVS-TEGRLKNTLSDGTEAEnVDVELLNTRFTPI 125
Cdd:pfam16970   1 LPTISNKALADPGETAGGTPFDIKLTECPQALDgaghVGAFFEPGGSTDfTSGNLFAIAADNAAGD-EQIPLLKADGTQA 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1082303962 126 NLAESpAVAADGTIARPDVIPVAVAEQDGS----ASLPFYARYYATDAAT--AGKVATYVNFTVVYP 186
Cdd:pfam16970  80 NLDGS-AIFLGKDFAAQAAHTFLVSETAGGdgygATLRYLACYIASGAGSivAGNLKSQVGFSIAYE 145
PRK09934 PRK09934
fimbriae assembly protein;
6-167 6.52e-15

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 68.76  E-value: 6.52e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   6 RGMASFVVMMMLSPVA-AQAADGKVTFN--GEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSCTP 80
Cdd:PRK09934    3 RVFFACFCGLLWSPLSwAADPLGEINIElhGNVVDFTCTVNtaDSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCPP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  81 GAdVSVYFEKdqyVSTEGRLKNTLSDGTEAENVDVELLNTRFTPINLAE-SPAVAADgtiarpdvipvavaeQDGSASLP 159
Cdd:PRK09934   83 GS-ASITFTG---TPASDTNLLALDDPAMAQTVAIEIRDSDRSRLALGQaSPTVEVD---------------ANGNATLN 143


                  ....*...
gi 1082303962 160 FYARYYAT 167
Cdd:PRK09934  144 FYANYIAL 151
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-186 4.27e-36

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 123.61  E-value: 4.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   1 MKKYsrgMASFVVMMMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC 78
Cdd:COG3539     1 MKKL---LLALLLALALSAAAAAAADGTVNFTGTVVAPTCTINtgSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNC 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  79 TPGAD--VSVYFEKDQYVSTEGRLKNTLSDGteAENVDVELLNTRFTPINLAESPAvaadgtiarpdVIPVAvaeQDGSA 156
Cdd:COG3539    78 DAGTSnsVKVTFTGTADSANPGLLANTGSGG--ASGVGIQLLDSDGTPIPLGTPSS-----------AVTLT---SNGSA 141

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1082303962 157 SLPFYARYYAT-DAATAGKVATYVNFTVVYP 186
Cdd:COG3539   142 TLPFYARYVATgATVTAGSFNATATFTIDYQ 172
FimA pfam16970
Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins ...
 51-186 9.32e-17

Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.


Pssm-ID: 339870  Cd Length: 145  Bit Score: 73.22  E-value: 9.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  51 LPTVQRSVLSSAGETAGVVPFTIDLTSCTPGAD----VSVYFEKDQYVS-TEGRLKNTLSDGTEAEnVDVELLNTRFTPI 125
Cdd:pfam16970   1 LPTISNKALADPGETAGGTPFDIKLTECPQALDgaghVGAFFEPGGSTDfTSGNLFAIAADNAAGD-EQIPLLKADGTQA 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1082303962 126 NLAESpAVAADGTIARPDVIPVAVAEQDGS----ASLPFYARYYATDAAT--AGKVATYVNFTVVYP 186
Cdd:pfam16970  80 NLDGS-AIFLGKDFAAQAAHTFLVSETAGGdgygATLRYLACYIASGAGSivAGNLKSQVGFSIAYE 145
PRK09934 PRK09934
fimbriae assembly protein;
6-167 6.52e-15

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 68.76  E-value: 6.52e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   6 RGMASFVVMMMLSPVA-AQAADGKVTFN--GEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSCTP 80
Cdd:PRK09934    3 RVFFACFCGLLWSPLSwAADPLGEINIElhGNVVDFTCTVNtaDSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEGCPP 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  81 GAdVSVYFEKdqyVSTEGRLKNTLSDGTEAENVDVELLNTRFTPINLAE-SPAVAADgtiarpdvipvavaeQDGSASLP 159
Cdd:PRK09934   83 GS-ASITFTG---TPASDTNLLALDDPAMAQTVAIEIRDSDRSRLALGQaSPTVEVD---------------ANGNATLN 143


                  ....*...
gi 1082303962 160 FYARYYAT 167
Cdd:PRK09934  144 FYANYIAL 151
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 1-185 7.52e-13

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 63.58  E-value: 7.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   1 MKKYSRGMASFVVMMMLSP--VAAQAADGKVTFNGEVIENTCTVVNKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC 78
Cdd:PRK15300    1 MKLSLKTLTVALAAITLSPaaLADTAKDGTVHITGLIKQNACTVKTDSVEVTLQEEFASLFTAAGQTAGDTDFTIELENC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  79 tpgadvsvyfEKDQYVSTEGRLKNTLsDGT---------EAENVDVELLNTRFTPINLAESPAVAAdgtiarpdviPVAV 149
Cdd:PRK15300   81 ----------DANVYSSVQARFEGTL-DGTdatilknedDAENIGVQILDKTSTPMTFNDLQAWSA----------AVAL 139

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 1082303962 150 AEQDG--SASLPFYARYYATDAAT-AGKVATYVNFTVVY 185
Cdd:PRK15300  140 PTAEGvtELSMPFTARYIATAVPVkSGTVDATATFYLQY 178
lpfA PRK15289
fimbrial protein; Provisional
 22-185 5.52e-12

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 61.51  E-value: 5.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  22 AQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSCtpgadvsvyfeKDQYVSTEGR 99
Cdd:PRK15289   21 ALAEDGVVHFVGEIVDTTCEVTsdTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENC-----------PATYTQAAVR 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962 100 LkntlsDGTEAENVDVELlnTRFTPINlAESP--------AVAADGTIAR----PDVIPVAVAEQ--------DGSASLP 159
Cdd:PRK15289   90 F-----DGTEAPGGDGDL--KVGTPLT-AGNPgdftgtgqAIAATGVGIRifnqSDNSQVKLYNDsaytaidaEGKAEMK 161

                         170       180
                  ....*....|....*....|....*..
gi 1082303962 160 FYARYYATDAA-TAGKVATYVNFTVVY 185
Cdd:PRK15289  162 FIARYVATNATvTAGTANADSQFTVEY 188
PRK15210 PRK15210
fimbrial protein;
18-185 8.54e-10

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 55.47  E-value: 8.54e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  18 SPVAAQAADGKVTFNGEVIENTCTVVNKDKTVTLPTVQRSV--LSSAGETAGVVPFTIDLTSC--------TPG-----A 82
Cdd:PRK15210   26 TPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVPFGQISYrkLNTADATTESKPFTIHLQNCafdpnipdTAGsagkmS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  83 DVSVYFEKDQYVSTegrlKNTLSDGTeAENVDVELLNTRFTPINLAESPAVAADgtiarpdvipvAVAEQDGSASLPFYA 162
Cdd:PRK15210  106 KVTVSFSGTANTSK----KAYTTSGS-AQHVGVQLLKSDNTSIIEPNTPMPDGD-----------AQQLQAGNNELNFFA 169

                         170       180
                  ....*....|....*....|....
gi 1082303962 163 RYYA-TDAATAGKVATYVNFTVVY 185
Cdd:PRK15210  170 RLIAlDNGVTPGDFNASVTYTLKY 193
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
6-172 2.42e-09

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 54.19  E-value: 2.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   6 RGMASFVVMMMLSPVAAQAAD--------GKVTFNGEVIENTCTVVNK--DKTVTLPTVQRSVLSSAGETAGVVPFTIDL 75
Cdd:PRK15194    4 RFISSAIASLLFVAGAAYAADptpvsvdgGTIHFEGELVNAACSVNTDsaDQTVTLGQYRTAIFTAVGNTTALIPFTIQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  76 TSCTP--GADVSVYFEKDQYVSTEGRLKNTLSD-GTEAENVDVELLNTRFTPInlaespavaadgtiaRPDVIPVAVAEQ 152
Cdd:PRK15194   84 NDCDPvvAATAAVAFSGQADATNDNLLAVASSTnTTTATGVGIEILDNTSSIL---------------KPDGATFSANQN 148

                         170       180
                  ....*....|....*....|..
gi 1082303962 153 --DGSASLPFYARYYATDAATA 172
Cdd:PRK15194  149 liEGTNTLHFSARYKATGTSAS 170
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 27-185 7.20e-08

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 50.20  E-value: 7.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  27 GKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVP-FTIDLTSCTP--GADVSVYFEKDQYVSTEGRLK 101
Cdd:PRK15187   32 GTVNFVGQVVDAACSVSadSVDQTVTLGQVRASKLTEAGMVANQKEdFTIKLEDCDTqtSQNAAVIFNGQQDANQPGSLA 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962 102 NTLSDGTeAENVDVELLNTRFTPINLAESPAVaadgtiarpdvipvaVAEQDGSASLPFYARYYATDAATAGKVATYVNF 181
Cdd:PRK15187  112 NTAGAGS-ATNVALQLYGPDGQALNIGESSST---------------VTLNDGENVIPLSVDYIATGTATAGNVTATATF 175


                  ....
gi 1082303962 182 TVVY 185
Cdd:PRK15187  176 SMVY 179
PRK15307 PRK15307
major fimbrial protein StkA; Provisional
 1-185 3.81e-07

major fimbrial protein StkA; Provisional


Pssm-ID: 185207  Cd Length: 201  Bit Score: 48.11  E-value: 3.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   1 MKKYsrGMASFVVM--MMLSPVAAQAADGKVTFNGEVIENTCTVVNKDK--------TVTLPTVQRSVLSSA---GETAG 67
Cdd:PRK15307    3 LKKY--GLAAAVAMtlSASSAMAADPDTGTITFHGLVTNNTCNISLDNKidqdgndfDITLPTVFVKDFATAlgvNSTLG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  68 VVPFTIDLTSCTPG----ADVSVYFEKDQYVSTEGRLKNTLSDGTEAENVDVELLNTRFTPINLAEspavaadgtIARPD 143
Cdd:PRK15307   81 EKQFTLNLSECDNAtlkdASAQFNSWGGSSATSGGLLVPPANLQGSATNVNLVLANNGNTATDLIK---------IDQPN 151

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1082303962 144 VIPVAVAEQDGSASLpFYARYYA--------TDAATAGKVATYVNFTVVY 185
Cdd:PRK15307  152 NTQKATISTDGTGDL-FYRVAYTqgqkwnadTSPVTSGTVQAQVAFTMIY 200
PRK09733 PRK09733
fimbrial-like protein;
8-127 3.90e-07

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 48.02  E-value: 3.90e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   8 MASFVVMMMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSaGETAGVVPFTIDLTSC------T 79
Cdd:PRK09733    7 LVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIKpgDEDLTVNLGEVADTVLKS-DQKSLAEPFTIHLQDCmlsqggT 85

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1082303962  80 PGADVSVYFEKDQYVSTEGRL-KNTLSDGT-EAENVDVELLNTRFTPINL 127
Cdd:PRK09733   86 TYSKAKVTFTTANTMTGQSDLlKNTKETEIgGATGVGVRILDSQSGEVTL 135
PRK15296 PRK15296
fimbrial protein SthA;
12-185 2.26e-06

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 45.85  E-value: 2.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  12 VVMMMLSPVAAQ--AADGKVTFNGEVIENTCTVV---NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSCTPG----- 81
Cdd:PRK15296    7 IILAMLTAVASTpvFAQNTITFNGKIYDQACTVQvngSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAgtgvp 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  82 ADVSVYFEKDQYVSTEGRLKNtLSDGTE--AENVDVELLNtrftpinlaespaVAADGTIARPDVIPVAVAEQDGSASLP 159
Cdd:PRK15296   87 TQAMFRFHGATDDSNPTYFKN-ADEGSEtgAAGVGISIQN-------------ASHSDVTDNTDDAAVNLPTDGSTADFT 152

                         170       180
                  ....*....|....*....|....*...
gi 1082303962 160 FYARYYATDAA--TAGKVATYVNFTVVY 185
Cdd:PRK15296  153 YYAAMANDGSAtvTGGDVSTQVTYTVSY 180
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 15-185 9.92e-06

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 43.94  E-value: 9.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  15 MMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC-TPGADVSVYFEKD 91
Cdd:PRK15191   11 MLLAASGVQAHDGRVYVSGTITDNTCSLSpgSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCgSTASGVTVSFSGA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  92 QYVSTEGRLKNTLSDgTEAENVDVELLNTRFTPINLAESPAVaadgtiarpdvipVAVAEQDGSASLPFYARYYATDAA- 170
Cdd:PRK15191   91 ADSRNTDLLALTAGE-SDASGIGIALYDQNKTLIPLGQESDV-------------VTLSPGQASAHLQFYARYLADGGAv 156

                         170
                  ....*....|....*
gi 1082303962 171 TAGKVATYVNFTVVY 185
Cdd:PRK15191  157 TPGDANASATFILAY 171
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 18-78 3.19e-05

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 42.65  E-value: 3.19e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1082303962  18 SPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGVVPFTIDLTSC 78
Cdd:PRK15209   17 SVFAAESGDGTVKFTGEIVDAPCVVStdSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDC 79
PRK15293 PRK15293
fimbrial protein SthD;
7-186 6.57e-05

fimbrial protein SthD;


Pssm-ID: 185193  Cd Length: 185  Bit Score: 41.58  E-value: 6.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   7 GMASFVVMMMLSPVAAQAADGKVTfnGEVIENTCTVVNKDkTVTLPTVQRSVLSSAGETAGVVPFTIDLTSCTPG-ADVS 85
Cdd:PRK15293   17 GLALWSPSISAAYNTADAVDINVT--GLIYADPCTVTVPD-TLSLGQYARADIAVAGGNTATIPFTIKMTNCPATtTKAA 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  86 VYFEKDQYvsTEGRLKNTL---SDGTEAENVDVELLNTRFTP-INLAESPAVAADgtiarpdvipvaVAEQDGSASLPFY 161
Cdd:PRK15293   94 ISFNGVPY--PDPNYASAIyanSAANPAQDLGLQLFNLDGKSlVNLANNVTYTVD------------INSNTHEANLPVA 159

                         170       180
                  ....*....|....*....|....*.
gi 1082303962 162 ARYYAT-DAATAGKVATYVNFTVVYP 186
Cdd:PRK15293  160 ARMYTPyGKVTAGDFTSVVTITIAWQ 185
Fimbrial pfam00419
Fimbrial protein;
29-186 3.18e-04

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 39.34  E-value: 3.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  29 VTFNGEV--IENTCTVVNKDK-TVTLPTVQRSVLSSAGETAGVVPFTIDLtSCTPGAD---VSVYFEKDQyVSTEGRLKN 102
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPiEVDFGQIPVNELNAGGEGSRQKPFSITL-ECSSGSSavkVTVGLFGTA-DASSPNLLL 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962 103 TLSDGTEAENVDVELLNtrftpinlAESPAVAADGTIARPDVIPVAVAEqdgsASLPFYARYYAT--DAATAGKVATYVN 180
Cdd:pfam00419  79 TGNGAGAATGVGIRLYD--------ANGGALPPNNGTSSIPVSATAAVA----TGITFTASLVATtgGTPTAGDFNATAT 146


                  ....*.
gi 1082303962 181 FTVVYP 186
Cdd:pfam00419 147 IVVDYQ 152
PRK15220 PRK15220
fimbrial protein YehD;
13-184 3.66e-04

fimbrial protein YehD;


Pssm-ID: 237928  Cd Length: 178  Bit Score: 39.41  E-value: 3.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  13 VMMMLSPVAAQAADGKVTFNGEVIENTCTVVNkDKTVTLPTVQRSVLSSAGETAGVV------PFTIDL-TSCTPGADVS 85
Cdd:PRK15220   14 VFMSAGAFAADEDMGELKINGKVVGTTCQFLG-TNSATIELNQVGVDRLANLNPGQIytgytnPTAMPLkVKCTQGAAPR 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  86 VYFEKDQYVSTEGRLKNTLSDGTEAENVDVELLNTRFTP---INLAESPAVaadgtiarpdvipvavaeqDGSASLPFYA 162
Cdd:PRK15220   93 ISFSRSQFVDNMDITKNNGSANGAGFAVYYDGTDVKPDPetgVTLNPNKFE-------------------NGVYTLNFSA 153

                         170       180
                  ....*....|....*....|...
gi 1082303962 163 RYYATDAA-TAGKVATYVNFTVV 184
Cdd:PRK15220  154 RYARVDNDvTSGDVESTLTLTVV 176
PRK15200 PRK15200
type 1 fimbrial protein subunit FimI;
6-186 2.59e-03

type 1 fimbrial protein subunit FimI;


Pssm-ID: 185122  Cd Length: 177  Bit Score: 37.14  E-value: 2.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   6 RGMASFVVMMMLSPVAAQAA---DGKVTFNGEVIENTCTVV--NKDKTVTLPTVQRSVLSSAGETAGV-VPFTIDLTSCT 79
Cdd:PRK15200    3 RKGAALVGLVLMSPVIAQPVmveSGRVHLRGQLVNGGCAVAteSQDLRVLMGQYRTNAFTGPGSFAPVsVPFSLRLISCS 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  80 pgADVSvyfekdqyvSTEGRlknTLSDGTEAENVDVeLLNTRFTPINLAESPAVAADGTIA-RPDVIPVAVAEQDGSA-S 157
Cdd:PRK15200   83 --AEVW---------RHVGI---AFAGVTPAEDPHV-FLASGEGIGNAGIGLALFDDQQRQiIPNTLPLHYAPILTSEmT 147

                         170       180       190
                  ....*....|....*....|....*....|
gi 1082303962 158 LPFYARYYA-TDAATAGKVATYVNFTVVYP 186
Cdd:PRK15200  148 LHFTARYRAiSENMTPGRIHSEVWFTLVYP 177
PRK15261 PRK15261
fimbrial protein SteA; Provisional
 9-185 3.93e-03

fimbrial protein SteA; Provisional


Pssm-ID: 185169  Cd Length: 195  Bit Score: 36.68  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962   9 ASFVVMMMLSPVAAQAADGKVTFNGEVIENTCTVV--NKDKTVTL-PTVQRSVLSSAGETA-GVVPFTIDLTSCTPGADV 84
Cdd:PRK15261   13 ASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTldTEDQTVNMgSSIGNGTLSNGKTTInNARTFHIDLEGCTWATEK 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1082303962  85 SVyfekdQYVSTEGRLKNTLSDGTEaenvDVELLNTRFTPI--NLAESPAVAADGTIARPDVIPVAVAEQDGSA------ 156
Cdd:PRK15261   93 NM-----NVVFTTGSGTTAATGATD----NLALMKTDGTGAisNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTildekq 163

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1082303962 157 SLPFYARYY--ATDAATAGKVATYVNFTVVY 185
Cdd:PRK15261  164 SLNFTAWLVgaATGTVGTGEFSSAANVTISY 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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