NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1524922358|gb|RQP27703|]
View 

electron transfer flavoprotein-ubiquinone oxidoreductase, partial [Burkholderia ubonensis]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11428914)

NAD(P)/FAD-dependent oxidoreductase similar to digeranylgeranylglycerophospholipid reductase, menaquinone reductase, tryptophan 2-halogenase, and protein FixC

CATH:  3.50.50.60|3.40.50.720|3.30.9.10
EC:  1.-.-.-
Gene Ontology:  GO:0000166|GO:0071949|GO:0016491
PubMed:  30945211
SCOP:  3000055

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
1-55 1.54e-11

Dehydrogenase (flavoprotein) [Energy production and conversion];


:

Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 58.83  E-value: 1.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1524922358   1 GALIGDDAGFLNASRIKGSHAAIKTGMLAADAAFDAVQAG-RQADELNAYPDAFKQ 55
Cdd:COG0644   222 VLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGdFSAEALAEYERRLRE 277
 
Name Accession Description Interval E-value
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
1-55 1.54e-11

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 58.83  E-value: 1.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1524922358   1 GALIGDDAGFLNASRIKGSHAAIKTGMLAADAAFDAVQAG-RQADELNAYPDAFKQ 55
Cdd:COG0644   222 VLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGdFSAEALAEYERRLRE 277
 
Name Accession Description Interval E-value
FixC COG0644
Dehydrogenase (flavoprotein) [Energy production and conversion];
1-55 1.54e-11

Dehydrogenase (flavoprotein) [Energy production and conversion];


Pssm-ID: 440409 [Multi-domain]  Cd Length: 281  Bit Score: 58.83  E-value: 1.54e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1524922358   1 GALIGDDAGFLNASRIKGSHAAIKTGMLAADAAFDAVQAG-RQADELNAYPDAFKQ 55
Cdd:COG0644   222 VLLVGDAAGFVDPLTGEGIHLAMKSGRLAAEAIAEALEGGdFSAEALAEYERRLRE 277
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH