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Conserved domains on  [gi|1512063867|gb|RNJ64528|]
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hypothetical protein EDM03_08260 [Porphyrobacter sp. IPPAS B-1204]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6489 super family cl45473
Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. ...
 1-79 1.02e-09

Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


The actual alignment was detected with superfamily member pfam20099:

Pssm-ID: 437931  Cd Length: 80  Bit Score: 49.84  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1512063867  1 MKITIEVDCTPEEARSFMGLPDVSAANNVYVDNITKAMQ---GVSNPAQMAEYAQALAPMGQVG-LKLFQSfveGGMKAA 76
Cdd:pfam20099  1 MKFTVNVECSPEEARRFMGLPDVTPINEALVSEMGKRMEknlALMSPDTMVSSWMSVGTQAQDAfLKLMTS---GAAAAM 77


                 ...
gi 1512063867 77 SGA 79
Cdd:pfam20099 78 SGA 80
 
Name Accession Description Interval E-value
DUF6489 pfam20099
Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. ...
 1-79 1.02e-09

Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 437931  Cd Length: 80  Bit Score: 49.84  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1512063867  1 MKITIEVDCTPEEARSFMGLPDVSAANNVYVDNITKAMQ---GVSNPAQMAEYAQALAPMGQVG-LKLFQSfveGGMKAA 76
Cdd:pfam20099  1 MKFTVNVECSPEEARRFMGLPDVTPINEALVSEMGKRMEknlALMSPDTMVSSWMSVGTQAQDAfLKLMTS---GAAAAM 77


                 ...
gi 1512063867 77 SGA 79
Cdd:pfam20099 78 SGA 80
 
Name Accession Description Interval E-value
DUF6489 pfam20099
Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. ...
 1-79 1.02e-09

Family of unknown function (DUF6489); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.


Pssm-ID: 437931  Cd Length: 80  Bit Score: 49.84  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1512063867  1 MKITIEVDCTPEEARSFMGLPDVSAANNVYVDNITKAMQ---GVSNPAQMAEYAQALAPMGQVG-LKLFQSfveGGMKAA 76
Cdd:pfam20099  1 MKFTVNVECSPEEARRFMGLPDVTPINEALVSEMGKRMEknlALMSPDTMVSSWMSVGTQAQDAfLKLMTS---GAAAAM 77


                 ...
gi 1512063867 77 SGA 79
Cdd:pfam20099 78 SGA 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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