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Conserved domains on  [gi|1447223810|gb|REI58414|]
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lysine decarboxylase LdcC [Klebsiella variicola]

Protein Classification

lysine decarboxylase LdcC( domain architecture ID 11487770)

lysine decarboxylase LdcC catalyzes the conversion from L-lysine to cadaverine; constitutively but weakly expressed under various conditions

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK15399 PRK15399
lysine decarboxylase;
1-713 0e+00

lysine decarboxylase;


:

Pssm-ID: 185297 [Multi-domain]  Cd Length: 713  Bit Score: 1611.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810   1 MNIIAIMGPHGVYHKDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLY 80
Cdd:PRK15399    1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  81 AFINAHSTMDVSSQDLRMTLWFFEYALGLSEEIATRIGQYTREYLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQK 160
Cdd:PRK15399   81 AFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLI 240
Cdd:PRK15399  161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 241 DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRDTGGAQWPVHAVITNSTYDGLLYNTTWLKE 320
Cdd:PRK15399  241 DRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQ 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHKMLAALSQASLIHIKGNYDEETFNEAFMMHTSTS 400
Cdd:PRK15399  321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 401 PSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQRLREESDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDAD 480
Cdd:PRK15399  401 PSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDAD 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 481 ADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY 560
Cdd:PRK15399  481 ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAY 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENL 640
Cdd:PRK15399  561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDVLPEMIMTPHQAWQRQIKGEVETVALEQL 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447223810 641 VGRISANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDEDGVYRVRVLKNDE 713
Cdd:PRK15399  641 VGRVSANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGQHYPGFETDIHGAKRDEDGVYRVRVLKMAG 713
 
Name Accession Description Interval E-value
PRK15399 PRK15399
lysine decarboxylase;
1-713 0e+00

lysine decarboxylase;


Pssm-ID: 185297 [Multi-domain]  Cd Length: 713  Bit Score: 1611.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810   1 MNIIAIMGPHGVYHKDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLY 80
Cdd:PRK15399    1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  81 AFINAHSTMDVSSQDLRMTLWFFEYALGLSEEIATRIGQYTREYLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQK 160
Cdd:PRK15399   81 AFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLI 240
Cdd:PRK15399  161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 241 DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRDTGGAQWPVHAVITNSTYDGLLYNTTWLKE 320
Cdd:PRK15399  241 DRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQ 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHKMLAALSQASLIHIKGNYDEETFNEAFMMHTSTS 400
Cdd:PRK15399  321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 401 PSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQRLREESDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDAD 480
Cdd:PRK15399  401 PSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDAD 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 481 ADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY 560
Cdd:PRK15399  481 ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAY 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENL 640
Cdd:PRK15399  561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDVLPEMIMTPHQAWQRQIKGEVETVALEQL 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447223810 641 VGRISANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDEDGVYRVRVLKNDE 713
Cdd:PRK15399  641 VGRVSANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGQHYPGFETDIHGAKRDEDGVYRVRVLKMAG 713
OKR_DC_1 pfam01276
Orn/Lys/Arg decarboxylase, major domain;
130-545 0e+00

Orn/Lys/Arg decarboxylase, major domain;


Pssm-ID: 396025 [Multi-domain]  Cd Length: 417  Bit Score: 684.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 130 PPFTRALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFG 209
Cdd:pfam01276   1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 210 AEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKV 289
Cdd:pfam01276  81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHHALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEAI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 290 RDTGGAQWPVHAVITNSTYDGLLYNTTWLKETLDVPS--IHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHK 367
Cdd:pfam01276 161 AEVPDAKGPRLAVITNPTYDGVLYNAKEIVDTLHHLSdpILFDSAWVGYEQFIPIYADASPMGGENENGPGIFVTQSVHK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 368 MLAALSQASLIHIKGN--YDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQrlrEE 445
Cdd:pfam01276 241 LLAALSQASYIHKKEGhiVNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERAIEFRKAID---TL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 446 SDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDADADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVV 525
Cdd:pfam01276 318 NNCEFFRPWNPEIVDGKECWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMDEDGEYSEFGVPATIVAKWLRENGIVP 397
                         410       420
                  ....*....|....*....|
gi 1447223810 526 EKTGPYNLLFLFSIGIDKTR 545
Cdd:pfam01276 398 EKTDLNNILFLFTPGEDRTK 417
LdcC COG1982
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
124-711 0e+00

Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];


Pssm-ID: 441585 [Multi-domain]  Cd Length: 486  Bit Score: 560.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 124 YLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYqkspvGCLFYDFFGGNTLKADVSIsVTELGSLLDHTGPHLEAEEY 203
Cdd:COG1982     1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 204 IARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPT-RNALGILGGIPRREFTR 282
Cdd:COG1982    75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHGLILSGAIPVYLNPEiDNELGIIGGITPEAVEE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 283 DSIQQKvrdtggaqWPVHAVITNSTYDGLLYNTTWLKETLD--VPSIHFDSAWVPYTHFHPIYQgKSGMSgeripGKVIF 360
Cdd:COG1982   155 ALIEHP--------DAKAVLITNPTYYGVCYDLKAIAELAHehGIPVLVDEAHGAHFGFHPDLP-RSAME-----AGADL 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 361 ETQSTHKMLAALSQASLIHIKGNY-DEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNsGKRLIQRSIERALDFRKEV 439
Cdd:COG1982   221 VVQSTHKTLGALTQSSMLHVKGGRvDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELLDEALELAIEARKEI 299
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 440 QRLreesdgWFFDIWQPEAVDkaecwpvapgedwhgfkdaDADHMYLDPVKVTILTPGMdeqgnmaeeGIPAALVAKFLD 519
Cdd:COG1982   300 NKI------PGLYVFGPEDLG-------------------APGVYDLDPTKLTIDVPGL---------GISGYEVAEYLR 345
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 520 ER-GVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDlyaedpdfyrnmriqdlaqgihrlir 598
Cdd:COG1982   346 EEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLPL-------------------------- 399
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 599 qhqlpqlmlsAFDVLPEMKMTPHHAWQrqikGEVETIELENLVGRISANMILPYPPGVPLLMPGEMITEEsraVLDFLLM 678
Cdd:COG1982   400 ----------AFPPLPELVMSPREAFF----AETELVPLEEAVGRIAAEMVIPYPPGIPLLMPGERITEE---VIDYLRA 462
                         570       580       590
                  ....*....|....*....|....*....|...
gi 1447223810 679 LCSIGRHYPGFEtdihgakrdEDGVYRVRVLKN 711
Cdd:COG1982   463 LEEAGGRFPGFE---------DPELRTIRVVKE 486
Orn_deC_like cd00615
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
131-441 1.22e-132

Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.


Pssm-ID: 99739 [Multi-domain]  Cd Length: 294  Bit Score: 393.54  E-value: 1.22e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 131 PFTRALFNYVQEGKYTFCTPGHMGGSAYQKSpvgclFYDFFGGNTLKADVSIsVTELGSLLDHTGPHLEAEEYIARAFGA 210
Cdd:cd00615     1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 211 EQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNA-LGILGGIPRREFTRDSIQqkv 289
Cdd:cd00615    75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPyYGIAGGIPPETFKKALIE--- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 290 rdtggAQWPVHAVITNSTYDGLLYNTTWLKETLD--VPSIHFDSAWVPYTHFHPIYQGKSGMSGeripgkVIFETQSTHK 367
Cdd:cd00615   152 -----HPDAKAAVITNPTYYGICYNLRKIVEEAHhrGLPVLVDEAHGAHFRFHPILPSSAAMAG------ADIVVQSTHK 220
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447223810 368 MLAALSQASLIHIKGNY-DEETFNEAFMMHTSTSPSYPIVASIETAAAMLrGNSGKRLIQRSIERALDFRKEVQR 441
Cdd:cd00615   221 TLPALTQGSMIHVKGDLvNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELALYARQEINK 294
 
Name Accession Description Interval E-value
PRK15399 PRK15399
lysine decarboxylase;
1-713 0e+00

lysine decarboxylase;


Pssm-ID: 185297 [Multi-domain]  Cd Length: 713  Bit Score: 1611.72  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810   1 MNIIAIMGPHGVYHKDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLY 80
Cdd:PRK15399    1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  81 AFINAHSTMDVSSQDLRMTLWFFEYALGLSEEIATRIGQYTREYLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQK 160
Cdd:PRK15399   81 AFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEYLDNITPPFTKALFTYVKEGKYTFCTPGHMGGTAYQK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLI 240
Cdd:PRK15399  161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 241 DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRDTGGAQWPVHAVITNSTYDGLLYNTTWLKE 320
Cdd:PRK15399  241 DRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQ 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHKMLAALSQASLIHIKGNYDEETFNEAFMMHTSTS 400
Cdd:PRK15399  321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 401 PSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQRLREESDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDAD 480
Cdd:PRK15399  401 PSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDAD 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 481 ADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY 560
Cdd:PRK15399  481 ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAY 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENL 640
Cdd:PRK15399  561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDVLPEMIMTPHQAWQRQIKGEVETVALEQL 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447223810 641 VGRISANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDEDGVYRVRVLKNDE 713
Cdd:PRK15399  641 VGRVSANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGQHYPGFETDIHGAKRDEDGVYRVRVLKMAG 713
PRK15400 PRK15400
lysine decarboxylase;
1-714 0e+00

lysine decarboxylase;


Pssm-ID: 185298 [Multi-domain]  Cd Length: 714  Bit Score: 1294.04  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810   1 MNIIAIMGPHGVYHKDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLY 80
Cdd:PRK15400    1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMNENLPLY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  81 AFINAHSTMDVSSQDLRMTLWFFEYALGLSEEIATRIGQYTREYLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQK 160
Cdd:PRK15400   81 AFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEYIDTILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 161 SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLI 240
Cdd:PRK15400  161 SPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 241 DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRDTGGAQWPVHAVITNSTYDGLLYNTTWLKE 320
Cdd:PRK15400  241 DRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKK 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 321 TLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHKMLAALSQASLIHIKGNYDEETFNEAFMMHTSTS 400
Cdd:PRK15400  321 TLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTS 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 401 PSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQRLREESDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDAD 480
Cdd:PRK15400  401 PHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 481 ADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY 560
Cdd:PRK15400  481 NEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 561 DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENL 640
Cdd:PRK15400  561 DLNLRVKNMLPSLYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAFEVLPTMVMTPYAAFQKELHGMTEEVYLDEM 640
                         650       660       670       680       690       700       710
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447223810 641 VGRISANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDEDGVYRVRVLKNDER 714
Cdd:PRK15400  641 VGRVNANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGRYTVKVLKEESK 714
OKR_DC_1 pfam01276
Orn/Lys/Arg decarboxylase, major domain;
130-545 0e+00

Orn/Lys/Arg decarboxylase, major domain;


Pssm-ID: 396025 [Multi-domain]  Cd Length: 417  Bit Score: 684.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 130 PPFTRALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFG 209
Cdd:pfam01276   1 PPLYKALFKYVRRGNYTFHCPGHQGGAGFQKHPAGRFFYDFFGENLLRIDVCIEDVELGDLLDHEGAIKEAQKYAARVFG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 210 AEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKV 289
Cdd:pfam01276  81 ADKSYFVVNGTSGSNKTVGMAVCTPGDTILIDRNCHKSIHHALMLSGATPVYLEPSRNAYGIIGGIPLHEFQEETLKEAI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 290 RDTGGAQWPVHAVITNSTYDGLLYNTTWLKETLDVPS--IHFDSAWVPYTHFHPIYQGKSGMSGERIPGKVIFETQSTHK 367
Cdd:pfam01276 161 AEVPDAKGPRLAVITNPTYDGVLYNAKEIVDTLHHLSdpILFDSAWVGYEQFIPIYADASPMGGENENGPGIFVTQSVHK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 368 MLAALSQASLIHIKGN--YDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQrlrEE 445
Cdd:pfam01276 241 LLAALSQASYIHKKEGhiVNHDRFNEAFMMHATTSPSYPIFASLDVAAKMLEGNSGRRLWNECVERAIEFRKAID---TL 317
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 446 SDGWFFDIWQPEAVDKAECWPVAPGEDWHGFKDADADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVV 525
Cdd:pfam01276 318 NNCEFFRPWNPEIVDGKECWPFHPGETWHGFEGYADNQYFLDPCKLTILTPGMDEDGEYSEFGVPATIVAKWLRENGIVP 397
                         410       420
                  ....*....|....*....|
gi 1447223810 526 EKTGPYNLLFLFSIGIDKTR 545
Cdd:pfam01276 398 EKTDLNNILFLFTPGEDRTK 417
PRK15029 PRK15029
arginine decarboxylase; Provisional
19-710 0e+00

arginine decarboxylase; Provisional


Pssm-ID: 184989 [Multi-domain]  Cd Length: 755  Bit Score: 566.01  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  19 IKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQL-------NEYLPLyaFINAHSTMDV 91
Cdd:PRK15029   21 VERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLigklherQQNVPV--FLLGDREKAL 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  92 SSQDLRMTLWFFEYALGLSEE---IATRIGQYTREYLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFY 168
Cdd:PRK15029   99 AAMDRDLLELVDEFAWILEDTadfIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYH 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 169 DFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSL 248
Cdd:PRK15029  179 DYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSI 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 249 AHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIQQKVRD-----TGGAQWPVHAVITNSTYDGLLYNTTWLKETLD 323
Cdd:PRK15029  259 EQGLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISEspltkDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLE 338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 324 --VPSIHFDSAWVPYTHFHPIYQGKSGMSGERI--PGKVIFETQSTHKMLAALSQASLIHI---KGNYDEETFNEAFMMH 396
Cdd:PRK15029  339 ktSDRLHFDEAWYGYARFNPIYADHYAMRGEPGdhNGPTVFATHSTHKLLNALSQASYIHVregRGAINFSRFNQAYMMH 418
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 397 TSTSPSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEVQRLR---EESDGWFFDIWQPEAVDKAE---------- 463
Cdd:PRK15029  419 ATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYkefTADGSWFFKPWNKEVVTDPQtgktydfada 498
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 464 ----------CWPVAPGEDWHGFKDADADHMYLDPVKVTILTPGMDEQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNL 533
Cdd:PRK15029  499 ptkllttvqdCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQI 578
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 534 LFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVL 613
Cdd:PRK15029  579 MFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPDTYANMGIHDLGDTMFAWLKENNPGARLNEAYSGL 658
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 614 PEMKMTPHHAWQRQIKGEVETIELENLVGRISANMILPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDI 693
Cdd:PRK15029  659 PVAEITPREAYNAIVDNNVELVSIENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHET 738
                         730
                  ....*....|....*..
gi 1447223810 694 HGAKRdEDGVYRVRVLK 710
Cdd:PRK15029  739 EGTEI-IDGIYHVMCVK 754
LdcC COG1982
Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];
124-711 0e+00

Arginine/lysine/ornithine decarboxylase [Amino acid transport and metabolism];


Pssm-ID: 441585 [Multi-domain]  Cd Length: 486  Bit Score: 560.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 124 YLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYqkspvGCLFYDFFGGNTLKADVSIsVTELGSLLDHTGPHLEAEEY 203
Cdd:COG1982     1 YMDQLLTPLFDALKKYAERGPVSFHVPGHKGGRGF-----GREFYDFFGENVFRLDLTE-LPGLDDLHDPEGVIKEAQEL 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 204 IARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPT-RNALGILGGIPRREFTR 282
Cdd:COG1982    75 AAEAFGADRTFFLVNGTSSGNKAMILAVCGPGDKVLVPRNCHKSVIHGLILSGAIPVYLNPEiDNELGIIGGITPEAVEE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 283 DSIQQKvrdtggaqWPVHAVITNSTYDGLLYNTTWLKETLD--VPSIHFDSAWVPYTHFHPIYQgKSGMSgeripGKVIF 360
Cdd:COG1982   155 ALIEHP--------DAKAVLITNPTYYGVCYDLKAIAELAHehGIPVLVDEAHGAHFGFHPDLP-RSAME-----AGADL 220
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 361 ETQSTHKMLAALSQASLIHIKGNY-DEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNsGKRLIQRSIERALDFRKEV 439
Cdd:COG1982   221 VVQSTHKTLGALTQSSMLHVKGGRvDHERVNEALMLLQSTSPSYLLMASLDVARRQMAGE-GEELLDEALELAIEARKEI 299
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 440 QRLreesdgWFFDIWQPEAVDkaecwpvapgedwhgfkdaDADHMYLDPVKVTILTPGMdeqgnmaeeGIPAALVAKFLD 519
Cdd:COG1982   300 NKI------PGLYVFGPEDLG-------------------APGVYDLDPTKLTIDVPGL---------GISGYEVAEYLR 345
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 520 ER-GVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDlyaedpdfyrnmriqdlaqgihrlir 598
Cdd:COG1982   346 EEyGIQVELADLYNILFLLSLGDTKEDIERLVAALKELKRLYDKNAPLEEVLPL-------------------------- 399
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 599 qhqlpqlmlsAFDVLPEMKMTPHHAWQrqikGEVETIELENLVGRISANMILPYPPGVPLLMPGEMITEEsraVLDFLLM 678
Cdd:COG1982   400 ----------AFPPLPELVMSPREAFF----AETELVPLEEAVGRIAAEMVIPYPPGIPLLMPGERITEE---VIDYLRA 462
                         570       580       590
                  ....*....|....*....|....*....|...
gi 1447223810 679 LCSIGRHYPGFEtdihgakrdEDGVYRVRVLKN 711
Cdd:COG1982   463 LEEAGGRFPGFE---------DPELRTIRVVKE 486
Orn_deC_like cd00615
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
131-441 1.22e-132

Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.


Pssm-ID: 99739 [Multi-domain]  Cd Length: 294  Bit Score: 393.54  E-value: 1.22e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 131 PFTRALFNYVQEGKYTFCTPGHMGGSAYQKSpvgclFYDFFGGNTLKADVSIsVTELGSLLDHTGPHLEAEEYIARAFGA 210
Cdd:cd00615     1 PLFEALKEYAKRGIISFHVPGHKGGRGFRKS-----FYEFYGENLFKADVTE-LTGLDDLLDPTGPIKEAQELAARAFGA 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 211 EQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNA-LGILGGIPRREFTRDSIQqkv 289
Cdd:cd00615    75 KHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPyYGIAGGIPPETFKKALIE--- 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 290 rdtggAQWPVHAVITNSTYDGLLYNTTWLKETLD--VPSIHFDSAWVPYTHFHPIYQGKSGMSGeripgkVIFETQSTHK 367
Cdd:cd00615   152 -----HPDAKAAVITNPTYYGICYNLRKIVEEAHhrGLPVLVDEAHGAHFRFHPILPSSAAMAG------ADIVVQSTHK 220
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447223810 368 MLAALSQASLIHIKGNY-DEETFNEAFMMHTSTSPSYPIVASIETAAAMLrGNSGKRLIQRSIERALDFRKEVQR 441
Cdd:cd00615   221 TLPALTQGSMIHVKGDLvNPDRVNEALNLHQSTSPSYLILASLDVARAMM-ALEGKELVEELIELALYARQEINK 294
PRK13578 PRK13578
ornithine decarboxylase; Provisional
108-711 1.38e-120

ornithine decarboxylase; Provisional


Pssm-ID: 237434 [Multi-domain]  Cd Length: 720  Bit Score: 377.38  E-value: 1.38e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 108 GLSEEIATRIGQYTRE-------YLDNITPPFTRALFNYVQEGKYTFCTPGHMGGSAYQKSPVGCLFYDFFGGNTLKADV 180
Cdd:PRK13578   80 GVFELCESNNEFYGRQletaaskYEENLLPPFFDTLTDYVEMGNSTFDCPGHQGGQFFRKHPAGRQFYDFFGENLFRADM 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 181 SISVTELGSLLDHTGPHLEAEEYIARAFGAEQSYMVTNGTSTSNKIVGMYSAPAGSTLLIDRNCHKSLAH-LLMMSDVVP 259
Cdd:PRK13578  160 CNADVKLGDLLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHgALIQAGATP 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 260 LWLKPTRNALGILGGIPRREFTRDSIQQKVRDT--GGAQWPVH---AVITNSTYDGLLYNTTWLKETL----DVpsIHFD 330
Cdd:PRK13578  240 VYLETARNPFGFIGGIDAHCFDEEYLREQIREVapERADEARPfrlAVIQLGTYDGTIYNARQVVDKIghlcDY--ILFD 317
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 331 SAWVPYTHFHPIYQGKSGMS---GERIPGkvIFETQSTHKMLAALSQASLIHIKGNY--------DEETFNEAFMMHTST 399
Cdd:PRK13578  318 SAWVGYEQFIPMMADCSPLLlelNENDPG--IFVTQSVHKQQAGFSQTSQIHKKDNHikgqarycPHKRLNNAFMLHAST 395
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 400 SPSYPIVASIETAAAMLRGNSGKRLIQRSIERALDFRKEV----QRLR----EESDGwffDIWQ----PEAVDKAECWPV 467
Cdd:PRK13578  396 SPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLIlarcKLIRpfipPVVDG---KPWQdyptEQIASDLRFFSF 472
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 468 APGEDWHGFKDADADHMYLDPVKVTILTPGMD-EQGNMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRA 546
Cdd:PRK13578  473 EPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDaETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKL 552
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 547 MGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAF--DVLPEMKMTPHHAW 624
Cdd:PRK13578  553 QQLVAMLARFEKHIEDDAPLAEVLPSVYKKNPERYRGYTLRQLCQEMHDLYVSHDVKQLQKEMFrkASFPRVVMNPQDAN 632
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 625 QRQIKGEVETIELENLVGRISANMILPYPPGVPLLMPGEMITEesrAVLDFLLMLCSIGRHYPGFETDIHG--AKRDEDG 702
Cdd:PRK13578  633 IAYIRGEVELVRLSEAEGRIAAEGALPYPPGVLCVVPGEIWGG---AVQRYFLALEEGINLLPGFAPELQGvyLETDADG 709
                         650
                  ....*....|.
gi 1447223810 703 VYRVR--VLKN 711
Cdd:PRK13578  710 RKRAYgyVLKP 720
OKR_DC_1_C pfam03711
Orn/Lys/Arg decarboxylase, C-terminal domain;
570-701 3.55e-67

Orn/Lys/Arg decarboxylase, C-terminal domain;


Pssm-ID: 461020 [Multi-domain]  Cd Length: 132  Bit Score: 217.01  E-value: 3.55e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810 570 LPDLYAEDPDFYRNMRIQDLAQGIHRLIRQHQLPQLMLSAFDVLPEMKMTPHHAWQRQIKGEVETIELENLVGRISANMI 649
Cdd:pfam03711   1 LPELVAAYPERYEGMGLRDLCQEMHDFYRENNVARLQKEAFRSLPEPAMTPAEAYQELVRGEVELVPLDELEGRIAAVGV 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1447223810 650 LPYPPGVPLLMPGEMITEESRAVLDFLLMLCSIGRHYPGFETDIHGAKRDED 701
Cdd:pfam03711  81 LPYPPGIPLLMPGERFGEENRPILDYLLALEEFDNRFPGFETEIHGVYREED 132
OKR_DC_1_N pfam03709
Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is ...
15-124 3.62e-34

Orn/Lys/Arg decarboxylase, N-terminal domain; This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.


Pssm-ID: 427454 [Multi-domain]  Cd Length: 111  Bit Score: 126.20  E-value: 3.62e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223810  15 KDEPIKELEAALQRQGFQTIWPQNSADLLQFIEHNPRICGVIFDWDEYSVDLCSDINQLNEYLPLYAFINAHSTMDVSSQ 94
Cdd:pfam03709   2 KIAASRELAEALERTGREVVDATSTDDLLAAIETFTDIAAVVLSWDDYAAGLLDEIRRRNFDLPVFLLGETHTSEDVPAD 81
                          90       100       110
                  ....*....|....*....|....*....|
gi 1447223810  95 DLRMTLWFFEYALGLSEEIATRIGQYTREY 124
Cdd:pfam03709  82 VLRLIDGFIELAEDTPEFIARQIEAAAKKY 111
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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