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Conserved domains on  [gi|1447223792|gb|REI58396|]
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D-methionine ABC transporter permease MetI [Klebsiella variicola]

Protein Classification

methionine ABC transporter permease MetI( domain architecture ID 10793476)

methionine ABC transporter permease MetI is part of the binding-protein-dependent transport system for D-methionine and the toxic methionine analog alpha-methyl-methionine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.05e-137

D-methionine ABC transporter permease MetI;


:

Pssm-ID: 182726  Cd Length: 217  Bit Score: 382.93  E-value: 4.05e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   1 MSEAMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGQIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFSGDRIVRAVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.05e-137

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 382.93  E-value: 4.05e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   1 MSEAMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGQIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFSGDRIVRAVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 1.59e-91

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 267.31  E-value: 1.59e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   1 MSEAMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGQIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011     4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011    84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFSGDRIVRAVTHK 217
Cdd:COG2011   164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-177 6.18e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.30  E-value: 6.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  14 WETLAMTFVSGFFGFVLGLPVGVLLYVTRPgqivanaKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261    75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154


                  ....*..
gi 1447223792 171 GLGQIGY 177
Cdd:cd06261   155 EAPGPGT 161
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 2.84e-11

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 61.02  E-value: 2.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLlyvtRPGQIVANAKLYRTLSALVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-159 2.93e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 2.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  49 NAKLYRTLSALVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1447223792 128 ATPLQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALG 122
 
Name Accession Description Interval E-value
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-217 4.05e-137

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 382.93  E-value: 4.05e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   1 MSEAMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGQIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:PRK10782    1 MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:PRK10782   81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFSGDRIVRAVTHK 217
Cdd:PRK10782  161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTHK 217
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-217 1.59e-91

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 267.31  E-value: 1.59e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   1 MSEAMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGQIVANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80
Cdd:COG2011     4 MWSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGY 160
Cdd:COG2011    84 LIVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGY 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFSGDRIVRAVTHK 217
Cdd:COG2011   164 SAMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 9-144 9.25e-16

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 72.78  E-value: 9.25e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRpgqivanaKLYRTLSALVNIFRSIPFIILLVWMIPFTrvivgtSIG 88
Cdd:COG1174    16 ILALLLEHLLLVLLALLIALLIAVPLGILITRRR--------RLAGLVLGVANILQTIPSLALLALLIPLL------GIG 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALP 144
Cdd:COG1174    82 PAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALP 137
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 8-148 1.03e-15

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 72.80  E-value: 1.03e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   8 LLLRGVWETLAMTFVSGFFGFVLGLPVGVllyvtrpGQIVANAKLYRTLSALVNIFRSIPFIILLVW---MIPFtrviVG 84
Cdd:COG0765    14 LLLEGLLVTLLLTVLAIVLGLVLGLLLAL-------ARLSPNPVLRWLATAYVEFFRGTPLLVQLFFiyfGLPL----LG 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447223792  85 TSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEA----LPGLVN 148
Cdd:COG0765    83 IDLSpFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQAlriiLPPLGN 151
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 14-177 6.18e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.30  E-value: 6.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  14 WETLAMTFVSGFFGFVLGLPVGVLLYVTRPgqivanaKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQ--- 90
Cdd:cd06261     2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGlgl 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG 170
Cdd:cd06261    75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154


                  ....*..
gi 1447223792 171 GLGQIGY 177
Cdd:cd06261   155 EAPGPGT 161
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 4-148 1.24e-13

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 67.41  E-value: 1.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   4 AMMWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLlyVTRPgqIVANAKLYRTLSALVNIFRSIPfiiLLVWMIPFTRvIV 83
Cdd:COG3639    44 SYLPDLLSALLETLAIALLGTLLGAVLALPLAFL--AARN--LAPNPWVRLLARRLLNVLRAIP---ELVWALIFVA-AV 115

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447223792  84 GtsIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVN 148
Cdd:COG3639   116 G--LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 9-158 1.95e-13

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 67.10  E-value: 1.95e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPgqivanakLYRTLSALVNIFRSIPFIILlvwmIPFTRVIVGtsIG 88
Cdd:COG0600    59 LWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL--------LRRLLDPLLVFLRPIPPLAL----APLLILWFG--IG 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALP----GLVNAATITLITLV 158
Cdd:COG0600   125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPyiftGLRIALGLAWIGLV 198
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 12-150 2.15e-13

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 67.42  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  12 GVWETLAMTFVSGFFGFVLGLPVGVL--LYVTRpgqiVANAKLYRTLSALVNIFRSIPFIIL----LVWMIPFTRVIV-- 83
Cdd:COG0573    74 GILPLIVGTLLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDLFpw 149

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447223792  84 -GTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAA 150
Cdd:COG0573   150 pPSGFSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 9-147 2.84e-11

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 61.02  E-value: 2.84e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLlyvtRPGQIVANAKLYRTLSALVNIFRSIPfiiLLVWMIPFTrVIVGtsIG 88
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALL----AARNITPSPWLYGLARLLLNFLRAIP---ELVWALIFV-AAVG--LG 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLV 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFL 184
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 16-154 2.70e-10

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 58.12  E-value: 2.70e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  16 TLAMTFVSGFFGFVLGLPVGVLLYVTRPGqivanAKLYRTLSALVNIFRSIPFII-----LLVWMIPFtrvivGTSIGLQ 90
Cdd:COG0581    46 TLLLVLLATLIAVPLGVLAAIYLAEYARG-----GRLARLIRFAIDVLAGVPSIVyglfgYALFVLTL-----GLGFSLL 115

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1447223792  91 AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG0581   116 AGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAI 179
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 49-159 2.93e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 54.23  E-value: 2.93e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  49 NAKLYRTLSALVNIFRSIP-FIILLVWMIPFTRVIVGTSIglQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMG 127
Cdd:pfam00528  13 GRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGI--LPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1447223792 128 ATPLQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALG 122
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 9-156 3.46e-09

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 3.46e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLL-YVTRpgqivanaKLYRTLSALVNIFRSIPFIILLVWMIpftrVIVGTSI 87
Cdd:COG1173    74 LLYGARISLLVGLLAVLIALVIGVLLGLLAgYFGG--------WVDAVLMRLVDVLLAFPSLLLAIALV----AVLGPGL 141

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  88 GLqaAIVPLTVGAAPFIARMVENALLEIPT-GLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1173   142 LN--VILALGLTGWPGYARLVRAQVLSLRErEYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 20-154 1.02e-08

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 54.20  E-value: 1.02e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  20 TFVSGFFGFVLGLPVGVL--LYVTrpgqIVANAKLYRTLSALVNIFRSIPFIILLVW----MIPFTRVIVGTSIGLQAAI 93
Cdd:TIGR02138  68 TLITSLIALLIAVPVGIGiaIFLS----EIAPKRVRSVLKPVVELLAGIPSVVYGFWglfvLVPFLKPHFQPFLGSNLGL 143

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447223792  94 VPLTVGAA------------PFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITL 154
Cdd:TIGR02138 144 IPLFGGPIltagivlaimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGL 216
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-155 1.85e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 53.63  E-value: 1.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTR-PGQivanaKLYRTLSALVniFRSIPFIILLVWMI---------PF 78
Cdd:COG1178    52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDfPGR-----RLLRWLLLLP--LALPPYVVALAWIAlfgpngllnTL 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  79 TRVIVGTSI----GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITL 154
Cdd:COG1178   125 LRALFGLEPpdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVF 204


                  .
gi 1447223792 155 I 155
Cdd:COG1178   205 L 205
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 9-156 7.70e-08

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 51.27  E-value: 7.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPgqivanaKLYRTLSALVNIFRSIPFIILLVWMIPFTrVIVGTSIG 88
Cdd:COG1177    59 LLDALLNSLLIALLSTLLATVLGTPAALALARYRF-------RGRRLLLALLLLPLVVPGIVLGVALLLLF-SALGLSGG 130

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLIT 156
Cdd:COG1177   131 LWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTL 198
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-159 2.44e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.54  E-value: 2.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRpgqivanAKLYRTLSALVNIFRSIPFIIL-LVWMIPFTRVIVGTSI 87
Cdd:COG1178   336 LLRALLNSLLLALLAALLAVLLALLLAYLVRRRR-------GRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLY 408

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1447223792  88 GLQAAIV-PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1178   409 GTLAILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMK 481
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-155 8.63e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 48.46  E-value: 8.63e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1447223792 101 APFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK15050  173 TPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLL 227
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 68-160 9.13e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 48.17  E-value: 9.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  68 FIILLVWMIPFTRVIVGT-----SIGL----QAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVL 138
Cdd:COG0395   114 LLILATLMIPGQVLLIPLyllfrQLGLlntyWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIV 193

                          90       100
                  ....*....|....*....|..
gi 1447223792 139 LPEALPGLvnaATITLITLVGY 160
Cdd:COG0395   194 LPLSKPAL---ATVAIFTFIGA 212
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 102-159 9.56e-07

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 48.22  E-value: 9.56e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1447223792 102 PFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLITLVG 159
Cdd:COG1176   167 PFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALG 224
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 8-143 1.37e-06

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 47.36  E-value: 1.37e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   8 LLLRGVWETLAMTFvsgfFGFVLGLPVGVLLYVTRP--GQIVANAKLyrtlsALVNIFRSIPfIILLVWMIPFTRVIVGT 85
Cdd:PRK09494   14 LLLEGAKMTLWISV----LGLAGGLVIGLLAGFARAygGWIANHIAL-----VFIELIRGTP-IVVQVMFIYFALPMAFN 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447223792  86 SI---GLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEAL 143
Cdd:PRK09494   84 DLridPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLAL 144
PRK15100 PRK15100
cystine ABC transporter permease;
8-158 5.46e-06

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 45.51  E-value: 5.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   8 LLLRGVWETLAMTFVSGFFGFVLGLPVGvLLYVTRPGQIVANAKLYrtlsalVNIFRSIPFIILLvWMIPFTRVIVGTSI 87
Cdd:PRK15100   14 FLLKGAGYTLQLSIGGMFFGLLLGFILA-LMRLSPIWPVRWLARFY------VSIFRGTPLIAQL-FMIYYGLPQFGIEL 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1447223792  88 G-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPE----ALPGLVNaatiTLITLV 158
Cdd:PRK15100   86 DpIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQaartALPPLSN----SFISLV 157
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
9-147 3.11e-05

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 43.28  E-value: 3.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   9 LLRGVWETLAMTFVSGFFGFVLGLPVGVLlYVTRPGQIVANAKLYrtlsalVNIFRSIPFIILLVW---MIP-FTRVIVG 84
Cdd:PRK15107   16 LLDGLVITLKITVTAVVIGILWGTILAVM-RLSSFKPVAWFAKAY------VNVFRSIPLVMVLLWfylIVPgFLQNVLG 88

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1447223792  85 ----TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLV 147
Cdd:PRK15107   89 lspkTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMV 155
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
16-155 3.96e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 43.54  E-value: 3.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  16 TLAMTFVSGFFGFVLGLPVGV-LLYVTRPGQIVanaklyrtlSALVNIFRSIPFIILLVwmipftRVIVGTSIGLQAAIV 94
Cdd:PRK10952  149 TLALVLTALLFCIVIGLPLGIwLARSPRAAKII---------RPLLDAMQTTPAFVYLV------PIVMLFGIGNVPGVV 213

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1447223792  95 PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATITLI 155
Cdd:PRK10952  214 VTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLM 274
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 8-159 6.37e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 42.75  E-value: 6.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   8 LLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRpgqivaNAKLYRTLSALVNIFRSIP---FIILLVW---------- 74
Cdd:COG0601    90 LIAERLPVTLELALLALLLALLIGIPLGILAALRR------GSWLDRLITVLALLGISIPsfwLGLLLILlfavklgwlp 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  75 ---MIPFTRVIVGtsiGLQAAIVP---LTVGAAPFIARMVENALLEIptgL----IEASRAMGATPLQIVRKVLLPEALP 144
Cdd:COG0601   164 vsgRVSPWEDFLD---ALRHLILPaltLALGSLAGIARLTRSSMLEV---LgqdyVRTARAKGLSERRVLLRHALRNALI 237

                         170
                  ....*....|....*
gi 1447223792 145 GLVNAATITLITLVG 159
Cdd:COG0601   238 PVVTVLGLQLGGLLG 252
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
74-159 3.33e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 40.51  E-value: 3.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  74 WMIPFTRVIVGTSIGLQAAivpLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATIT 153
Cdd:PRK10971  128 WLAKFDIKVTYTWLGIAVA---MAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204


                  ....*.
gi 1447223792 154 LITLVG 159
Cdd:PRK10971  205 FTRSLG 210
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 6-74 7.07e-04

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 37.51  E-value: 7.07e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1447223792   6 MWLLLRGVWETLAMTFVSGFFGFVLGLPVGVLlyvtrpgQIVANAKLYRTLSALVNIFRSIPFIILLVW 74
Cdd:TIGR01726   2 LPFLLKGLLLTLLLSVLSILLGLVLGLLLALL-------RLSGNRPLRWIATVYVELFRGTPLLVQLFF 63
cysT CHL00187
sulfate transport protein; Provisional
 85-153 2.06e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 38.07  E-value: 2.06e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1447223792  85 TSIGLQAAIVPLTVGAA------PFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLVNAATIT 153
Cdd:CHL00187  127 SHLGIQIVFTKLGVLLAmifvsfPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
13-147 7.24e-03

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 36.45  E-value: 7.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  13 VWETLAMTFVSGFFGF----VLGLPVGVLLYVTRPGQivanaklyRTLSALVNIFRSIPFIILlvwmIPFtrVIVGTSIG 88
Cdd:PRK11365   58 LWQHLAISSWRALIGFsiggSLGLILGLISGLSRWGE--------RLLDTSIQMLRNVPHLAL----IPL--VILWFGID 123

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1447223792  89 LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRKVLLPEALPGLV 147
Cdd:PRK11365  124 ESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIM 182
artM PRK11122
arginine ABC transporter permease ArtM;
7-161 8.25e-03

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 36.09  E-value: 8.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792   7 WLLLRGVWETLAMTFVSGFFGFVLGLPVGVLLYVTRPGqIVANAKLYRTL----SALVNIF------------RSIPFII 70
Cdd:PRK11122    6 PELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPV-LVWLVRGYITLftgtPLLVQIFliyygpgqfpwlQEYPWLW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1447223792  71 LLV---WMipftrvivgtsiglqAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPLQIVRkVLLP----EAL 143
Cdd:PRK11122   85 HLLsqpWL---------------CAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPyafkRAL 148

                         170       180
                  ....*....|....*....|....*....
gi 1447223792 144 PGLVN-----------AATITLITLVGYS 161
Cdd:PRK11122  149 SSYSNevvlvfkstslAYTITLMDVMGYS 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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