NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1425564977|gb|RBT83098|]
View 

flagellin [Escherichia coli]

Protein Classification

lateral flagellin LafA( domain architecture ID 14341555)

lateral flagellin LafA in a rare type of flagellin, which is the subunit protein that polymerizes to form the flagella

Gene Ontology:  GO:0009288

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 23-326 3.91e-137

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


:

Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 391.20  E-value: 3.91e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 102
Cdd:NF033376    1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 103 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 182
Cdd:NF033376   81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 262
Cdd:NF033376  161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 263 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:NF033376  241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
 
Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 23-326 3.91e-137

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 391.20  E-value: 3.91e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 102
Cdd:NF033376    1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 103 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 182
Cdd:NF033376   81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 262
Cdd:NF033376  161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 263 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:NF033376  241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
24-326 1.51e-67

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 213.16  E-value: 1.51e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:NF038071    3 LSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntGTDGLFQSAVTFQVGA 183
Cdd:NF038071   83 DEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLL--------KDGGKFEAAVTFQIGG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINR 263
Cdd:NF038071  155 SSAEKLDVDASANVQKVNAEVVGTEKDVTAGIGTQAKA--------------ASAAITKLDTLLGDIGAVRSQFGANINR 220

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 264 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:NF038071  221 LEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
23-326 1.13e-48

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 167.03  E-value: 1.13e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 102
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 103 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFqSAVTFQVG 182
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLL----------NGSF-GTKSFQIG 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNISS------------------------------QLNTLVTDLSAISNSFSA----------------DQA 216
Cdd:PRK08869  150 ANSGEAVSLDLKSmrsdakimggvsydaeggadkdwtvgagntDLNVSFDDKGGETQAITInakagddieelatyinGQT 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 217 DTTGTA--------------GVSGGTELTAS-----------------------GSANQMITSISTAMDDVSQIQSKLGA 259
Cdd:PRK08869  230 DGVGASvsedgklqlfaagqKVSGGVSFSGGlaaelglgnatavtvddldistvGGAQQAVAVIDAALKYVDSHRADLGA 309

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425564977 260 SINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK08869  310 FQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
24-313 1.32e-45

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 155.02  E-value: 1.32e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqsavTFQVGA 183
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTP----------PFQVDY 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSdtmtvnissqlntlvtdlsaisnsfsadqadttgtagvsggteltaSGSANQMITSISTAMDDVSQIQSKLGASINR 263
Cdd:COG1344   151 QGD----------------------------------------------AGQRTAALGALDAALDNVSSARAELGARQNR 184

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1425564977 264 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:COG1344   185 LESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQ 234
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 26-164 5.34e-25

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 97.80  E-value: 5.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGT 164
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 26-305 2.41e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 92.03  E-value: 2.41e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTSNT---------------GTD 170
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIF--SGTKTDtppfsedeggevtynGDG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 171 GLFQSAVTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvSGGTELTASgsaNQMITSISTAMDDV 250
Cdd:TIGR02550 160 GQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDAL---SSGDAKAAL---SASLNDLDKALDNV 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1425564977 251 SQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 305
Cdd:TIGR02550 234 LSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQ 288
 
Name Accession Description Interval E-value
lat_flg_LafA_1 NF033376
lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some ...
 23-326 3.91e-137

lateral flagellin LafA; This HMM describes rare second type of flagellin from E. coli and some closely related species, called LafA, where the familiar and common flagellin, FliC, is nearly universal and carries the H-antigen used for serotyping strains. In contrast to FliC, whose center region is highly variable, LafA shows little variability in sequence. In many E. coli strains, the Flag-2 locus either is absent or is cryptic, appearing degraded and non-functional.


Pssm-ID: 380229 [Multi-domain]  Cd Length: 304  Bit Score: 391.20  E-value: 3.91e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 102
Cdd:NF033376    1 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGDRINSSADDAAGKQIANRLTAQSSGMDVALSNINDATAMLQTADSM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 103 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 182
Cdd:NF033376   81 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASIN 262
Cdd:NF033376  161 AESSDTMTVNISSQLNQLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMINSISTAMDDVSQIQSKLGASIN 240

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 263 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:NF033376  241 RLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 304
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
24-326 1.51e-67

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 213.16  E-value: 1.51e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:NF038071    3 LSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEGAM 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntGTDGLFQSAVTFQVGA 183
Cdd:NF038071   83 DEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLL--------KDGGKFEAAVTFQIGG 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINR 263
Cdd:NF038071  155 SSAEKLDVDASANVQKVNAEVVGTEKDVTAGIGTQAKA--------------ASAAITKLDTLLGDIGAVRSQFGANINR 220

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 264 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:NF038071  221 LEHTVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLLR 283
PRK08869 PRK08869
polar flagellin E;
23-326 1.13e-48

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 167.03  E-value: 1.13e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSM 102
Cdd:PRK08869    1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 103 FDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFqSAVTFQVG 182
Cdd:PRK08869   81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLL----------NGSF-GTKSFQIG 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNISS------------------------------QLNTLVTDLSAISNSFSA----------------DQA 216
Cdd:PRK08869  150 ANSGEAVSLDLKSmrsdakimggvsydaeggadkdwtvgagntDLNVSFDDKGGETQAITInakagddieelatyinGQT 229

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 217 DTTGTA--------------GVSGGTELTAS-----------------------GSANQMITSISTAMDDVSQIQSKLGA 259
Cdd:PRK08869  230 DGVGASvsedgklqlfaagqKVSGGVSFSGGlaaelglgnatavtvddldistvGGAQQAVAVIDAALKYVDSHRADLGA 309

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425564977 260 SINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK08869  310 FQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
24-313 1.32e-45

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 155.02  E-value: 1.32e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:COG1344     1 MRISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqsavTFQVGA 183
Cdd:COG1344    81 GEITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTATDTP----------PFQVDY 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSdtmtvnissqlntlvtdlsaisnsfsadqadttgtagvsggteltaSGSANQMITSISTAMDDVSQIQSKLGASINR 263
Cdd:COG1344   151 QGD----------------------------------------------AGQRTAALGALDAALDNVSSARAELGARQNR 184

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1425564977 264 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:COG1344   185 LESAINNLSDLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQ 234
PRK12802 PRK12802
flagellin; Provisional
 22-326 4.41e-40

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 141.94  E-value: 4.41e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  22 IMLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADS 101
Cdd:PRK12802    1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 102 MFDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGtsntgtdglfqSAVTFQV 181
Cdd:PRK12802   81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSA-----------GTMTFQV 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 182 GAESSDTMTVNISsqlntlvtdlsaISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASI 261
Cdd:PRK12802  150 GANTGQSNQITFG------------LSASFDATGLGVGSGTLITGADSAAAETNAQAAITAIDAALQTINTTRADLGAAQ 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1425564977 262 NRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK12802  218 NRLQSTISNLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12807 PRK12807
flagellin; Provisional
 24-326 1.06e-38

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 138.42  E-value: 1.06e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:PRK12807    1 MRINTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAM 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTGTDGLFQSAVTFQVGA 183
Cdd:PRK12807   81 NSVSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLLAGTGAVTIGSTSISGAEISIETLD 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSDTMTVNIssQLNTLvtdlsaisnsfsadQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINR 263
Cdd:PRK12807  161 SSATNQQITI--KLANT--------------TAEKLGIDATTSNISISGAASALAAISALNTALNTVAGNRATLGATLNR 224

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 264 LNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK12807  225 LDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLLQ 287
PRK12804 PRK12804
flagellin; Provisional
 24-326 4.99e-36

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 131.66  E-value: 4.99e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:PRK12804    1 MRINHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAAN-GTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLfgVSGTSNTGTDGLFQSAVTFQVG 182
Cdd:PRK12804   81 TETHSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKL--LDGTFKPAAPAAGTKSLTFQIG 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 183 AESSDTMTVNI----SSQLNTLVTDLSAISNSFSADqADTTGTAGVSGgtelTASGSANQMITSISTAMDDVSQIQSKLG 258
Cdd:PRK12804  159 ANAAQQLSVNIeamsADALGVKDTDGTLVTGKSVSD-IDVTKFANAAA----AADGGFDDQLKIVDGAIKQVSDQRSKLG 233

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1425564977 259 ASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK12804  234 AVQNRLEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 301
PRK06819 PRK06819
FliC/FljB family flagellin;
26-313 3.68e-31

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 120.27  E-value: 3.68e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK06819    5 INTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEGALNE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDE----YDEL-----------------------------GQQMSDMLQ--N 150
Cdd:PRK06819   85 INNNLQRVRELTVQAQNGSNSSSDLDSIQDEisqrLAEIdrvsdqtqfngvkvlaedttmsiqvgandGETIDINLQkiD 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 151 TTYGGTNLFGVSGTSNTGTDGLF--QSAVTFQVGAESSDTMTVNISSQ--LNTLVTDLSAIS------------------ 208
Cdd:PRK06819  165 SKSLGLGSFSVSGVSGALTSLTFtdTALDTSVTGVTTTTALDFSDISTfaKGATVHGIGDVGtdgayadgyvirttdgkq 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 209 NSFSADQADTTGTAG---------VSGGTELTASGSANQMIT-----SISTAMDDVSQIQSKLGASINRLNDTANNLTSM 274
Cdd:PRK06819  245 YKGEVDATNGKVTFAddangdpitDATKLEAAAQFSPAGKATaspleTLDDALKQVDGLRSSLGAVQNRFESTVTNLNNT 324

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 1425564977 275 QDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:PRK06819  325 VTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQ 363
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 26-164 5.34e-25

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 97.80  E-value: 5.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGT 164
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGINT 139
PRK12805 PRK12805
FliC/FljB family flagellin;
24-325 4.83e-24

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 99.56  E-value: 4.83e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMF 103
Cdd:PRK12805    1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 104 DEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNTgtdglfqSAVTFQVGA 183
Cdd:PRK12805   81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAA-------TQVSIQASD 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 184 ESSDTMTVNISSqlntlvtdlsaiSNSFSADQADTTGTAGVSGGTELTA--SGSANQMITSISTAMDDVSQIQSKLGASI 261
Cdd:PRK12805  154 KANDLINIDLFN------------AKGLSAGTITLGSGSTVAGYSALSVadADSSQEATEAIDELINNISNGRALLGAGM 221

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 262 NRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLL 325
Cdd:PRK12805  222 SRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 26-305 2.41e-21

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 92.03  E-value: 2.41e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:TIGR02550   2 VSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALSS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTSNT---------------GTD 170
Cdd:TIGR02550  82 VGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIF--SGTKTDtppfsedeggevtynGDG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 171 GLFQSAVTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTagvSGGTELTASgsaNQMITSISTAMDDV 250
Cdd:TIGR02550 160 GQRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDAL---SSGDAKAAL---SASLNDLDKALDNV 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1425564977 251 SQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 305
Cdd:TIGR02550 234 LSARAEVGARLNRLENLNSRLSEQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQ 288
PRK12808 PRK12808
flagellin; Provisional
 26-158 3.83e-21

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 93.48  E-value: 3.83e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK12808    3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNL 158
Cdd:PRK12808   83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNL 135
PRK12806 PRK12806
flagellin; Provisional
 26-237 7.21e-20

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 89.75  E-value: 7.21e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK12806    5 INTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEGAMQE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFQSAVtFQVGAES 185
Cdd:PRK12806   85 TTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRIL----------DGSFSGAS-FQVGANS 153

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1425564977 186 SDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSAN 237
Cdd:PRK12806  154 NQTINFSIGSIKASSIGGIATATGTEVAGAAATDITIAIGGGAATSINSSAN 205
PRK12803 PRK12803
flagellin; Provisional
 26-326 7.24e-20

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 88.71  E-value: 7.24e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK12803    3 INHNTSAINASRNNSINAANLSKTQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNLNE 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFG-------VSGTSNTGTDGLFQSAVT 178
Cdd:PRK12803   83 VEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLSnksaaqnVRTAEELGMQPAKINTPA 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 179 FQVGAESSDTMTVNI-SSQLNTLVTDLSA--ISNSFSADQADTTGTA----------------------GVSGGTELTAS 233
Cdd:PRK12803  163 SLSGSQASWTLRVHVgANQDEAIAVNIYAanVANLFSGEGAQQAAPVqegaqqegaqaapapaaapaqgGVNSPVNVTTT 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 234 GSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:PRK12803  243 VDANMSLAKIENAIRMISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQ 322

                         330
                  ....*....|...
gi 1425564977 314 SNSMSSMVSSLLQ 326
Cdd:PRK12803  323 ANQVPQYVLSLLR 335
PRK08026 PRK08026
FliC/FljB family flagellin;
26-292 8.51e-19

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 86.72  E-value: 8.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK08026    5 INTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTsntgtdglfqsaVTFQVGAES 185
Cdd:PRK08026   85 INNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGS------------MKIQVGAND 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 186 SDTMTVN---ISSQ---LNTL-------VTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANqmitsISTAMDDVSQ 252
Cdd:PRK08026  153 GETITIDlkkIDSDtlgLDGFnvngkgtVANTAATVSDLTAAGATLDTTGLYDVKTKNAALTTAD-----ALAKLGDGDK 227

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1425564977 253 IQSKLGASINRLNDTANN--LTSMQDNTEVAIGNIMDTDYAT 292
Cdd:PRK08026  228 VTATATGGDYTYNAKSGKyqAADLAATLTPDVGGTAGASYTI 269
PRK12584 PRK12584
flagellin A; Reviewed
 26-195 6.46e-18

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 84.19  E-value: 6.46e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK12584    5 VNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAES 185
Cdd:PRK12584   85 QLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNK-----------EFQVGAYS 153

                         170
                  ....*....|
gi 1425564977 186 SDTMTVNISS 195
Cdd:PRK12584  154 NQSIKASIGS 163
PRK08411 PRK08411
flagellin; Reviewed
 26-193 2.97e-17

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 82.34  E-value: 2.97e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK08411    5 INTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAES 185
Cdd:PRK08411   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQ-----------EFQIGASS 153


                  ....*...
gi 1425564977 186 SDTMTVNI 193
Cdd:PRK08411  154 NQTVKATI 161
PRK13588 PRK13588
flagellin B; Provisional
 26-231 1.58e-16

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 79.91  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK13588    5 INTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvsgtsntgtDGLFqSAVTFQVGAES 185
Cdd:PRK13588   85 QIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQML----------SGSF-SNKEFQIGAYS 153

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1425564977 186 SDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELT 231
Cdd:PRK13588  154 NTTVKASIGATSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLN 199
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 50-301 6.07e-16

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 76.96  E-value: 6.07e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  50 MERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDD 129
Cdd:PRK07701   27 QEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQATDILQRARELAVQAANGTNTQTD 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 130 LQAMQDEYDELGQQMSDmLQNTTYGGTNLFG--------VSGTSNTGTDGLFQSAVTFQVGAesSDTMTVNI-------- 193
Cdd:PRK07701  107 RQAIAQEIEQLKEQLIQ-IANTQYNGRYIFNgtktdtppVTDDGDNIENSTDSGDIEFEIAK--GNTINVNVpgdkafgg 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 194 -SSQLNTLVTDLSAISNSFsaDQADTTGtagvsggteltasgsANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLT 272
Cdd:PRK07701  184 qSGGGSNLFEMLDNLENAL--DSGDTQG---------------VSNLLSDIDQHIDNVLAVRAELGARSNRLELIENRLS 246

                         250       260
                  ....*....|....*....|....*....
gi 1425564977 273 SMQDNTEVAIGNIMDTDYATEASNMTKQQ 301
Cdd:PRK07701  247 DQEVNATKLLSDNEDVDLAEVITDLKTQE 275
PRK13589 PRK13589
flagellin A;
26-195 6.66e-15

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 75.45  E-value: 6.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK13589    5 INTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDE 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNtgtdglfqsavTFQVGAES 185
Cdd:PRK13589   85 QLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQ-----------EFQIGASS 153

                         170
                  ....*....|
gi 1425564977 186 SDTMTVNISS 195
Cdd:PRK13589  154 NQTIKATIGA 163
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 240-313 3.07e-13

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 64.27  E-value: 3.07e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 240 ITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQ 74
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 26-306 1.22e-12

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 67.35  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  26 INTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDE 105
Cdd:PRK07192    3 ISTNTLYSTMLRSIQQLQAGLGKLQQQMSTGKRILTPSDDPIASARLLELSREQSNNSQYADNIANLSNSLNNQEGHLSG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 106 MSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGT-SNTGTDGLFQSAVTF----- 179
Cdd:PRK07192   83 VNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLF--SGTaSNTQPITFDAAGGTYtyngn 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 180 ----QVGAESSDTMTVNISSQ----------LNTLVTDLSAISNSfSADQADTTGTAGVSggteltasgsanQMITSIST 245
Cdd:PRK07192  161 sdqrQVQVGEGVQMPVNVTGQsvfqgggldvFNTLDKLIDLLETP-ALPAADAALTAAVD------------EALGAIDD 227

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1425564977 246 AMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQT 306
Cdd:PRK07192  228 ALDNVLTVRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQMAALEA 288
PRK06663 PRK06663
flagellar hook-associated protein 3;
51-165 8.77e-11

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 62.40  E-value: 8.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  51 ERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDL 130
Cdd:PRK06663   29 NQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRARELAVQGANGTYQADDK 108

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1425564977 131 QAMQDEYDELGQQMSDMLQNTTYGGTNLFgvSGTS 165
Cdd:PRK06663  109 KKIAKEIDELLEDLVDIANARGADGYSIF--SGTK 141
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 36-305 1.72e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 61.46  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  36 VNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKD 115
Cdd:PRK08870   13 VNSMLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARE 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 116 LSTQAANGTYSDDDLQAMQDEYDELGQQMSDmLQNTT-------YGGT-------------------------------- 156
Cdd:PRK08870   93 LVVQAGNGSLSDSDRQAIATELQGLRDQLLN-LANSKdgsgnylFAGTqsgtqpfafdasgnvvysgdqgqrqvqvadsv 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 157 ----------------NLFGV----SGTSNTGTDGLFQSAVTFQVGAESSDTMTVNISS----QLNTLVTDLSAisNSFS 212
Cdd:PRK08870  172 qvatndpgdevfmsvpNGGGDyvpnANASNTGTGLLGSASITDPSDPVNGDTYTITFTDngagGTNTYVTDSST--GTVV 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 213 ADQADTTGTAGVSGGTELTASGSA--------------------------------------------NQMITSISTAMD 248
Cdd:PRK08870  250 TAQAYDAGQPINFNGVEVQISGAPaagdsftltpapqasifdtlddaiaalespvstpaadaalqnalAQALRNLDNALN 329

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1425564977 249 DVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 305
Cdd:PRK08870  330 NVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQ 386
PRK12687 PRK12687
flagellin; Reviewed
 23-311 5.21e-10

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 59.68  E-value: 5.21e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  23 MLSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADDAAGKQIANRLTAQSSgmgvALSNINDATAM-LQTADS 101
Cdd:PRK12687    1 MSSLLTNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNE----ALSAVSDALGLgAATVDT 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 102 MFDEMSDVLGRMKD----LSTQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTYGGTNLFGV--SGTSNTGTDGLFqS 175
Cdd:PRK12687   77 MYTALTSVVGDSKSgltaLKAKLVAAREPGIDRTKIQSEITAIQNDLKNTAGLAVFNGENWLSVdsSPSSYNATKSVV-S 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 176 AVTFQVGAESSDTMTVNISSqlnTLVTDLSAISNSFSADQADTTGTAGVSGGT----ELTASGS----ANQMITSISTAM 247
Cdd:PRK12687  156 SFTRVGGTVAIKTIDVNIAK---LALYDTNGSSTTGILDKTVTVGTATASVSSidihLLTDSATdltkLDGYIGIVDQAL 232

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 248 DDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITML 311
Cdd:PRK12687  233 GSVTQASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQAL 296
PRK08026 PRK08026
FliC/FljB family flagellin;
118-313 4.94e-07

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 50.90  E-value: 4.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 118 TQAANGTYSDDDLQAMQDEYDELGQQMSDMLQNTTY-----GGTNLFGVSGTSNTG--TDGLFQSAVTFQVGAESSDTMT 190
Cdd:PRK08026  300 TTNNAGAATKATLDALKKTASEGAATAKAALAAAGVtvadgVTAKTVKMSYTDKNGkvIDGGYAVKTGDDYYAADYDEIT 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 191 VNISSQLNTLVTDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQM-------------ITSISTAMDDVSQIQSKL 257
Cdd:PRK08026  380 GAISATTTYYTAKDGTTKTAANKLGGADGKTEVVTIDGKTYVASDGKQTtlaeaaatttenpLAALDAAIASIDKFRSSL 459

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1425564977 258 GASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQ 313
Cdd:PRK08026  460 GAVQNRLDSAVTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAK 515
PRK13589 PRK13589
flagellin A;
160-326 3.78e-06

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 48.49  E-value: 3.78e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 160 GVSGTSNTGTDGLFQSAVTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSADQADTTGTAGVsggtelTASGSANQM 239
Cdd:PRK13589  416 GYSVGSGKNYSVGLSQGIQIISSASAMSTVYNVSAGSGFSSGSGLSQFATMKTTAAGVKDETAGV------TTLKGAMAV 489

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 240 ITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSS 319
Cdd:PRK13589  490 MDIAETAITNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQ 569


                  ....*..
gi 1425564977 320 MVSSLLQ 326
Cdd:PRK13589  570 NVLKLLQ 576
flgL PRK12717
flagellar hook-associated protein 3;
51-195 4.12e-06

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 48.20  E-value: 4.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  51 ERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDL 130
Cdd:PRK12717   28 EQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLTDADR 107

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1425564977 131 QAMQDEYDELGQQMSDMLQNTTYGGTNLFGVSGTSNT----GTDGLF-----QSAVTFQVGaessDTMTVNISS 195
Cdd:PRK12717  108 KAIASELKQIEAQLLGLMNSKDANGQYLFAGSKSDTPpyvrNADGTYsyqgdQTQLSLQVG----DTLNLAAND 177
PRK08411 PRK08411
flagellin; Reviewed
 202-326 1.49e-05

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 46.52  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 202 TDLSAISNSFSADQADTTGTAGVSGGTELTASGSANQMITSISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVA 281
Cdd:PRK08411  448 SGFSSGSNLSQFAAMKTTAANVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAA 527

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1425564977 282 IGNIMDTDYATEASNMTKQQVLMQTGITMLKQSNSMSSMVSSLLQ 326
Cdd:PRK08411  528 ESQIRDVDFAAESANYSKANILAQSGSYAMAQANAVQQNVLRLLQ 572
flgL PRK08913
flagellin;
87-305 3.13e-05

flagellin;


Pssm-ID: 236349 [Multi-domain]  Cd Length: 301  Bit Score: 44.77  E-value: 3.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  87 SNINDATAMLQTADSMFDEMSDVLGRMKDLSTQAANGTYSDDDlqAMQDEYDELGQQMSDMLqNTTYGGTNLFGVSGTSN 166
Cdd:PRK08913   66 DAATLAQSKVQVMYSAVGQIADLAQQLRSSLSAASTGTSTDAT--SAAASAQQALTQLATLL-NTQYGGQYVFAGADTTT 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 167 TGTDglFQSAVTFQVGAESSDTMTVNISSQLNTL-VTDLSAISNSFSADQA---DTTGTAGVSGGTELTASGSANQMITS 242
Cdd:PRK08913  143 APVD--LSSFAAGADSASSADTSYYQGDDTLTSVrVSATQGVSYGVTADNSafeQLMRALMLVANSSSLSSSTLSQALDL 220

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 243 ISTAMDDVSQIQSKLGASINRLNDTANNLTSMQDNTEVAIGNIMDTDYATEASNMTKQQVLMQ 305
Cdd:PRK08913  221 ASTAVDDLGDVQSRLGNAASRLTAASSRQTEYKSFAETLLSDLTGVDVAAVTAQLSTYQTQLT 283
flgL PRK08073
flagellar hook-associated protein 3;
24-303 9.35e-04

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 40.35  E-value: 9.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  24 LSINTNNASMAAVNAISKSSSSLSTSMERLATGNRINSSADD--AAGKQIA-NRLTAQSSGMGvalSNINDATAMLQTAD 100
Cdd:PRK08073    1 MRVSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDplAASKSFAiQHSLANIEQMQ---KDVADSKNVLNQTE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 101 SMFDEMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSdMLQNTTYGGTNLFGVSGTSNT--GTDGLFQSA-- 176
Cdd:PRK08073   78 NTLSGMSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVV-YLANTKEQGRYVFGGDSAEKKpfTEDGTYQGGte 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977 177 -VTFQVGAESSDTMTVNISSQLNTLVTDLSAISNSFSadQADTTGTAGVSGGTELTASGSANQMiTSISTAMDDVSQIQS 255
Cdd:PRK08073  157 dVNWRLNDGYEVKAFRNGEALLTPVINTLKKMVDAMQ--TGDQKALQPLLEENKKNLDIIINRT-TEVGGTMNTVETFKT 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1425564977 256 KLGASINRLNDTANNLTSMqdNTEVAIGNIMDTDYATEA-----SNMTKQQVL 303
Cdd:PRK08073  234 ILSEQNLALQENRKEIEDV--DLAVAISDLAYINATYEAtlkavSTMSKTSIL 284
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
25-171 4.28e-03

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 38.79  E-value: 4.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1425564977  25 SINTNNASMAAVNAISksssslstsmERLATGNRINSSADDAAGKQIANRLTAQSSGMGVALSNINDATAMLQTADSMFD 104
Cdd:PRK14692   12 SVNNSMGGQSALYQIS----------QQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1425564977 105 EMSDVLGRMKDLSTQAANGTYSDDDLQAMQDEYDELGQQMSDmLQNTTYGGTNLFGVSGTSNTGTDG 171
Cdd:PRK14692   82 DMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQ-LANTSVNGQYLFAGSQVANKPFDS 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH