NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2089724208|gb|QZX51618|]
View 

hypothetical protein, partial [Volvulina steinii]

Protein Classification

KRI1 family protein( domain architecture ID 10524403)

KRI1 family protein similar to Saccharomyces cerevisiae KRI1 (KRR1-interacting protein 1) that is required for 40S ribosome biogenesis

Gene Ontology:  GO:0042254
PubMed:  11027267

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 540-639 1.45e-25

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


:

Pssm-ID: 463756  Cd Length: 89  Bit Score: 101.03  E-value: 1.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724208 540 AEMQRLLEEYYKLDYEDNVGGIKTRFRYKEVPASTFGLSVDDILRLDDKALNQVAGIKRLAPYREDAAKQRPnykalemv 619
Cdd:pfam12936   1 KKLEEYVDEYYKLDYEDIIGDLPTRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKD-------- 72

                          90       100
                  ....*....|....*....|....
gi 2089724208 620 kgeivkhqRRQYKK----REWQKR 639
Cdd:pfam12936  73 --------KKKYKKkarlREWRKK 88
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 397-460 1.18e-11

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


:

Pssm-ID: 461569  Cd Length: 103  Bit Score: 61.90  E-value: 1.18e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2089724208 397 VKRLKNLKKQEIENKLDKLRHV-----AGAAAPAAASLDDMLEGDFDPEEWDKKMAAAFDDAYYDAEED 460
Cdd:pfam05178  14 LKRLKKLKREEIEEKLKKIKEAagnegAGLKELTDEEWTDLLDGDFDPDEWDRKMKKIFGEDYYAEEDD 82
 
Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 540-639 1.45e-25

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


Pssm-ID: 463756  Cd Length: 89  Bit Score: 101.03  E-value: 1.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724208 540 AEMQRLLEEYYKLDYEDNVGGIKTRFRYKEVPASTFGLSVDDILRLDDKALNQVAGIKRLAPYREDAAKQRPnykalemv 619
Cdd:pfam12936   1 KKLEEYVDEYYKLDYEDIIGDLPTRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKD-------- 72

                          90       100
                  ....*....|....*....|....
gi 2089724208 620 kgeivkhqRRQYKK----REWQKR 639
Cdd:pfam12936  73 --------KKKYKKkarlREWRKK 88
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 397-460 1.18e-11

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


Pssm-ID: 461569  Cd Length: 103  Bit Score: 61.90  E-value: 1.18e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2089724208 397 VKRLKNLKKQEIENKLDKLRHV-----AGAAAPAAASLDDMLEGDFDPEEWDKKMAAAFDDAYYDAEED 460
Cdd:pfam05178  14 LKRLKKLKREEIEEKLKKIKEAagnegAGLKELTDEEWTDLLDGDFDPDEWDRKMKKIFGEDYYAEEDD 82
 
Name Accession Description Interval E-value
Kri1_C pfam12936
KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required ...
 540-639 1.45e-25

KRI1-like family C-terminal; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus. This is the C-terminal domain of the family.


Pssm-ID: 463756  Cd Length: 89  Bit Score: 101.03  E-value: 1.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2089724208 540 AEMQRLLEEYYKLDYEDNVGGIKTRFRYKEVPASTFGLSVDDILRLDDKALNQVAGIKRLAPYREDAAKQRPnykalemv 619
Cdd:pfam12936   1 KKLEEYVDEYYKLDYEDIIGDLPTRFKYREVSPNSFGLTAREILLADDKELNQWVSLKKLAPYRDEEKEKKD-------- 72

                          90       100
                  ....*....|....*....|....
gi 2089724208 620 kgeivkhqRRQYKK----REWQKR 639
Cdd:pfam12936  73 --------KKKYKKkarlREWRKK 88
Kri1 pfam05178
KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ...
 397-460 1.18e-11

KRI1-like family; The yeast member of this family (Kri1p) is found to be required for 40S ribosome biogenesis in the nucleolus.


Pssm-ID: 461569  Cd Length: 103  Bit Score: 61.90  E-value: 1.18e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2089724208 397 VKRLKNLKKQEIENKLDKLRHV-----AGAAAPAAASLDDMLEGDFDPEEWDKKMAAAFDDAYYDAEED 460
Cdd:pfam05178  14 LKRLKKLKREEIEEKLKKIKEAagnegAGLKELTDEEWTDLLDGDFDPDEWDRKMKKIFGEDYYAEEDD 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH