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Conserved domains on  [gi|2085706785|gb|QZJ84530|]
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pentatricopeptide repeat-containing protein 90, partial [Lippia lupulina]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 4-339 5.53e-53

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 186.98  E-value: 5.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   4 SHSVTVANTLLHMYGKCGgDVRQVFKVFDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALA 83
Cdd:PLN03077  118 SLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  84 CSNLnreDGLRLGRQVHGYSLRVD-DRKTFTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEAL 162
Cdd:PLN03077  197 CGGI---PDLARGREVHAHVVRFGfELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 163 EYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYVFRNDDLTENSFVASaLVDMYCNCKQVVSGSRVFDSSPDR 242
Cdd:PLN03077  274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRMETK 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 243 RLGLWNAMLAGYTQNGFYMEALMLFmKMIVVSGILPNPTTMSSVLPACVHCGAFSDKEAMHGYVMKLGLGSDRYVQNALM 322
Cdd:PLN03077  353 DAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

                         330
                  ....*....|....*..
gi 2085706785 323 DLYSRLGKIDNSRYIFH 339
Cdd:PLN03077  432 EMYSKCKCIDKALEVFH 448
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 4-339 5.53e-53

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 186.98  E-value: 5.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   4 SHSVTVANTLLHMYGKCGgDVRQVFKVFDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALA 83
Cdd:PLN03077  118 SLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  84 CSNLnreDGLRLGRQVHGYSLRVD-DRKTFTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEAL 162
Cdd:PLN03077  197 CGGI---PDLARGREVHAHVVRFGfELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 163 EYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYVFRNDDLTENSFVASaLVDMYCNCKQVVSGSRVFDSSPDR 242
Cdd:PLN03077  274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRMETK 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 243 RLGLWNAMLAGYTQNGFYMEALMLFmKMIVVSGILPNPTTMSSVLPACVHCGAFSDKEAMHGYVMKLGLGSDRYVQNALM 322
Cdd:PLN03077  353 DAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

                         330
                  ....*....|....*..
gi 2085706785 323 DLYSRLGKIDNSRYIFH 339
Cdd:PLN03077  432 EMYSKCKCIDKALEVFH 448
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 140-189 8.49e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 8.49e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2085706785 140 RDMVSWNTIISALSQNNSFYEALEYFRSMKGEGFKPDGVTISSVLPACSH 189
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 143-176 2.17e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.90  E-value: 2.17e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2085706785 143 VSWNTIISALSQNNSFYEALEYFRSMKGEGFKPD 176
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 4-339 5.53e-53

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 186.98  E-value: 5.53e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   4 SHSVTVANTLLHMYGKCGgDVRQVFKVFDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALA 83
Cdd:PLN03077  118 SLGVRLGNAMLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  84 CSNLnreDGLRLGRQVHGYSLRVD-DRKTFTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEAL 162
Cdd:PLN03077  197 CGGI---PDLARGREVHAHVVRFGfELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL 273

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 163 EYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYVFRNDDLTENSFVASaLVDMYCNCKQVVSGSRVFDSSPDR 242
Cdd:PLN03077  274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRMETK 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 243 RLGLWNAMLAGYTQNGFYMEALMLFmKMIVVSGILPNPTTMSSVLPACVHCGAFSDKEAMHGYVMKLGLGSDRYVQNALM 322
Cdd:PLN03077  353 DAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

                         330
                  ....*....|....*..
gi 2085706785 323 DLYSRLGKIDNSRYIFH 339
Cdd:PLN03077  432 EMYSKCKCIDKALEVFH 448
PLN03077 PLN03077
Protein ECB2; Provisional
 7-331 3.62e-51

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 181.59  E-value: 3.62e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   7 VTVANTLLHMYGKCGgDVRQVFKVFDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALACSN 86
Cdd:PLN03077  323 VSVCNSLIQMYLSLG-SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  87 LNREDglrLGRQVHgyslRVDDRKTFTN-----NSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEA 161
Cdd:PLN03077  402 LGDLD---VGVKLH----ELAERKGLISyvvvaNALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 162 LEYFRSMKGEgFKPDGVTISSVLPACSHLELLDLGKEIHAYVFRNdDLTENSFVASALVDMYCNCKQVVSGSRVFdSSPD 241
Cdd:PLN03077  475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHE 551

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 242 RRLGLWNAMLAGYTQNGFYMEALMLFMKMiVVSGILPNPTTMSSVLPACVHCGAFSDK-EAMHGYVMKLGLGSDRYVQNA 320
Cdd:PLN03077  552 KDVVSWNILLTGYVAHGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVTQGlEYFHSMEEKYSITPNLKHYAC 630

                         330
                  ....*....|.
gi 2085706785 321 LMDLYSRLGKI 331
Cdd:PLN03077  631 VVDLLGRAGKL 641
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 11-299 7.59e-50

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 176.60  E-value: 7.59e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  11 NTLLHMYGKCG--GDVRQVFkvfDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALACSNLN 88
Cdd:PLN03081  162 NRVLLMHVKCGmlIDARRLF---DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  89 redGLRLGRQVHGYSLR---VDDrkTFTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEALEYF 165
Cdd:PLN03081  239 ---SARAGQQLHCCVLKtgvVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLY 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 166 RSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYVFRND---DLTENsfvaSALVDMYCNCKQVVSGSRVFDSSPDR 242
Cdd:PLN03081  314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGfplDIVAN----TALVDLYSKWGRMEDARNVFDRMPRK 389

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2085706785 243 RLGLWNAMLAGYTQNGFYMEALMLFMKMIvVSGILPNPTTMSSVLPACVHCGaFSDK 299
Cdd:PLN03081  390 NLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSG-LSEQ 444
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 112-338 4.45e-36

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 138.08  E-value: 4.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 112 FTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEALEYFRSMKGEGFKPDGVTISSVLPACSHLE 191
Cdd:PLN03081  159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 192 LLDLGKEIHAYVFRNdDLTENSFVASALVDMYCNCKQVVSGSRVFDSSPDRRLGLWNAMLAGYTQNGFYMEALMLFMKMi 271
Cdd:PLN03081  239 SARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM- 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2085706785 272 VVSGILPNPTTMSSVLPACVHCGAFSDKEAMHGYVMKLGLGSDRYVQNALMDLYSRLGKIDNSRYIF 338
Cdd:PLN03081  317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 9-199 3.00e-29

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 118.43  E-value: 3.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   9 VANTLLHMYGKCGgDVRQVFKVFDRMPQRDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFTLVSVALACSNLN 88
Cdd:PLN03081  261 VSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  89 RedgLRLGRQVH------GYSLRVddrktFTNNSLMTMYAKLGKIEDAKIVFESFAHRDMVSWNTIISALSQNNSFYEAL 162
Cdd:PLN03081  340 L---LEHAKQAHaglirtGFPLDI-----VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2085706785 163 EYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEI 199
Cdd:PLN03081  412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
PLN03077 PLN03077
Protein ECB2; Provisional
 146-338 8.60e-17

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 81.43  E-value: 8.60e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 146 NTIISALSQNNSFYEALEYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYVfrndDLTENSF---VASALVDM 222
Cdd:PLN03077   55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA----LSSHPSLgvrLGNAMLSM 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785 223 YCNCKQVVSGSRVFDSSPDRRLGLWNAMLAGYTQNGFYMEALMLFMKMIVVsGILPNPTTMSSVLPACVHCGAFSDKEAM 302
Cdd:PLN03077  131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREV 209

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2085706785 303 HGYVMKLGLGSDRYVQNALMDLYSRLGKIDNSRYIF 338
Cdd:PLN03077  210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 9-287 8.21e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 50.65  E-value: 8.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785    9 VANTLLHMYGKCGGdVRQVFKVFDRMPQR------DQVSWNSMINALCKYEESELALEAFCLMGLDGIE--PSSFTLV-- 78
Cdd:PLN03218   544 VFNALISACGQSGA-VDRAFDVLAEMKAEthpidpDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKgtPEVYTIAvn 622

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785   79 ------SVALACSNLnrEDGLRLGRQ-----------VHGYSLRVDD--------RK------TFTNNSLMTMYAKLGKI 127
Cdd:PLN03218   623 scsqkgDWDFALSIY--DDMKKKGVKpdevffsalvdVAGHAGDLDKafeilqdaRKqgiklgTVSYSSLMGACSNAKNW 700

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  128 EDAKIVFE---SFAHRDMVS-WNTIISALSQNNSFYEALEYFRSMKGEGFKPDGVTISSVLPACSHLELLDLGKEIHAYV 203
Cdd:PLN03218   701 KKALELYEdikSIKLRPTVStMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2085706785  204 fRNDDLTENSFVASALVDMycnCKQ-----VVSGSRV--FDSSPDRRLGLWNAMlagytqngfymeALMLFMKMIvVSGI 276
Cdd:PLN03218   781 -KEDGIKPNLVMCRCITGL---CLRrfekaCALGEPVvsFDSGRPQIENKWTSW------------ALMVYRETI-SAGT 843

                          330
                   ....*....|.
gi 2085706785  277 LPNPTTMSSVL 287
Cdd:PLN03218   844 LPTMEVLSQVL 854
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 140-189 8.49e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 45.05  E-value: 8.49e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2085706785 140 RDMVSWNTIISALSQNNSFYEALEYFRSMKGEGFKPDGVTISSVLPACSH 189
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 37-76 5.07e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 43.12  E-value: 5.07e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2085706785  37 RDQVSWNSMINALCKYEESELALEAFCLMGLDGIEPSSFT 76
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYT 40
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 11-51 9.41e-06

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.35  E-value: 9.41e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2085706785  11 NTLLHMYGKCGgDVRQVFKVFDRMPQR----DQVSWNSMINALCK 51
Cdd:pfam13041   7 NTLINGYCKKG-KVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 143-176 2.17e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.90  E-value: 2.17e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 2085706785 143 VSWNTIISALSQNNSFYEALEYFRSMKGEGFKPD 176
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 143-173 6.40e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 6.40e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2085706785 143 VSWNTIISALSQNNSFYEALEYFRSMKGEGF 173
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 40-74 3.14e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.43  E-value: 3.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 2085706785  40 VSWNSMINALCKYEESELALEAFCLMGLDGIEPSS 74
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 247-292 6.65e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.96  E-value: 6.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2085706785 247 WNAMLAGYTQNGFYMEALMLFMKMiVVSGILPNPTTMSSVLPACVH 292
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEM-KKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 247-271 1.77e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 1.77e-03
                          10        20
                  ....*....|....*....|....*
gi 2085706785 247 WNAMLAGYTQNGFYMEALMLFMKMI 271
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMK 27
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 40-70 2.29e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.13  E-value: 2.29e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2085706785  40 VSWNSMINALCKYEESELALEAFCLMGLDGI 70
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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