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Conserved domains on  [gi|2064897161|gb|QXJ50209|]
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cytochrome b, partial (mitochondrion) [Trichomycterus brunoi]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 733.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00131   16 DALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00131   96 LHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00131  176 TRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDN 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00131  256 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLIL 335

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00131  336 TWIGGMPVEHPFIIIGQVASVLYFSLF 362
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 733.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00131   16 DALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00131   96 LHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00131  176 TRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDN 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00131  256 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLIL 335

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00131  336 TWIGGMPVEHPFIIIGQVASVLYFSLF 362
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-347 9.77e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 363.73  E-value: 9.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSylYKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSID 156
Cdd:COG1290   105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 157 NATLTRFFAFH-FLLPFAVVAATALHALFLHETGSNNPIGI----NSDADKITFHPYFSYKDMLGFVILITLLAALALFS 231
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 232 PNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFL 309
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2064897161 310 FWTLVANVMILTWIGGMPVehPFIIIGQIASVLYFTLF 347
Cdd:COG1290   341 GVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFF 376
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-191 5.98e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.39  E-value: 5.98e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:cd00284     8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSY--LYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNA 158
Cdd:cd00284    88 LHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2064897161 159 TLTRFFAFHFLLPFAVVAATALHALFLHETGSN 191
Cdd:cd00284   168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-189 7.89e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.61  E-value: 7.89e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   3 LIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 82
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  83 IGRGLYYG--SYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETG 189
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-315 3.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 3.18e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHT-SKQQGLTFRPV--TQFLFWTLVA 315
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 733.77  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00131   16 DALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00131   96 LHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00131  176 TRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDN 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00131  256 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLIL 335

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00131  336 TWIGGMPVEHPFIIIGQVASVLYFSLF 362
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 683.94  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00119   17 NSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00119   97 LHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00119  177 TRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPEN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00119  257 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLIL 336

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00119  337 TWIGSQPVEHPFIIIGQLASILYFTIL 363
CYTB MTH00074
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 660.99  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00074   17 NSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00074   97 LHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00074  177 TRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00074  257 FTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLIL 336

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00074  337 TWIGGQPVEDPFIEIGQAASILYFLLF 363
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 654.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00100   16 HSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLF 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00100   96 LHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00100  176 TRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDN 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00100  256 YTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTL 335

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00100  336 TWIGGQPVEHPFIIIGQLASILYFLII 362
CYTB MTH00191
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 638.11  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00191   13 GSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00191   93 LHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00191  173 TRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPEN 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00191  253 FIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILL 332

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00191  333 TWLGGQPVEDPFILLGQISSFLYFFLF 359
CYTB MTH00156
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 623.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00156    6 NSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIY 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00156   86 LHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATL 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00156  166 TRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPEN 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00156  246 FIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILL 325

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00156  326 TWIGARPVEEPYILTGQILTILYFLYF 352
CYTB MTH00145
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 589.95  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00145   17 GSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00145   97 LHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00145  177 KRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPEN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00145  257 FIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFIL 336

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00145  337 TWIGACPVEEPYETIGQVFTVLYFLFF 363
CYTB MTH00034
cytochrome b; Validated
 1-347 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 581.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00034   16 SSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLY 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00034   96 FHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATL 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00034  176 TRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPEN 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00034  256 FIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFIL 335

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00034  336 TWIGSQPVEYPFILLGQVASVLYFSLF 362
CYTB MTH00016
cytochrome b; Validated
 1-347 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 549.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00016   17 GSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00016   97 LHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00016  177 TRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPEN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00016  257 FIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLL 336

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00016  337 TWIGGRPVEPPYEFLGQIFTVFYFFYF 363
CYTB MTH00022
cytochrome b; Validated
 3-347 4.97e-179

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 500.77  E-value: 4.97e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   3 LIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 82
Cdd:MTH00022   17 LVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIH 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  83 IGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLTR 162
Cdd:MTH00022   97 IGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNR 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 163 FFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPENFT 242
Cdd:MTH00022  177 FFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFI 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMILTW 322
Cdd:MTH00022  257 QANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTW 336

                         330       340
                  ....*....|....*....|....*
gi 2064897161 323 IGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00022  337 IGSQVVEEPFILIGQLLSFFYFFYF 361
CYTB MTH00224
cytochrome b; Provisional
 2-347 2.87e-178

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 499.06  E-value: 2.87e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   2 ALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYL 81
Cdd:MTH00224   18 SLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  82 HIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLT 161
Cdd:MTH00224   98 HVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLN 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 162 RFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPENF 241
Cdd:MTH00224  178 RFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 242 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMILT 321
Cdd:MTH00224  258 LMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337

                         330       340
                  ....*....|....*....|....*.
gi 2064897161 322 WIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00224  338 WIGGRPVEDPFEGIGQVFTILYFSYF 363
CYTB MTH00053
cytochrome b; Provisional
 1-347 8.27e-175

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 490.37  E-value: 8.27e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00053   17 SMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVY 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00053   97 FHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATL 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPEN 240
Cdd:MTH00053  177 NRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAEN 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 241 FTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMIL 320
Cdd:MTH00053  257 FKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLL 336

                         330       340
                  ....*....|....*....|....*..
gi 2064897161 321 TWIGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00053  337 TWIGGQPVEEPYILIGQIASIFYFAYF 363
CYTB MTH00033
cytochrome b; Provisional
 1-347 2.64e-137

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 395.08  E-value: 2.64e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFS--PNLLGDP 238
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 239 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVM 318
Cdd:MTH00033  253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                         330       340       350
                  ....*....|....*....|....*....|
gi 2064897161 319 ILTWIGGMPV-EHPFIIIGQIASVLYFTLF 347
Cdd:MTH00033  333 ILTWIGSAPAgADPYVLIGRIATIFYFGYF 362
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-347 9.77e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 363.73  E-value: 9.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSylYKE----TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSID 156
Cdd:COG1290   105 LHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPG 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 157 NATLTRFFAFH-FLLPFAVVAATALHALFLHETGSNNPIGI----NSDADKITFHPYFSYKDMLGFVILITLLAALALFS 231
Cdd:COG1290   183 DATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFF 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 232 PNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFL 309
Cdd:COG1290   263 PI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTAL 340

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2064897161 310 FWTLVANVMILTWIGGMPVehPFIIIGQIASVLYFTLF 347
Cdd:COG1290   341 GVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFF 376
CYTB MTH00086
cytochrome b; Provisional
 3-347 6.74e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 357.33  E-value: 6.74e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   3 LIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 82
Cdd:MTH00086    7 VVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLH 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  83 IGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLTR 162
Cdd:MTH00086   87 IFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKF 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 163 FFAFHFLLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILItLLAALALFSPNLLGDPENFT 242
Cdd:MTH00086  167 FFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQqglTFRPVTQFLFWTLVANVMILTW 322
Cdd:MTH00086  246 EADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSW 322

                         330       340
                  ....*....|....*....|....*
gi 2064897161 323 IGGMPVEHPFIIIGQIASVLYFTLF 347
Cdd:MTH00086  323 LGQCLVEYPFLFLSQIFSFIYFFLI 347
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-191 5.98e-91

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 270.39  E-value: 5.98e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   1 NALIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIY 80
Cdd:cd00284     8 NSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLY 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  81 LHIGRGLYYGSY--LYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNA 158
Cdd:cd00284    88 LHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNA 167

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2064897161 159 TLTRFFAFHFLLPFAVVAATALHALFLHETGSN 191
Cdd:cd00284   168 TLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 3-342 4.38e-90

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 273.78  E-value: 4.38e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   3 LIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 82
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  83 IGRGLYYGSYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLTR 162
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 163 FFAFHFLLPFAVVAATALHALFLHETGSNNPIGI-NSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPENF 241
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 242 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMLVPllhtSKQQGLTFRPVTQFLFWTLVANVMILT 321
Cdd:MTH00046  249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                         330       340
                  ....*....|....*....|.
gi 2064897161 322 WIGGMPVEHPFIIIGQIASVL 342
Cdd:MTH00046  324 YLGGCHPEYPYLLISQLFSVL 344
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
3-189 7.89e-85

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 254.61  E-value: 7.89e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   3 LIDLPAPSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLH 82
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  83 IGRGLYYG--SYLYKETWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATL 160
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2064897161 161 TRFFAFHFLLPFAVVAATALHALFLHETG 189
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 192-339 5.00e-52

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 168.98  E-value: 5.00e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 192 NPIGINSDADKITFHPYFSYKDMLGFVILITLLAALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 271
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2064897161 272 KLGGVLALLFSILVLMLVPLLHTSKQQGlTFRPVTQFLFWTLVANVMILTWIGGMPVEHPFIIIGQIA 339
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
243-343 8.73e-47

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 153.79  E-value: 8.73e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHTSKQQGLTFRPVTQFLFWTLVANVMILTW 322
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2064897161 323 IGGMPVEHPFIIIGQIASVLY 343
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
73-238 2.75e-46

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 155.09  E-value: 2.75e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  73 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIW 150
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161 151 GGFSIDNATLTRFFAFHF-LLPFAVVAATALHALFLHETGSNNPIGINSDADKITFHPYFSYKDMLGFVILITLLAALAL 229
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2064897161 230 FSPNLLGDP 238
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 18-194 7.86e-39

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 137.54  E-value: 7.86e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  18 FGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLHIGRGLYYGSYLYKE- 96
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  97 -TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLTRFFAFH-FLLPFAV 174
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170       180
                  ....*....|....*....|
gi 2064897161 175 VAATALHALFLHETGSNNPI 194
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 9-194 5.42e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 119.06  E-value: 5.42e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161   9 PSNISTWWNFGSLLLLCLIMQILTGLFLAMHYTSDISTAFSSVVHICRDVNYGWVIRNLHANGASFFFICIYLHIGRGLY 88
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2064897161  89 YGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGDTLVQWIWGGFSIDNATLTRFFAF 166
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 2064897161 167 H-FLLPFAVVAATALHALFLHETGSNNPI 194
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 243-315 1.53e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 61.94  E-value: 1.53e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLL-HTSKQQGLTFRPV--TQFLFWTLVA 315
Cdd:CHL00058   65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVatTVFLIGTAVA 140
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 243-314 1.55e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.73  E-value: 1.55e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHT-SKQQGLTFRPV--TQFLFWTLV 314
Cdd:COG5679    66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVatAVFLFGTLV 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 243-315 3.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 60.97  E-value: 3.18e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2064897161 243 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMLVPLLHT-SKQQGLTFRPV--TQFLFWTLVA 315
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVatTVFLFGTVVA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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