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Conserved domains on  [gi|2069583229|gb|QXJ38538|]
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Octanoyl-[GcvH]:protein N-octanoyltransferase [Parageobacillus caldoxylosilyticus]

Protein Classification

biotin/lipoate A/B protein ligase family protein( domain architecture ID 10000572)

biotin/lipoate A/B protein ligase family protein is responsible for attaching biotin and lipoic acid to a specific lysine at the active site of biotin and lipoate-dependent enzymes, respectively

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
12-261 1.68e-66

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


:

Pssm-ID: 439865  Cd Length: 246  Bit Score: 207.39  E-value: 1.68e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  12 RIIDQshfgPMFDARQSFAIDDTLCTSVGTGQSDAVVRTWVHYNTVVLGIQDTKLPHLQEAvsFLETNQYKVIVRNSGGL 91
Cdd:COG0095     1 RLIDS----GSTDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVNLE--YVEEHGIPVVRRISGGG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  92 AVVLDDGVLNVSLVFPETTKAIDIHQGYEAMWQLIKAMFSSYGKVIEAReivgsycpGSYDLSIDGKKFAGISQRRVRGG 171
Cdd:COG0095    75 AVYHDPGNLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS--------GRNDIVVDGRKISGNAQRRRKGA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 172 VAVQIYLCINGSGSARAELIRRFYElglqgeatKFSYPII--VPSTMASLSELLGDELTIPAVMLLLLRTLQSFGGHLYS 249
Cdd:COG0095   147 VLHHGTLLVDGDLEKLAKVLRVPYE--------KLRDKGIksVRSRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEP 218
                         250
                  ....*....|..
gi 2069583229 250 STLTEEELSLYE 261
Cdd:COG0095   219 GELTDEELEAAE 230
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
12-261 1.68e-66

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 207.39  E-value: 1.68e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  12 RIIDQshfgPMFDARQSFAIDDTLCTSVGTGQSDAVVRTWVHYNTVVLGIQDTKLPHLQEAvsFLETNQYKVIVRNSGGL 91
Cdd:COG0095     1 RLIDS----GSTDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVNLE--YVEEHGIPVVRRISGGG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  92 AVVLDDGVLNVSLVFPETTKAIDIHQGYEAMWQLIKAMFSSYGKVIEAReivgsycpGSYDLSIDGKKFAGISQRRVRGG 171
Cdd:COG0095    75 AVYHDPGNLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS--------GRNDIVVDGRKISGNAQRRRKGA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 172 VAVQIYLCINGSGSARAELIRRFYElglqgeatKFSYPII--VPSTMASLSELLGDELTIPAVMLLLLRTLQSFGGHLYS 249
Cdd:COG0095   147 VLHHGTLLVDGDLEKLAKVLRVPYE--------KLRDKGIksVRSRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEP 218
                         250
                  ....*....|..
gi 2069583229 250 STLTEEELSLYE 261
Cdd:COG0095   219 GELTDEELEAAE 230
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
11-240 4.90e-51

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 166.28  E-value: 4.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  11 WRIIDQSHFGPMFdarqSFAIDDTLCTSVGtGQSDAVVRTWVHYNTVVLGIQDTKLPHLQEAvsFLETNQYKVIVRNSGG 90
Cdd:cd16443     1 MRLIDSSGDPPAE----NLALDEALLRSVA-APPTLRLYLWQNPPTVVIGRFQNPLEEVNLE--YAEEDGIPVVRRPSGG 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  91 LAVVLDDGVLNVSLVFPETTKAIDihQGYEAMWQLIKAMFSSYGKVIEAREivgsycPGSYDLSIDGKKFAGISQRRVRG 170
Cdd:cd16443    74 GAVFHDLGNLNYSLILPKEHPSID--ESYRALSQPVIKALRKLGVEAEFGG------VGRNDLVVGGKKISGSAQRRTKG 145
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 171 GVAVQIYLCINGSGSARAELIRRFYELGLQGEatkfsyPIIVPSTMASLSELLGDELTIPAVMLLLLRTL 240
Cdd:cd16443   146 RILHHGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
73-183 2.75e-13

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 65.16  E-value: 2.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  73 VSFLETNQYKVIVRNSGGL----AVVLD-DGVLNVSLVFPETTK----AIDIHQGYEAMWQLIKAMFSSygkvieAREIV 143
Cdd:pfam03099  17 SSELESGGVVVVRRQTGGRgrggNVWHSpKGCLTYSLLLSKEHPnvdpSVLEFYVLELVLAVLEALGLY------KPGIS 90
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2069583229 144 GSYCP--GSYDLSIDGKKFAGISQRRVRGGVAVQIYLCINGS 183
Cdd:pfam03099  91 GIPCFvkWPNDLYVNGRKLAGILQRSTRGGTLHHGVIGLGVN 132
 
Name Accession Description Interval E-value
LplA COG0095
Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part ...
12-261 1.68e-66

Lipoate-protein ligase A [Coenzyme transport and metabolism]; Lipoate-protein ligase A is part of the Pathway/BioSystem: Lipoate biosynthesis


Pssm-ID: 439865  Cd Length: 246  Bit Score: 207.39  E-value: 1.68e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  12 RIIDQshfgPMFDARQSFAIDDTLCTSVGTGQSDAVVRTWVHYNTVVLGIQDTKLPHLQEAvsFLETNQYKVIVRNSGGL 91
Cdd:COG0095     1 RLIDS----GSTDPAFNLALDEALLEEVAEGEDPPTLRLWRNPPTVVIGRFQNVLPEVNLE--YVEEHGIPVVRRISGGG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  92 AVVLDDGVLNVSLVFPETTKAIDIHQGYEAMWQLIKAMFSSYGKVIEAReivgsycpGSYDLSIDGKKFAGISQRRVRGG 171
Cdd:COG0095    75 AVYHDPGNLNYSLILPEDDVPLSIEESYRKLLEPILEALRKLGVDAEFS--------GRNDIVVDGRKISGNAQRRRKGA 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 172 VAVQIYLCINGSGSARAELIRRFYElglqgeatKFSYPII--VPSTMASLSELLGDELTIPAVMLLLLRTLQSFGGHLYS 249
Cdd:COG0095   147 VLHHGTLLVDGDLEKLAKVLRVPYE--------KLRDKGIksVRSRVTNLSELLGTDITREEVKEALLEAFAEVLGVLEP 218
                         250
                  ....*....|..
gi 2069583229 250 STLTEEELSLYE 261
Cdd:COG0095   219 GELTDEELEAAE 230
LplA cd16443
lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide ...
11-240 4.90e-51

lipoate-protein ligase; Lipoate-protein ligase A (LplA) catalyzes the formation of an amide linkage between free lipoic acid and a specific lysine residue of the lipoyl domain in lipoate dependent enzymes, similar to the biotinylation reaction mediated by biotinyl protein ligase (BPL). The two step reaction includes activation of exogenously supplied lipoic acid at the expense of ATP to lipoyl-AMP and then transfer to the epsilon-amino group of a specific lysine residue of the lipoyl domain of the target protein.


Pssm-ID: 319742  Cd Length: 209  Bit Score: 166.28  E-value: 4.90e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  11 WRIIDQSHFGPMFdarqSFAIDDTLCTSVGtGQSDAVVRTWVHYNTVVLGIQDTKLPHLQEAvsFLETNQYKVIVRNSGG 90
Cdd:cd16443     1 MRLIDSSGDPPAE----NLALDEALLRSVA-APPTLRLYLWQNPPTVVIGRFQNPLEEVNLE--YAEEDGIPVVRRPSGG 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  91 LAVVLDDGVLNVSLVFPETTKAIDihQGYEAMWQLIKAMFSSYGKVIEAREivgsycPGSYDLSIDGKKFAGISQRRVRG 170
Cdd:cd16443    74 GAVFHDLGNLNYSLILPKEHPSID--ESYRALSQPVIKALRKLGVEAEFGG------VGRNDLVVGGKKISGSAQRRTKG 145
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 171 GVAVQIYLCINGSGSARAELIRRFYELGLQGEatkfsyPIIVPSTMASLSELLGDELTIPAVMLLLLRTL 240
Cdd:cd16443   146 RILHHGTLLVDVDLEKLARVLNVPYEKLKSKG------PKSVRSRVTNLSELLGRDITVEEVKNALLEAF 209
BPL_LplA_LipB cd16435
biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), ...
24-243 6.44e-19

biotin-lipoate ligase family; This family includes biotin protein ligase (BPL), lipoate-protein ligase A (LplA) and octanoyl-[acyl carrier protein]-protein acyltransferase (LipB). Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LplA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes.


Pssm-ID: 319740  Cd Length: 198  Bit Score: 82.20  E-value: 6.44e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  24 DARQSFAIDDTLCTSVGTGQSDaVVRTWVHYNTVVLGIQDTKLPHLQEAVsfLETNQYKVIVRNSGGLAVVLDDGVLNVS 103
Cdd:cd16435     9 DYESAWAAQEKSLRENVSNQSS-TLLLWEHPTTVTLGRLDRELPHLELAK--KIERGYELVVRNRGGRAVSHDPGQLVFS 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 104 LVFPETtKAIDIHQGYEAMWQLIKAMFSSYGKVIEAReivgsycPGSYDLSIDGKKFAGISQRRVRGGVAVQIYLCINGS 183
Cdd:cd16435    86 PVIGPN-VEFMISKFNLIIEEGIRDAIADFGQSAEVK-------WGRNDLWIDNRKVCGIAVRVVKEAIFHGIALNLNQD 157
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229 184 GSARAELIRRFYElglqgeatkfsypiivPSTMASLSELLGDELTIPAVmllLLRTLQSF 243
Cdd:cd16435   158 LENFTEIIPCGYK----------------PERVTSLSLELGRKVTVEQV---LERVLAAF 198
BPL_LplA_LipB pfam03099
Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, ...
73-183 2.75e-13

Biotin/lipoate A/B protein ligase family; This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organizm probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyzes the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.


Pssm-ID: 427135  Cd Length: 132  Bit Score: 65.16  E-value: 2.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2069583229  73 VSFLETNQYKVIVRNSGGL----AVVLD-DGVLNVSLVFPETTK----AIDIHQGYEAMWQLIKAMFSSygkvieAREIV 143
Cdd:pfam03099  17 SSELESGGVVVVRRQTGGRgrggNVWHSpKGCLTYSLLLSKEHPnvdpSVLEFYVLELVLAVLEALGLY------KPGIS 90
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2069583229 144 GSYCP--GSYDLSIDGKKFAGISQRRVRGGVAVQIYLCINGS 183
Cdd:pfam03099  91 GIPCFvkWPNDLYVNGRKLAGILQRSTRGGTLHHGVIGLGVN 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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