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Conserved domains on  [gi|2043517962|gb|QVQ53710|]
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D-2-hydroxyacid dehydrogenase family protein [Spiractinospora alimapuensis]

Protein Classification

D-2-hydroxyacid dehydrogenase family protein( domain architecture ID 10187398)

D-isomer specific 2-hydroxyacid dehydrogenase family protein similar to phosphoglycerate dehydrogenase, which catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, the first step in serine biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
7-312 7.23e-147

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


:

Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 415.37  E-value: 7.23e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDYQDISREFGDWTRLGDRVRLTVFNDHLSDVDALADRLEPFEVVCAMRERTTFDADLLRRLPRLRLLVTTGMRNP 86
Cdd:cd12169     2 IAILDDYQDVARTLADWSKLDDRAEVTVFNDHLLDEDALAERLAPFDAIVLMRERTPFPAALLERLPNLKLLVTTGMRNA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVCGTASPPTHTVELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIG 166
Cdd:cd12169    82 SIDLAAAKERGIVVCGTGGGPTATAELTWALILALARNLPEEDAALRAGGWQTTLGTGLAGKTLGIVGLGRIGARVARIG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 167 EAFGMRVLAWSANLTDERAAEHGARR-VTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQER 245
Cdd:cd12169   162 QAFGMRVIAWSSNLTAERAAAAGVEAaVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEG 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 246 PLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDG 312
Cdd:cd12169   242 ALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
 
Name Accession Description Interval E-value
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
7-312 7.23e-147

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 415.37  E-value: 7.23e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDYQDISREFGDWTRLGDRVRLTVFNDHLSDVDALADRLEPFEVVCAMRERTTFDADLLRRLPRLRLLVTTGMRNP 86
Cdd:cd12169     2 IAILDDYQDVARTLADWSKLDDRAEVTVFNDHLLDEDALAERLAPFDAIVLMRERTPFPAALLERLPNLKLLVTTGMRNA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVCGTASPPTHTVELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIG 166
Cdd:cd12169    82 SIDLAAAKERGIVVCGTGGGPTATAELTWALILALARNLPEEDAALRAGGWQTTLGTGLAGKTLGIVGLGRIGARVARIG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 167 EAFGMRVLAWSANLTDERAAEHGARR-VTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQER 245
Cdd:cd12169   162 QAFGMRVIAWSSNLTAERAAAAGVEAaVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEG 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 246 PLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDG 312
Cdd:cd12169   242 ALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
7-316 2.31e-81

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 249.24  E-value: 2.31e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDyqdisREFGD--WTRLGD-RVRLTVFNDHLSDvDALADRLEPFEVVCAMReRTTFDADLLRRLPRLRLLVTTGM 83
Cdd:COG1052     3 ILVLDP-----RTLPDevLERLEAeHFEVTVYEDETSP-EELAERAAGADAVITNG-KDPIDAEVLEALPGLKLIANRGV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  84 RNPAIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQ---HTVGADLHGRTlgvlglgrlg 159
Cdd:COG1052    76 GYDNIDLAAAKERGITVTNTPGYLTEAVaEHAVALLLALARRIVEADRRVRAGDWSwspGLLGRDLSGKTlgiiglgrig 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWSANLTDErAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRG 239
Cdd:COG1052   156 QAVARRAKGFGMKVLYYDRSPKPE-VAELGAEYVSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARG 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 240 PIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:COG1052   235 GLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDHPLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAGEPPP 311
2-Hacid_dh_C pfam02826
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted ...
115-288 2.56e-58

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.


Pssm-ID: 427007 [Multi-domain]  Cd Length: 178  Bit Score: 185.39  E-value: 2.56e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 115 WALILSLLRRVPAEDASIRGGGW---QHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSANLTDE-RAAEHGA 190
Cdd:pfam02826   1 LALLLALARRIPEADRQVRAGRWaspDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVIAYDRYPKPEeEEEELGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 191 RRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLP 270
Cdd:pfam02826  81 RYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLP 160
                         170
                  ....*....|....*...
gi 2043517962 271 VEHPLRSTPNTVLTPHIG 288
Cdd:pfam02826 161 ADHPLLDLPNVILTPHIA 178
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
81-318 4.01e-51

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 171.42  E-value: 4.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  81 TGMRNpaIDMDAARELGVTVC-----GTASPPTHTVeltwALILSLLRRVPAEDASIRGGGWQHTVG--------ADLHG 147
Cdd:PRK06487   75 TGTNN--VDLAAARERGITVCncqgyGTPSVAQHTL----ALLLALATRLPDYQQAVAAGRWQQSSQfclldfpiVELEG 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 148 RTLGVLGLGRLGSRVARIGEAFGMRVLawSANLtdeRAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLI 227
Cdd:PRK06487  149 KTLGLLGHGELGGAVARLAEAFGMRVL--IGQL---PGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALM 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 228 GSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRS--TPNTVLTPHIGYGTAGTYRTFFTETVAD 305
Cdd:PRK06487  224 KPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLApdIPRLIVTPHSAWGSREARQRIVGQLAEN 303
                         250
                  ....*....|...
gi 2043517962 306 IEAFLDGEPIRVV 318
Cdd:PRK06487  304 ARAFFAGKPLRVV 316
 
Name Accession Description Interval E-value
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
7-312 7.23e-147

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 415.37  E-value: 7.23e-147
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDYQDISREFGDWTRLGDRVRLTVFNDHLSDVDALADRLEPFEVVCAMRERTTFDADLLRRLPRLRLLVTTGMRNP 86
Cdd:cd12169     2 IAILDDYQDVARTLADWSKLDDRAEVTVFNDHLLDEDALAERLAPFDAIVLMRERTPFPAALLERLPNLKLLVTTGMRNA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVCGTASPPTHTVELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIG 166
Cdd:cd12169    82 SIDLAAAKERGIVVCGTGGGPTATAELTWALILALARNLPEEDAALRAGGWQTTLGTGLAGKTLGIVGLGRIGARVARIG 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 167 EAFGMRVLAWSANLTDERAAEHGARR-VTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQER 245
Cdd:cd12169   162 QAFGMRVIAWSSNLTAERAAAAGVEAaVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEG 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 246 PLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDG 312
Cdd:cd12169   242 ALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
7-316 2.31e-81

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 249.24  E-value: 2.31e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDyqdisREFGD--WTRLGD-RVRLTVFNDHLSDvDALADRLEPFEVVCAMReRTTFDADLLRRLPRLRLLVTTGM 83
Cdd:COG1052     3 ILVLDP-----RTLPDevLERLEAeHFEVTVYEDETSP-EELAERAAGADAVITNG-KDPIDAEVLEALPGLKLIANRGV 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  84 RNPAIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQ---HTVGADLHGRTlgvlglgrlg 159
Cdd:COG1052    76 GYDNIDLAAAKERGITVTNTPGYLTEAVaEHAVALLLALARRIVEADRRVRAGDWSwspGLLGRDLSGKTlgiiglgrig 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWSANLTDErAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRG 239
Cdd:COG1052   156 QAVARRAKGFGMKVLYYDRSPKPE-VAELGAEYVSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARG 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 240 PIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:COG1052   235 GLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDHPLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAGEPPP 311
SerA COG0111
Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; ...
7-316 3.47e-76

Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; Phosphoglycerate dehydrogenase or related dehydrogenase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439881 [Multi-domain]  Cd Length: 314  Bit Score: 235.86  E-value: 3.47e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDYQDISREfgdwtRLGDRVRLTVFNDHLSDVDALADRLEPFEVVCaMRERTTFDADLLRRLPRLRLLVTTGMRNP 86
Cdd:COG0111     3 ILILDDLPPEALE-----ALEAAPGIEVVYAPGLDEEELAEALADADALI-VRSRTKVTAELLAAAPNLKLIGRAGAGVD 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVCGTasPPTHTV---ELTWALILSLLRRVPAEDASIRGGGWQHT--VGADLHGRTlgvlglgrlgSR 161
Cdd:COG0111    77 NIDLAAATERGIPVTNA--PGANARavaEYALALLLALARRLPEADRAQRAGRWDRSafRGRELRGKTvgivglgrigRA 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 162 VARIGEAFGMRVLAWSANLTDERAAEHGARRV-TFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGP 240
Cdd:COG0111   155 VARRLRAFGMRVLAYDPSPKPEEAADLGVGLVdSLDELLAEADVVSLHLPLTPETRGLIGAEELAAMKPGAILINTARGG 234
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2043517962 241 IVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:COG0111   235 VVDEDALLAALDSGRLAGAALDVFEPEPLPADSPLWDLPNVILTPHIAGSTEEAQERAARQVAENIRRFLAGEPLR 310
PGDH_like_2 cd12172
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
88-296 2.75e-67

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240649 [Multi-domain]  Cd Length: 306  Bit Score: 212.73  E-value: 2.75e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIG 166
Cdd:cd12172    82 IDLEAAKKRGIVVTNTPGANSNSVaELTIGLMLALARQIPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRL 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 167 EAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERP 246
Cdd:cd12172   162 SGFGMKVLAYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEA 241
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2043517962 247 LVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYR 296
Cdd:cd12172   242 LYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVL 291
PGDH_4 cd12173
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
88-313 1.16e-66

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240650 [Multi-domain]  Cd Length: 304  Bit Score: 211.12  E-value: 1.16e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQ--HTVGADLHGRTLGVLGLGRLGSRVAR 164
Cdd:cd12173    76 IDVEAATARGILVVNAPGANTISVaEHTIALMLALARNIPQADASLRAGKWDrkKFMGVELRGKTLGIVGLGRIGREVAR 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 165 IGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQE 244
Cdd:cd12173   156 RARAFGMKVLAYDPYISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDE 235
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043517962 245 RPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGE 313
Cdd:cd12173   236 AALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAVLAGE 304
formate_dh_like cd05198
Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase ...
88-309 1.96e-64

Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family; Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240622 [Multi-domain]  Cd Length: 302  Bit Score: 205.17  E-value: 1.96e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGT--ASPPThTVELTWALILSLLRRVPAEDASIRGGG---WQHTVGADLHGRTLGVLGLGRLGSRV 162
Cdd:cd05198    77 IDLDAAKKRGITVTNVpgANAEA-VAEHALGLLLALLRRLPRADAAVRRGWgwlWAGFPGYELEGKTVGIVGLGRIGQRV 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 ARIGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIV 242
Cdd:cd05198   156 AKRLQAFGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLV 235
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 243 QERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAF 309
Cdd:cd05198   236 DEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLERF 302
GDH cd05301
D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, ...
88-312 3.91e-64

D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240626 [Multi-domain]  Cd Length: 309  Bit Score: 204.94  E-value: 3.91e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTaspP---THTV-ELTWALILSLLRRVPAEDASIRGGGWQ-----HTVGADLHGRTlgvlglgrl 158
Cdd:cd05301    79 IDVDAAKARGIPVTNT---PdvlTDATaDLAFALLLAAARRVVEGDRFVRAGEWKgwsptLLLGTDLHGKT--------- 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 159 gsrVA-----RIGEA-------FGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDL 226
Cdd:cd05301   147 ---LGivgmgRIGQAvarrakgFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLAL 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 227 IGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADI 306
Cdd:cd05301   224 MKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAELAADNL 303

                  ....*.
gi 2043517962 307 EAFLDG 312
Cdd:cd05301   304 LAVLAG 309
GDH_like_1 cd12161
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
88-318 7.05e-64

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240638 [Multi-domain]  Cd Length: 315  Bit Score: 204.38  E-value: 7.05e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIR-GGGWQHTVGADLHGRTLGVLGLGRLGSRVARI 165
Cdd:cd12161    83 VDLEACKERGITVSNAAGYSTEAVaELTIGLAIDLLRNIVPCDAAVRaGGTKAGLIGRELAGKTVGIVGTGAIGLRVARL 162
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 166 GEAFGMRVLAWSANLTDErAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQER 245
Cdd:cd12161   163 FKAFGCKVLAYSRSEKEE-AKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNE 241
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 246 PLVTALHDGTIAGAALDVYDVE-PLPVEHPLRSTPNTVLTPHIGYGT--AGTYRtffTETVAD-IEAFLDGEPIRVV 318
Cdd:cd12161   242 ALADALNEGKIAGAGIDVFDMEpPLPADYPLLHAPNTILTPHVAFATeeAMEKR---AEIVFDnIEAWLAGKPQNVV 315
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
87-316 6.35e-61

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 196.58  E-value: 6.35e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVC-----GTASPPTHTVeltwALILSLLRRVPAEDASIRGGGWQHTVGADLH---GRTLGVLGLGRL 158
Cdd:cd05299    78 NVDVAAATERGIPVCnvpdyCTEEVADHAL----ALILALARKLPFLDRAVRAGGWDWTVGGPIRrlrGLTLGLVGFGRI 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 159 GSRVARIGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSR 238
Cdd:cd05299   154 GRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTAR 233
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 239 GPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGT---AGTYRTFFTETVADieaFLDGEPI 315
Cdd:cd05299   234 GGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSeesLAELRRKAAEEVVR---VLRGEPP 310

                  .
gi 2043517962 316 R 316
Cdd:cd05299   311 R 311
2-Hacid_dh_11 cd12175
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
88-315 7.43e-61

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240652 [Multi-domain]  Cd Length: 311  Bit Score: 196.25  E-value: 7.43e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTVGA---DLHGRTLGVLGLGRLGSRVA 163
Cdd:cd12175    79 VDLEAATARGIPVANIPGGNAESVaEHAVMLMLALLRRLPEADRELRAGRWGRPEGRpsrELSGKTVGIVGLGNIGRAVA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 164 RIGEAFGMRVLAWSA-NLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIV 242
Cdd:cd12175   159 RRLRGFGVEVIYYDRfRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLV 238
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2043517962 243 QERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPI 315
Cdd:cd12175   239 DEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311
2-Hacid_dh_10 cd12171
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
88-310 1.44e-60

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240648 [Multi-domain]  Cd Length: 310  Bit Score: 195.83  E-value: 1.44e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGT----ASPpthTVELTWALILSLLRRVPAEDASIRGGGWQHT------VGADLHGRTLGVLGLGR 157
Cdd:cd12171    81 VDVEAATERGIPVLNTpgrnAEA---VAEFTVGLMLAETRNIARAHAALKDGEWRKDyynydgYGPELRGKTVGIVGFGA 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 158 LGSRVARIGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTS 237
Cdd:cd12171   158 IGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTA 237
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2043517962 238 RGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFL 310
Cdd:cd12171   238 RAGLVDEDALIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELKRYL 310
2-Hacid_dh_4 cd12162
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
81-310 4.64e-60

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240639 [Multi-domain]  Cd Length: 307  Bit Score: 194.21  E-value: 4.64e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  81 TGMRNpaIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQ---------HTVGaDLHGRTL 150
Cdd:cd12162    74 TGYNN--VDLAAAKERGITVTNVPGYSTDSVaQHTFALLLALARLVAYHNDVVKAGEWQkspdfcfwdYPII-ELAGKTL 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 151 GVLGLGRLGSRVARIGEAFGMRVLAwsANLTDerAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSG 230
Cdd:cd12162   151 GIIGYGNIGQAVARIARAFGMKVLF--AERKG--APPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPG 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 231 GYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRS-TPNTVLTPHIGYGTAGTYRTFFTETVADIEAF 309
Cdd:cd12162   227 AILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKaAPNLIITPHIAWASREARQRLMDILVDNIKAF 306

                  .
gi 2043517962 310 L 310
Cdd:cd12162   307 L 307
2-Hacid_dh_C pfam02826
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted ...
115-288 2.56e-58

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.


Pssm-ID: 427007 [Multi-domain]  Cd Length: 178  Bit Score: 185.39  E-value: 2.56e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 115 WALILSLLRRVPAEDASIRGGGW---QHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSANLTDE-RAAEHGA 190
Cdd:pfam02826   1 LALLLALARRIPEADRQVRAGRWaspDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVIAYDRYPKPEeEEEELGA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 191 RRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLP 270
Cdd:pfam02826  81 RYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLP 160
                         170
                  ....*....|....*...
gi 2043517962 271 VEHPLRSTPNTVLTPHIG 288
Cdd:pfam02826 161 ADHPLLDLPNVILTPHIA 178
PGDH_2 cd05303
Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate ...
32-310 6.69e-57

Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240628 [Multi-domain]  Cd Length: 301  Bit Score: 185.82  E-value: 6.69e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  32 LTVFNDHLSDVDALADRLEPFEVVCaMRERTTFDADLLRRLPR--LRLLVTTGMRNpaIDMDAARELGVTVCGTASPPTH 109
Cdd:cd05303    22 FEVDYEPLIAKEELLEKIKDYDVLI-VRSRTKVTKEVIDAAKNlkIIARAGVGLDN--IDVEYAKKKGIKVINTPGASSN 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 110 TV-ELTWALILSLLRRVPAEDASIRGGGW---QHTvGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSANLTDERA 185
Cdd:cd05303    99 SVaELVIGLMLSLARFIHRANREMKLGKWnkkKYK-GIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQA 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 186 AEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYD 265
Cdd:cd05303   178 VELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFE 257
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2043517962 266 VEPLPvEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFL 310
Cdd:cd05303   258 NEPPP-GSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEFL 301
2-Hacid_dh_13 cd12178
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
88-319 1.25e-53

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240655 [Multi-domain]  Cd Length: 317  Bit Score: 177.81  E-value: 1.25e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTH-TVELTWALILSLLRRVPAEDASIRGGGWQ-----HTVGADLHGRTLGVLGLGRLGSR 161
Cdd:cd12178    79 IDVDYAKEKGIPVTNTPAVSTEpTAELTFGLILALARRIAEGDRLMRRGGFLgwaplFFLGHELAGKTLGIIGMGRIGQA 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 162 VARIGEAFGMRVLAWSAN-LTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGP 240
Cdd:cd12178   159 VARRAKAFGMKILYYNRHrLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGP 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 241 IVQERPLVTALHDGTIAGAALDVYDVEPLPVEHpLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGE-PIRVVT 319
Cdd:cd12178   239 LVDEKALVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLEGKrPKNIVN 317
2-Hacid_dh_12 cd12177
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
88-319 1.05e-51

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240654 [Multi-domain]  Cd Length: 321  Bit Score: 173.28  E-value: 1.05e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTasPPTH----TVELTWALILSLLRRVPAEDASIRGGGWQ---HTVGADLHGRTLGVLGLGRLGS 160
Cdd:cd12177    83 VDLKAATEHGVIVTRV--PGAVerdaVAEHAVALILTVLRKINQASEAVKEGKWTeraNFVGHELSGKTVGIIGYGNIGS 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 161 RVARI-GEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRG 239
Cdd:cd12177   161 RVAEIlKEGFNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARG 240
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 240 PIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGE-PIRVV 318
Cdd:cd12177   241 ELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKePKGIL 320

                  .
gi 2043517962 319 T 319
Cdd:cd12177   321 N 321
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
81-318 4.01e-51

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 171.42  E-value: 4.01e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  81 TGMRNpaIDMDAARELGVTVC-----GTASPPTHTVeltwALILSLLRRVPAEDASIRGGGWQHTVG--------ADLHG 147
Cdd:PRK06487   75 TGTNN--VDLAAARERGITVCncqgyGTPSVAQHTL----ALLLALATRLPDYQQAVAAGRWQQSSQfclldfpiVELEG 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 148 RTLGVLGLGRLGSRVARIGEAFGMRVLawSANLtdeRAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLI 227
Cdd:PRK06487  149 KTLGLLGHGELGGAVARLAEAFGMRVL--IGQL---PGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALM 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 228 GSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRS--TPNTVLTPHIGYGTAGTYRTFFTETVAD 305
Cdd:PRK06487  224 KPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLApdIPRLIVTPHSAWGSREARQRIVGQLAEN 303
                         250
                  ....*....|...
gi 2043517962 306 IEAFLDGEPIRVV 318
Cdd:PRK06487  304 ARAFFAGKPLRVV 316
2-Hacid_dh_8 cd12167
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
91-316 2.72e-47

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240644 [Multi-domain]  Cd Length: 330  Bit Score: 161.96  E-value: 2.72e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  91 DAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTVGA----DLHGRTLGVLGLGRLGSRVARI 165
Cdd:cd12167    89 DAVWERGILVTSAADANAEPVaEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRrggrGLYGRTVGIVGFGRIGRAVVEL 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 166 GEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQER 245
Cdd:cd12167   169 LRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEA 248
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2043517962 246 PLVTALHDGTIaGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:cd12167   249 ALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDELERFLAGEPLL 318
PRK13243 PRK13243
glyoxylate reductase; Reviewed
7-313 4.06e-46

glyoxylate reductase; Reviewed


Pssm-ID: 183914  Cd Length: 333  Bit Score: 158.80  E-value: 4.06e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962   7 VAVLDDYQDISREFgdwtrLGDRVRltvfndhlsDVDALadrlepfevVCAMRERTTFDADLLRRLPRLRLLVTTGMRNp 86
Cdd:PRK13243   25 VEVWEDEREIPREV-----LLEKVR---------DVDAL---------VTMLSERIDCEVFEAAPRLRIVANYAVGYDN- 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 aIDMDAARELGVTVCGTASPPTH-TVELTWALILSLLRRVPAEDASIRGGGWQHT---------VGADLHGRTLGVLGLG 156
Cdd:PRK13243   81 -IDVEEATRRGIYVTNTPGVLTEaTADFAWALLLATARRLVEADHFVRSGEWKRRgvawhplmfLGYDVYGKTIGIIGFG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 157 RLGSRVARIGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNT 236
Cdd:PRK13243  160 RIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNT 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2043517962 237 SRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPvEHPLRSTPNTVLTPHIGYGTAGTyRTFFTETVA-DIEAFLDGE 313
Cdd:PRK13243  240 ARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEA-REGMAELVAeNLIAFKRGE 315
LDH_like_1 cd12187
D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; ...
88-317 1.66e-45

D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240663 [Multi-domain]  Cd Length: 329  Bit Score: 157.05  E-value: 1.66e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRV-PAEDASIRGGGWQHTV-GADLHGRTLGVLGLGRLGSRVAR 164
Cdd:cd12187    77 IDLEACRERGIAVCNVPDYGEATVaEHAFALLLALSRKLrEAIERTRRGDFSQAGLrGFELAGKTLGVVGTGRIGRRVAR 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 165 IGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQE 244
Cdd:cd12187   157 IARGFGMKVLAYDVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDT 236
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 245 RPLVTALHDGTIAGAALDVYDVEPLPVE--------------------HPLRSTPNTVLTPHIGYGTAGTYRTFFTETVA 304
Cdd:cd12187   237 EALVRALKEGKLAGAGLDVLEQEEVLREeaelfredvspedlkklladHALLRKPNVIITPHVAYNTKEALERILDTTVE 316
                         250
                  ....*....|...
gi 2043517962 305 DIEAFLDGEPIRV 317
Cdd:cd12187   317 NIKAFAAGQPQNV 329
2-Hacid_dh_6 cd12165
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
97-318 2.15e-45

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240642 [Multi-domain]  Cd Length: 314  Bit Score: 156.63  E-value: 2.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  97 GVTVCGTA--SPPThtVELTWALILSLLRRVPAEDASIRGGGW-QHTVGADLH----GRTLGVLGLGRLGSRVARIGEAF 169
Cdd:cd12165    82 GVVVANNHgnSPAV--AEHALALILALAKRIVEYDNDLRRGIWhGRAGEEPESkelrGKTVGILGYGHIGREIARLLKAF 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 170 GMRVLAwsANLTDERAAEHGARRVT--FPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPL 247
Cdd:cd12165   160 GMRVIG--VSRSPKEDEGADFVGTLsdLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEAL 237
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 248 VTALHDGTIAGAALDVYDVEP------LPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIRVV 318
Cdd:cd12165   238 YEALKERPIAGAAIDVWWRYPsrgdpvAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGEPLLNL 314
Mand_dh_like cd12168
D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified ...
88-314 3.18e-43

D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240645 [Multi-domain]  Cd Length: 321  Bit Score: 151.16  E-value: 3.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPT-HTVELTWALILSLLRRVPAEDASIRGGGWQ----HTVGADLHGRTLGVLGLGRLGSRV 162
Cdd:cd12168    90 IDVDALTKRGIQVSNTPGAVDeATADTALFLILGALRNFSRAERSARAGKWRgfldLTLAHDPRGKTLGILGLGGIGKAI 169
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 ARIGEAFGMRVLAWSAN-LTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPI 241
Cdd:cd12168   170 ARKAAAFGMKIIYHNRSrLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAV 249
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2043517962 242 VQERPLVTALHDGTIAGAALDVYDVEPLPveHP-LRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEP 314
Cdd:cd12168   250 IDEDALVDALESGKVASAGLDVFENEPEV--NPgLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEAFLETGK 321
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
40-316 4.14e-43

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 150.52  E-value: 4.14e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  40 SDVDALADRLEPFEVVCAmRERTTFDADLLRRLPRLRLLVT--TGMRNpaIDMDAARELGVTVCGTASPPTHTV-ELTWA 116
Cdd:pfam00389  26 LLTEELLEKAKDADALIV-RSRTKVTAEVLEAAPKLKVIGRagVGVDN--VDLDAATERGILVTNAPGYNTESVaELTIG 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 117 LILSLLRRVPAEDASIRGGGWQHTV--GADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSANLTDERAaEHGARRVT 194
Cdd:pfam00389 103 LILALARRIPEADASVREGKWKKSGliGLELYGKTLGVIGGGGIGGGVAAIAKAFGMGVVAYDPYPNPERA-EAGGVEVL 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 195 FPELLAES-----DVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHdGTIAGAALDVYDVEPL 269
Cdd:pfam00389 182 SLLLLLLDlpesdDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAAGGGVIDEAALDALLE-EGIAAAADLDVEEEPP 260
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2043517962 270 PVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:pfam00389 261 PVDSPLLDLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPPA 307
PGDH_3 cd12176
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
88-288 1.37e-39

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240653  Cd Length: 304  Bit Score: 141.18  E-value: 1.37e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGtaSPPTHT---VELTWALILSLLRRVPAEDASIRGGGWQHT-VGA-DLHGRTLGVLGLGRLGSRV 162
Cdd:cd12176    78 VDLDAAAKRGIPVFN--APFSNTrsvAELVIGEIIMLARRLPDRNAAAHRGIWNKSaTGShEVRGKTLGIIGYGHIGSQL 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 ARIGEAFGMRVLAWSAnltdERAAEHG-ARRV-TFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGP 240
Cdd:cd12176   156 SVLAEALGMRVIFYDI----AEKLPLGnARQVsSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGT 231
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2043517962 241 IVQERPLVTALHDGTIAGAALDVYDVEPL----PVEHPLRSTPNTVLTPHIG 288
Cdd:cd12176   232 VVDIDALAEALRSGHLAGAAVDVFPEEPAsngePFSSPLQGLPNVILTPHIG 283
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
81-313 3.42e-39

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 140.12  E-value: 3.42e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  81 TGMRNpaIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHT--------VGADLHGRTLG 151
Cdd:PRK08410   72 TGTNN--VDIEYAKKKGIAVKNVAGYSTESVaQHTFAMLLSLLGRINYYDRYVKSGEYSESpifthisrPLGEIKGKKWG 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 152 VLGLGRLGSRVARIGEAFGMRVLAWSANLTDERAaehGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGG 231
Cdd:PRK08410  150 IIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNE---EYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGA 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 232 YLVNTSRGPIVQERPLVTALHDGTIaGAALDVYDVEPLPVEHPLRSTPNT---VLTPHIGYGTAGTYRTFFTETVADIEA 308
Cdd:PRK08410  227 ILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKeklLITPHIAWASKEARKTLIEKVKENIKD 305

                  ....*
gi 2043517962 309 FLDGE 313
Cdd:PRK08410  306 FLEGG 310
HPPR cd12156
Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; ...
87-310 6.14e-39

Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240633 [Multi-domain]  Cd Length: 301  Bit Score: 139.14  E-value: 6.14e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  87 AIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQH---TVGADLHGRTLGVLGLGRLGSRV 162
Cdd:cd12156    77 GIDLDAARARGIRVTNTPGVLTDDVaDLAVGLLLAVLRRIPAADRFVRAGRWPKgafPLTRKVSGKRVGIVGLGRIGRAI 156
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 ARIGEAFGMRVLAWSANltdeRAAEHGARRVTFP-ELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPI 241
Cdd:cd12156   157 ARRLEAFGMEIAYHGRR----PKPDVPYRYYASLlELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSV 232
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043517962 242 VQERPLVTALHDGTIAGAALDVYDVEPLPVEhPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFL 310
Cdd:cd12156   233 VDEAALIAALQEGRIAGAGLDVFENEPNVPA-ALLDLDNVVLTPHIASATVETRRAMGDLVLANLEAFF 300
LDH_like cd01619
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
80-314 6.00e-37

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240620 [Multi-domain]  Cd Length: 323  Bit Score: 134.35  E-value: 6.00e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  80 TTGMRNpaIDMDAARELGVTVCGT-ASPPTHTVELTWALILSLLRRVPAEDASIRGGG--WQHTVGADLHGRTLGVLGLG 156
Cdd:cd01619    75 ATGYDN--IDLDYAKELGIGVTNVpEYSPNAVAEHTIALILALLRNRKYIDERDKNQDlqDAGVIGRELEDQTVGVVGTG 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 157 RLGSRVARIGEAFGMRVLAWSANLTDErAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNT 236
Cdd:cd01619   153 KIGRAVAQRAKGFGMKVIAYDPFRNPE-LEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINT 231
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 237 SRGPIVQERPLVTALHDGTIAGAALDVYDVE-------------PLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETV 303
Cdd:cd01619   232 ARGSLVDTEALIEALDSGKIFGAGLDVLEDEtpdllkdlegeifKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISC 311
                         250
                  ....*....|.
gi 2043517962 304 ADIEAFLDGEP 314
Cdd:cd01619   312 ENIVDFLEGEE 322
FDH cd05302
NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes ...
79-316 4.95e-36

NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form.


Pssm-ID: 240627  Cd Length: 348  Bit Score: 132.84  E-value: 4.95e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  79 VTTGMRNPAIDMDAARELGVTV-----CGTASPPTHTVeltwALILSLLRR-VPAEDASIRGGgWQhtVGA------DLH 146
Cdd:cd05302    89 LTAGIGSDHVDLQAANDRGITVaevtgSNVVSVAEHVV----MMILILVRNyVPGHEQAIEGG-WN--VADvvkrayDLE 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 147 GRTLGVLGLGRLGSRVARIGEAFGMRVLAWS-ANLTDERAAEHGARRV-TFPELLAESDVATIHLRLNDGTRGLIGAREL 224
Cdd:cd05302   162 GKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDrHRLPEEVEKELGLTRHaDLEDMVSKCDVVTINCPLHPETEGLFNKELL 241
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 225 DLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGyGTAGTYRTFFTETVA 304
Cdd:cd05302   242 SKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHIS-GTTLDAQARYAAGTK 320
                         250
                  ....*....|...
gi 2043517962 305 DI-EAFLDGEPIR 316
Cdd:cd05302   321 EIlERFFEGEPFR 333
PGDH_like_3 cd12174
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
88-292 7.01e-36

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240651 [Multi-domain]  Cd Length: 305  Bit Score: 131.14  E-value: 7.01e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVP--------AEDASIRGGGWQHT---VGADLHGRTLGVLGL 155
Cdd:cd12174    64 IDVDAASKRGIVVFNTPGANANAVaELVIAMMLALSRNIIqaikwvtnGDGDDISKGVEKGKkqfVGTELRGKTLGVIGL 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 156 GRLGSRVARIGEAFGMRVLAWSANLTDERAA---EHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGY 232
Cdd:cd12174   144 GNIGRLVANAALALGMKVIGYDPYLSVEAAWklsVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAI 223
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 233 LVNTSRGPIVQERPLVTALHDGTIAGAALDVYdvEPLPVEHPlrstPNTVLTPHIGYGTA 292
Cdd:cd12174   224 LLNFARGEIVDEEALLEALDEGKLGGYVTDFP--EPALLGHL----PNVIATPHLGASTE 277
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
88-312 5.48e-35

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 129.33  E-value: 5.48e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVcgTASP-----PThtVELTWALILSLLRRVPAEDASIRGGGW----QHTVGADLHGRTLGVLGLGRL 158
Cdd:cd12157    80 FDVEACTARGIWV--TIVPdlltePT--AELTIGLLIGLGRHILAGDRFVRSGKFggwrPKFYGTGLDGKTVGILGMGAL 155
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 159 GSRVARIGEAFGMRVLAWSAN-LTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTS 237
Cdd:cd12157   156 GRAIARRLSGFGATLLYYDPHpLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPC 235
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 238 RGPIVQERPLVTALHDGTIAGAALDVYDVE-------PLPVEHPLRS-TPNTVLTPHIGYGTAGTYRTFFTETVADIEAF 309
Cdd:cd12157   236 RGSVVDEAAVAEALKSGHLGGYAADVFEMEdwarpdrPRSIPQELLDqHDRTVFTPHIGSAVDEVRLEIELEAALNILQA 315

                  ...
gi 2043517962 310 LDG 312
Cdd:cd12157   316 LQG 318
PRK15409 PRK15409
glyoxylate/hydroxypyruvate reductase GhrB;
88-294 6.05e-34

glyoxylate/hydroxypyruvate reductase GhrB;


Pssm-ID: 185307  Cd Length: 323  Bit Score: 126.41  E-value: 6.05e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTVELT-WALILSLLRRVPAEDASIRGGGWQHTVGA-----DLHGRTLGVLGlgrlgsr 161
Cdd:PRK15409   80 FDVDALTARKILLMHTPTVLTETVADTlMALVLSTARRVVEVAERVKAGEWTASIGPdwfgtDVHHKTLGIVG------- 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 162 VARIGEA--------FGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYL 233
Cdd:PRK15409  153 MGRIGMAlaqrahfgFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIF 232
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2043517962 234 VNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGT 294
Cdd:PRK15409  233 INAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHET 293
2-Hacid_dh_1 cd05300
Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze ...
160-316 1.02e-33

Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.


Pssm-ID: 240625 [Multi-domain]  Cd Length: 313  Bit Score: 125.71  E-value: 1.02e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWSANltdERAAEHGARRV----TFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVN 235
Cdd:cd05300   147 REIARRAKAFGMRVIGVRRS---GRPAPPVVDEVytpdELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLIN 223
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 236 TSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIgygtAGTYRTFFtETVADI-----EAFL 310
Cdd:cd05300   224 VGRGSVVDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHI----SGDSPSYP-ERVVEIflenlRRYL 298

                  ....*.
gi 2043517962 311 DGEPIR 316
Cdd:cd05300   299 AGEPLL 304
PRK06932 PRK06932
2-hydroxyacid dehydrogenase;
81-309 4.24e-33

2-hydroxyacid dehydrogenase;


Pssm-ID: 235890 [Multi-domain]  Cd Length: 314  Bit Score: 124.14  E-value: 4.24e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  81 TGMRNpaIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGW---------QHTVgADLHGRTL 150
Cdd:PRK06932   74 TGTNN--VDLVAAKELGIAVKNVTGYSSTTVpEHVLGMIFALKHSLMGWYRDQLSDRWatckqfcyfDYPI-TDVRGSTL 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 151 GVLGLGRLGSRVARIGEAFGMRVLAwsanltderaAEH-GARRV-----TFPELLAESDVATIHLRLNDGTRGLIGAREL 224
Cdd:PRK06932  151 GVFGKGCLGTEVGRLAQALGMKVLY----------AEHkGASVCregytPFEEVLKQADIVTLHCPLTETTQNLINAETL 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 225 DLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPL----RSTPNTVLTPHIGYGTAGTYRTFFT 300
Cdd:PRK06932  221 ALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLiqaaKRLPNLLITPHIAWASDSAVTTLVN 300

                  ....*....
gi 2043517962 301 ETVADIEAF 309
Cdd:PRK06932  301 KVAQNIEEF 309
PRK11790 PRK11790
phosphoglycerate dehydrogenase;
88-288 5.68e-33

phosphoglycerate dehydrogenase;


Pssm-ID: 236985 [Multi-domain]  Cd Length: 409  Bit Score: 125.68  E-value: 5.68e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGtaSPPTHT---VELTWALILSLLRRVPAEDASIRGGGWQHT-VGA-DLHGRTLGVLGLGRLGSRV 162
Cdd:PRK11790   89 VDLDAAAKRGIPVFN--APFSNTrsvAELVIGEIILLLRGIPEKNAKAHRGGWNKSaAGSfEVRGKTLGIVGYGHIGTQL 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 ARIGEAFGMRVLAWSanlTDERAAEHGARRV-TFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPI 241
Cdd:PRK11790  167 SVLAESLGMRVYFYD---IEDKLPLGNARQVgSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV 243
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2043517962 242 VQERPLVTALHDGTIAGAALDVYDVEPL----PVEHPLRSTPNTVLTPHIG 288
Cdd:PRK11790  244 VDIDALADALKSGHLAGAAIDVFPVEPKsngdPFESPLRGLDNVILTPHIG 294
2-Hacid_dh_7 cd12166
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
97-318 1.08e-32

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240643 [Multi-domain]  Cd Length: 300  Bit Score: 122.70  E-value: 1.08e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  97 GVTVC-GTASPPTHTVELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLA 175
Cdd:cd12166    81 GVTLCnARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 176 WSanlTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGT 255
Cdd:cd12166   161 VA---RTARPGEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGR 237
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2043517962 256 IAgAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIRVV 318
Cdd:cd12166   238 LR-AALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQLRRYAAGEPLENV 299
LDH_like_2 cd12183
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
88-314 3.01e-32

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240659  Cd Length: 328  Bit Score: 122.17  E-value: 3.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTA--SPptHTV-ELTWALILSLLRRVPAEDASIRGGGW--QHTVGADLHGRTlgvlglgrlgsrV 162
Cdd:cd12183    82 VDLKAAKELGITVVRVPaySP--YAVaEHAVALLLALNRKIHRAYNRVREGNFslDGLLGFDLHGKT------------V 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 163 A-----RIGEA-------FGMRVLAWSANLtDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSG 230
Cdd:cd12183   148 GvigtgKIGQAfarilkgFGCRVLAYDPYP-NPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDG 226
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 231 GYLVNTSRGPIVQERPLVTALHDGTIAGAALDVY-------------DVEPLPVEHPLRSTPNTVLTPHIGygtagtyrt 297
Cdd:cd12183   227 VMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYeeeaglffedhsdEIIQDDVLARLLSFPNVLITGHQA--------- 297
                         250       260
                  ....*....|....*....|....*.
gi 2043517962 298 FFTE---------TVADIEAFLDGEP 314
Cdd:cd12183   298 FFTKealtniaetTLENLDDFEAGKP 323
HGDH_LDH_like cd12185
Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, ...
88-314 3.19e-32

Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains; This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240661  Cd Length: 322  Bit Score: 121.93  E-value: 3.19e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTVELTWALILSLLRRVP-------AEDASIRGggwqhTVGADLHGRTlgvlglgrlgs 160
Cdd:cd12185    82 IDLDAAKELGIKVSNVTYSPNSVADYTVMLMLMALRKYKqimkraeVNDYSLGG-----LQGRELRNLT----------- 145
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 161 rVA-----RIGEA-------FGMRVLAWSANLTDEraAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIG 228
Cdd:cd12185   146 -VGvigtgRIGQAviknlsgFGCKILAYDPYPNEE--VKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMK 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 229 SGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVY---------DVEPLPVEHP----LRSTPNTVLTPHIGYGTAGTY 295
Cdd:cd12185   223 DGVIIINTARGELIDTEALIEGLESGKIGGAALDVIegedgiyynDRKGDILSNRelaiLRSFPNVILTPHMAFYTDQAV 302
                         250
                  ....*....|....*....
gi 2043517962 296 RTFFTETVADIEAFLDGEP 314
Cdd:cd12185   303 SDMVENSIESLVAFEKGGE 321
LDH cd12186
D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding ...
88-302 1.35e-31

D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240662  Cd Length: 329  Bit Score: 120.33  E-value: 1.35e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTAS-PPTHTVELTWALILSLLRRVPAEDASIRGGG--WQH-TVGADLHGRTLGVLGLGRLGSRVA 163
Cdd:cd12186    82 IDLDLAKENGLKITNVPAySPRAIAEFAVTQALNLLRNTPEIDRRVAKGDfrWAPgLIGREIRDLTVGIIGTGRIGSAAA 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 164 RIGEAFGMRVLAWSAnLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQ 243
Cdd:cd12186   162 KIFKGFGAKVIAYDP-YPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVD 240
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2043517962 244 ERPLVTALHDGTIAGAALDVY---------DVEPLPVEHP----LRSTPNTVLTPHIGygtagtyrtFFTET 302
Cdd:cd12186   241 TKALIDALDSGKIAGAALDTYenetgyfnkDWSGKEIEDEvlkeLIAMPNVLITPHIA---------FYTDT 303
2-Hacid_dh_5 cd12163
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
85-287 3.31e-30

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240640  Cd Length: 334  Bit Score: 116.60  E-value: 3.31e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  85 NPAIDMDAARELGVTVC---GTASPP-THTVELTWaliLSLLRRVPAEDASIRGGGWQHTVGA----DLHGRTLGVLGLG 156
Cdd:cd12163    66 DHWLGHPLYKDPEVPLCtasGIHGPQiAEWVIGTW---LVLSHHFLQYIELQKEQTWGRRQEAysveDSVGKRVGILGYG 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 157 RLGSRVARIGEAFGMRVLAwsANLTDERAAE------------------------HGARRVTFPELLAES-DVATIHLRL 211
Cdd:cd12163   143 SIGRQTARLAQALGMEVYA--YTRSPRPTPEsrkddgyivpgtgdpdgsipsawfSGTDKASLHEFLRQDlDLLVVSLPL 220
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 212 NDGTRGLIGARELDLIGSGG-YLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHI 287
Cdd:cd12163   221 TPATKHLLGAEEFEILAKRKtFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSAPNVIITPHV 297
2-Hacid_dh_2 cd12159
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
112-314 3.57e-28

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240636  Cd Length: 303  Bit Score: 110.82  E-value: 3.57e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 112 ELTWALILSLLRRVPAedaSIRGGGWQHTVGADLHGrtlgvlglGRLGSRVARIG------------EAFGMRVLAWSAN 179
Cdd:cd12159    89 EHALALLLAGLRQLPA---RARATTWDPAEEDDLVT--------LLRGSTVAIVGaggigralipllAPFGAKVIAVNRS 157
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 180 LTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGA 259
Cdd:cd12159   158 GRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGA 237
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2043517962 260 ALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEP 314
Cdd:cd12159   238 ALDVTDPEPLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEP 292
2-Hacid_dh_15 cd12180
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
102-316 1.03e-27

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240657  Cd Length: 308  Bit Score: 109.35  E-value: 1.03e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 102 GTASPPThtVELTWALILSLLRRVPAEDASiRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSanlT 181
Cdd:cd12180    93 GVAAEAI--AEFVLAAILAAAKRLPEIWVK-GAEQWRREPLGSLAGSTLGIVGFGAIGQALARRALALGMRVLALR---R 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 182 DERAAEH-GARRV-TFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGA 259
Cdd:cd12180   167 SGRPSDVpGVEAAaDLAELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLA 246
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2043517962 260 ALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVADIEAFLDGEPIR 316
Cdd:cd12180   247 SLDVTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLH 303
2-Hacid_dh_3 cd12160
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
98-318 3.82e-27

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240637  Cd Length: 310  Bit Score: 107.85  E-value: 3.82e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  98 VTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGS-----------RVARI 165
Cdd:cd12160    82 VAVTSGRGLHDGTVaEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARvliwgfgsigqRLAPL 161
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 166 GEAFGMRVL--AWSANltdERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQ 243
Cdd:cd12160   162 LTALGARVTgvARSAG---ERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVD 238
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2043517962 244 ERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHigygTAGTYRTFFTETVAD-IEAFLDGEPIRVV 318
Cdd:cd12160   239 EDALVAALESGRLGGAALDVTATEPLPASSPLWDAPNLILTPH----AAGGRPQGAEELIAEnLRAFLAGGPLRNV 310
PRK07574 PRK07574
NAD-dependent formate dehydrogenase;
79-316 2.40e-26

NAD-dependent formate dehydrogenase;


Pssm-ID: 181041  Cd Length: 385  Bit Score: 107.07  E-value: 2.40e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  79 VTTGMRNPAIDMDAARELGVTV-----CGTASPPTHTVeltwALILSLLRR-VPAEDASIRGGgWQHT-VGA---DLHGR 148
Cdd:PRK07574  119 ITAGIGSDHVDLQAASEHGITVaevtgSNSISVAEHVV----MMILALVRNyEPSHRQAVEGG-WNIAdCVSrsyDLEGM 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 149 TLGVLGLGRLGSRVARIGEAFGMRVLAWSA-NLTDERAAEHGARR-VTFPELLAESDVATIHLRLNDGTRGLIGARELDL 226
Cdd:PRK07574  194 TVGIVGAGRIGLAVLRRLKPFDVKLHYTDRhRLPEEVEQELGLTYhVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSR 273
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 227 IGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGyGTAGTYRTFFTETVADI 306
Cdd:PRK07574  274 MKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHIS-GTTLSAQARYAAGTREI 352
                         250
                  ....*....|.
gi 2043517962 307 -EAFLDGEPIR 316
Cdd:PRK07574  353 lECFFEGRPIR 363
GDH_like_2 cd12164
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
160-315 3.20e-26

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240641 [Multi-domain]  Cd Length: 306  Bit Score: 105.27  E-value: 3.20e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWSANltdERAAE-----HGARRvtFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLV 234
Cdd:cd12164   145 AAVARRLAALGFPVSGWSRS---PKDIEgvtcfHGEEG--LDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALI 219
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 235 NTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIgygTAGTYRTFFTETVAD-IEAFLDGE 313
Cdd:cd12164   220 NVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI---AAITDPDSAAAQVAEnIRRLEAGE 296

                  ..
gi 2043517962 314 PI 315
Cdd:cd12164   297 PL 298
PGDH_1 cd12155
Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate ...
160-287 4.72e-25

Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240632 [Multi-domain]  Cd Length: 314  Bit Score: 102.27  E-value: 4.72e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVlaWSANlTDERAAEHGARRVTFPEL---LAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNT 236
Cdd:cd12155   148 QEIAKRLKAFGMKV--IGVN-TSGRDVEYFDKCYPLEELdevLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINV 224
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2043517962 237 SRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHI 287
Cdd:cd12155   225 GRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPHI 275
2-Hacid_dh_14 cd12179
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
82-296 5.63e-25

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240656 [Multi-domain]  Cd Length: 306  Bit Score: 101.99  E-value: 5.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  82 GMRNpaIDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTV--GADLHGRTLGVLGLGRL 158
Cdd:cd12179    72 GLEN--IDLEYAKEKGIELFNAPEGNRDAVgEHALGMLLALFNKLNRADQEVRNGIWDREGnrGVELMGKTVGIIGYGNM 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 159 GSRVARIGEAFGMRVLAWSA--NLTDERAAEhgarrVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNT 236
Cdd:cd12179   150 GKAFAKRLSGFGCKVIAYDKykNFGDAYAEQ-----VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINT 224
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043517962 237 SRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHP---------LRSTPNTVLTPHIGYGTAGTYR 296
Cdd:cd12179   225 ARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIfnqpeafeyLIKSPKVILTPHIAGWTFESYE 293
PLN03139 PLN03139
formate dehydrogenase; Provisional
79-287 1.03e-20

formate dehydrogenase; Provisional


Pssm-ID: 178684  Cd Length: 386  Bit Score: 91.45  E-value: 1.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  79 VTTGMRNPAIDMDAARELGVTVCG-TASPPTHTVELTWALILSLLRRVPAEDASIRGGGWQhtVGA------DLHGRTLG 151
Cdd:PLN03139  126 LTAGIGSDHIDLPAAAAAGLTVAEvTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWN--VAGiayrayDLEGKTVG 203
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 152 VLGLgrlgsrvARIGEAFGMRVLAWSANL--------TDERAAEHGARRVT-FPELLAESDVATIHLRLNDGTRGLIGAR 222
Cdd:PLN03139  204 TVGA-------GRIGRLLLQRLKPFNCNLlyhdrlkmDPELEKETGAKFEEdLDAMLPKCDVVVINTPLTEKTRGMFNKE 276
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2043517962 223 ELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHI 287
Cdd:PLN03139  277 RIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHI 341
PLN02928 PLN02928
oxidoreductase family protein
88-315 1.49e-19

oxidoreductase family protein


Pssm-ID: 215501  Cd Length: 347  Bit Score: 87.81  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPT----HTVELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVA 163
Cdd:PLN02928   96 VDVDAATKHGIKVARIPSEGTgnaaSCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELA 175
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 164 RIGEAFGMRVLA----WSANLTDERAA-----------EHGARRVTfpELLAESDVATIHLRLNDGTRGLIGARELDLIG 228
Cdd:PLN02928  176 KRLRPFGVKLLAtrrsWTSEPEDGLLIpngdvddlvdeKGGHEDIY--EFAGEADIVVLCCTLTKETAGIVNDEFLSSMK 253
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 229 SGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIGYGTAGTYRTfFTETVADIEA 308
Cdd:PLN02928  254 KGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRS-MGKIVGDAAL 332

                  ....*...
gi 2043517962 309 FL-DGEPI 315
Cdd:PLN02928  333 QLhAGRPL 340
ErythrP_dh cd12158
D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; ...
160-289 6.63e-19

D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240635 [Multi-domain]  Cd Length: 343  Bit Score: 85.66  E-value: 6.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWsanltDERAAEHGARR--VTFPELLAESDVATIHLRLNDG----TRGLIGARELDLIGSGGYL 233
Cdd:cd12158   128 SRLARRLEALGMNVLLC-----DPPRAEAEGDPgfVSLEELLAEADIITLHVPLTRDgehpTYHLLDEDFLAALKPGQIL 202
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2043517962 234 VNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPlpveHPLRSTPNTVL--TPHI-GY 289
Cdd:cd12158   203 INASRGAVIDNQALLALLQRGKDLRVVLDVWENEP----EIDLELLDKVDiaTPHIaGY 257
PRK06436 PRK06436
2-hydroxyacid dehydrogenase;
98-318 2.09e-18

2-hydroxyacid dehydrogenase;


Pssm-ID: 235800 [Multi-domain]  Cd Length: 303  Bit Score: 83.78  E-value: 2.09e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  98 VTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAW 176
Cdd:PRK06436   72 VVLCSNAGAYSISVaEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 177 SANLTDeraaEHGARRVTFPE-LLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGT 255
Cdd:PRK06436  152 TRSYVN----DGISSIYMEPEdIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHN 227
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2043517962 256 IAGAALDVYDVEPLPVEHPLRstpNTVLTPHIGYGTAGT-YRTFFTETVADIEAFLDGEPIRVV 318
Cdd:PRK06436  228 DKYYLSDVWWNEPIITETNPD---NVILSPHVAGGMSGEiMQPAVALAFENIKNFFEGKPKNIV 288
PLN02306 PLN02306
hydroxypyruvate reductase
88-315 2.93e-18

hydroxypyruvate reductase


Pssm-ID: 177941  Cd Length: 386  Bit Score: 84.52  E-value: 2.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTV-ELTWALILSLLRRVPAEDASIRGG---GWQHT--VGADLHGRTLGVLGLGRLGSR 161
Cdd:PLN02306  100 VDVEAANKYGIAVGNTPGVLTETTaELAASLSLAAARRIVEADEFMRAGlyeGWLPHlfVGNLLKGQTVGVIGAGRIGSA 179
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 162 VARIG-EAFGMRVL---------------AWSANLTDERAAEHGARRVTFPE-LLAESDVATIHLRLNDGTRGLIGAREL 224
Cdd:PLN02306  180 YARMMvEGFKMNLIyydlyqstrlekfvtAYGQFLKANGEQPVTWKRASSMEeVLREADVISLHPVLDKTTYHLINKERL 259
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 225 DLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLpVEHPLRSTPNTVLTPHIGYGTAGTYRTFFTETVA 304
Cdd:PLN02306  260 ALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREGMATLAAL 338
                         250
                  ....*....|.
gi 2043517962 305 DIEAFLDGEPI 315
Cdd:PLN02306  339 NVLGKLKGYPV 349
HGDH_like cd12184
(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic ...
88-288 9.39e-16

(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains; (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240660  Cd Length: 330  Bit Score: 76.56  E-value: 9.39e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTAS-PPTHTVELTWALILSLLRRVP-------AEDASIRGGGWQH-----TVGADLHGRTLGVLg 154
Cdd:cd12184    82 IDLEAAKELGFKMARVPSySPNAIAELAFTLAMTLSRHTAytasrtaNKNFKVDPFMFSKeirnsTVGIIGTGRIGLTA- 160
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 155 lgrlgsrvARIGEAFGMRVLAWSANLTDerAAEHGARRVTFPELLAESDVATIHLRLNDGTRG-LIGARELDLIGSGGYL 233
Cdd:cd12184   161 --------AKLFKGLGAKVIGYDIYPSD--AAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDkLINKEFISKMKDGAIL 230
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2043517962 234 VNTSRGPIVQERPLVTALHDGTIAGAALDV-----------YDVEPLP---VEHPLRSTPNTVLTPHIG 288
Cdd:cd12184   231 INTARGELQDEEAILEALESGKLAGFGTDVlnnekeiffkdFDGDKIEdpvVEKLLDLYPRVLLTPHIG 299
ghrA PRK15469
glyoxylate/hydroxypyruvate reductase GhrA;
160-315 1.49e-14

glyoxylate/hydroxypyruvate reductase GhrA;


Pssm-ID: 185366  Cd Length: 312  Bit Score: 72.91  E-value: 1.49e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARIGEAFGMRVLAWSANLTDERAAEHGARRVTFPELLAESDVaTIHLRLNDG-TRGLIGARELDLIGSGGYLVNTSR 238
Cdd:PRK15469  149 SKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRV-LINLLPNTPeTVGIINQQLLEQLPDGAYLLNLAR 227
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 239 GPIVQERPLVTALHDGTIAGAALDVYDVEPLPVEHPLRSTPNTVLTPHIgygtAGTYR-----TFFTETVADIEaflDGE 313
Cdd:PRK15469  228 GVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHV----AAVTRpaeavEYISRTIAQLE---KGE 300

                  ..
gi 2043517962 314 PI 315
Cdd:PRK15469  301 RV 302
PRK00257 PRK00257
4-phosphoerythronate dehydrogenase PdxB;
142-298 1.29e-13

4-phosphoerythronate dehydrogenase PdxB;


Pssm-ID: 166874 [Multi-domain]  Cd Length: 381  Bit Score: 70.83  E-value: 1.29e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 142 GADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLawsanLTD--ERAAEHGARRVTFPELLAESDVATIHLRLNDG----T 215
Cdd:PRK00257  111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-----VCDppRQEAEGDGDFVSLERILEECDVISLHTPLTKEgehpT 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 216 RGLIGARELDLIGSGGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEPLPveHPLRSTPNTVLTPHI-GY----- 289
Cdd:PRK00257  186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQI--DLELADLCTIATPHIaGYsldgk 263
                         170
                  ....*....|.
gi 2043517962 290 --GTAGTYRTF 298
Cdd:PRK00257  264 arGTAQIYQAL 274
PRK12480 PRK12480
D-lactate dehydrogenase; Provisional
89-289 1.86e-09

D-lactate dehydrogenase; Provisional


Pssm-ID: 183550  Cd Length: 330  Bit Score: 58.00  E-value: 1.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  89 DMDAARELGVTVCGTAS-PPTHTVELTWALILSLLRRVPAEDASIRGGG--WQHTV-GADLHGRTLGVLGLGRLGSRVAR 164
Cdd:PRK12480   84 DLDLAKKHNIVISNVPSySPETIAEYSVSIALQLVRRFPDIERRVQAHDftWQAEImSKPVKNMTVAIIGTGRIGAATAK 163
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 165 IGEAFGMRVLAWSANLTDerAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSRGPIVQE 244
Cdd:PRK12480  164 IYAGFGATITAYDAYPNK--DLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINT 241
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2043517962 245 RPLVTALHDGTIAGAALDVYDVEP---------LPVEHP----LRSTPNTVLTPHIGY 289
Cdd:PRK12480  242 PDLIAAVNDGTLLGAAIDTYENEAayftndwtnKDIDDKtlleLIEHERILVTPHIAF 299
PRK08605 PRK08605
D-lactate dehydrogenase; Validated
160-291 1.49e-08

D-lactate dehydrogenase; Validated


Pssm-ID: 181499  Cd Length: 332  Bit Score: 55.14  E-value: 1.49e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 160 SRVARI-GEAFGMRVLAWSAnLTDERAAEHGARRVTFPELLAESDVATIHLRLNDGTRGLIGARELDLIGSGGYLVNTSR 238
Cdd:PRK08605  159 LAVAKIfAKGYGSDVVAYDP-FPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR 237
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2043517962 239 GPIVQERPLVTALHDGTIAGAALDVYDVEP--LPVEH-----------PLRSTPNTVLTPHIGYGT 291
Cdd:PRK08605  238 GSLVDTKALLDALDNGLIKGAALDTYEFERplFPSDQrgqtindplleSLINREDVILTPHIAFYT 303
PRK15438 PRK15438
erythronate-4-phosphate dehydrogenase PdxB; Provisional
142-296 1.98e-06

erythronate-4-phosphate dehydrogenase PdxB; Provisional


Pssm-ID: 185335 [Multi-domain]  Cd Length: 378  Bit Score: 48.75  E-value: 1.98e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 142 GADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLawsanLTDERAAEHG--ARRVTFPELLAESDVATIHLRL-NDGTRGL 218
Cdd:PRK15438  111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTL-----LCDPPRADRGdeGDFRSLDELVQEADILTFHTPLfKDGPYKT 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 219 IGARELDLIGS---GGYLVNTSRGPIVQERPLVTALHDGTIAGAALDVYDVEP-LPVEHPLRStpnTVLTPHI-GYGTAG 293
Cdd:PRK15438  186 LHLADEKLIRSlkpGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPeLNVELLKKV---DIGTPHIaGYTLEG 262

                  ...
gi 2043517962 294 TYR 296
Cdd:PRK15438  263 KAR 265
2-Hacid_dh_9 cd12170
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
88-240 6.75e-05

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240647 [Multi-domain]  Cd Length: 294  Bit Score: 43.83  E-value: 6.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962  88 IDMDAARELGVTVCGTASPPTHTVEltwALILSLLRRVpaedasIRGGG---WQHtVGADLHGRTLGVLGLGRLGSRVAR 164
Cdd:cd12170    86 VDIAAARENGITVTGIRDYGDEGVV---EYVISELIRL------LHGFGgkqWKE-EPRELTGLKVGIIGLGTTGQMIAD 155
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2043517962 165 IGEAFGMRVLAWSANLTDERAAEhGARRVTFPELLAESDVATIHLRLNDgtrGLIGARELDLIGSGGYLVNTSRGP 240
Cdd:cd12170   156 ALSFFGADVYYYSRTRKPDAEAK-GIRYLPLNELLKTVDVICTCLPKNV---ILLGEEEFELLGDGKILFNTSLGP 227
FDH_GDH_like cd12154
Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related ...
133-280 4.34e-04

Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases.


Pssm-ID: 240631 [Multi-domain]  Cd Length: 310  Bit Score: 41.45  E-value: 4.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2043517962 133 RGGGWQHTVGADLHGRTLGVLGLGRLGSRVARIGEAFGMRVLAWSAN-LTDERAAEHGARRV-TFPELLAESDVATIHLR 210
Cdd:cd12154   146 VQQPGRLGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINvEALEQLEELGGKNVeELEEALAEADVIVTTTL 225
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2043517962 211 LNDGTRG-LIGARELDLIGSGGYLVNTSRGPIVQERPLVT-ALHDGTIAGAALDVYDVEPLPVE-HPLRSTPN 280
Cdd:cd12154   226 LPGKRAGiLVPEELVEQMKPGSVIVNVAVGAVGCVQALHTqLLEEGHGVVHYGDVNMPGPGCAMgVPWDATLR 298
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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