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Conserved domains on  [gi|1982304340|gb|QRL06057|]
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ribosomal protein S5, partial [Boloria polaris]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 21-201 7.55e-135

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 374.97  E-value: 7.55e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  21 KLFGRWSCYDVQVSDMSLQDHISVKekFAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 100
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340 101 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 180
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|.
gi 1982304340 181 INAAKGSSNSYAIKKKDELER 201
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELER 179
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 21-201 7.55e-135

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 374.97  E-value: 7.55e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  21 KLFGRWSCYDVQVSDMSLQDHISVKekFAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 100
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340 101 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 180
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|.
gi 1982304340 181 INAAKGSSNSYAIKKKDELER 201
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 19-201 5.17e-123

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 345.60  E-value: 5.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  19 EIKLFGRWSCYDVQVSDMSLQDHISVKEKFAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Cdd:PTZ00091    5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  99 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 178
Cdd:PTZ00091   85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                         170       180
                  ....*....|....*....|...
gi 1982304340 179 ELINAAKGSSNSYAIKKKDELER 201
Cdd:PTZ00091  165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 19-201 6.20e-107

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 304.77  E-value: 6.20e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  19 EIKLFGRWSCYDVQVSDMSLQDHISVKEKfakYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPI---YVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  99 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 178
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 1982304340 179 ELINAAKGSSNSYAIKKKDELER 201
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 67-201 3.94e-57

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 176.42  E-value: 3.94e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  67 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 146
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1982304340 147 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAIKKKDELER 201
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHR 126
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 66-201 2.39e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 75.10  E-value: 2.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 143
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1982304340 144 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 21-201 7.55e-135

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 374.97  E-value: 7.55e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  21 KLFGRWSCYDVQVSDMSLQDHISVKekFAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAF 100
Cdd:cd14867     1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340 101 EIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 180
Cdd:cd14867    79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                         170       180
                  ....*....|....*....|.
gi 1982304340 181 INAAKGSSNSYAIKKKDELER 201
Cdd:cd14867   159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 19-201 5.17e-123

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 345.60  E-value: 5.17e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  19 EIKLFGRWSCYDVQVSDMSLQDHISVKEKFAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Cdd:PTZ00091    5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  99 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 178
Cdd:PTZ00091   85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                         170       180
                  ....*....|....*....|...
gi 1982304340 179 ELINAAKGSSNSYAIKKKDELER 201
Cdd:PTZ00091  165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 19-201 6.20e-107

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 304.77  E-value: 6.20e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  19 EIKLFGRWSCYDVQVSDMSLQDHISVKEKfakYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPI---YVPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  99 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 178
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 1982304340 179 ELINAAKGSSNSYAIKKKDELER 201
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 15-201 3.80e-91

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 264.84  E-value: 3.80e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  15 ADIPEIKLFGRWSCYDVQVSDMSLQDHISVKEKfakYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 94
Cdd:PRK04027    6 AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPV---LVPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  95 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAE 174
Cdd:PRK04027   83 IVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEE 162

                         170       180
                  ....*....|....*....|....*..
gi 1982304340 175 CVADELINAAKGSSNSYAIKKKDELER 201
Cdd:PRK04027  163 ALAEEIIAAANNDPKSYAVRKKEEIER 189
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 67-201 3.94e-57

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 176.42  E-value: 3.94e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  67 AQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSP 146
Cdd:pfam00177   1 YNSPLVEKLINRLMRDG----KKSLAERIVYGAFDIIEEKTGKNPLEVFVKALENVKPRVEVKSRRVGGATYQVPVEVRP 76

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1982304340 147 LRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAIKKKDELER 201
Cdd:pfam00177  77 ERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAVKKKEETHR 126
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 66-201 2.66e-22

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 87.50  E-value: 2.66e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVD 143
Cdd:cd14869     6 KYNSVLVSKFINKLMKDG----KKSVAEKIVYDALEIIKKKTGKDPLEVFEKALENVKPLVEvrSRRVG--GATYQVPVE 79

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1982304340 144 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:cd14869    80 VRPERRQSLALrWII-EAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHK 132
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 66-201 2.39e-17

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 75.10  E-value: 2.39e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  66 KAQCPIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPR-E-DSTRIGraGTVRRQAVD 143
Cdd:COG0049    17 KYNSVLVTKFINKIMLDG----KKSVAEKIVYGALDIIEEKTGEDPLEVFEKALENVKPLvEvKSRRVG--GATYQVPVE 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1982304340 144 VSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:COG0049    91 VRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 71-201 9.51e-17

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 73.60  E-value: 9.51e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  71 IVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLR 148
Cdd:PRK05302   22 LVTKFINKLMLDG----KKSVAEKIVYGALDIIEEKTGKDPLEVFEKALENVKPVVEvkSRRVG--GATYQVPVEVRPER 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1982304340 149 RVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGssNSYAIKKKDELER 201
Cdd:PRK05302   96 RQALAMrWLV-EAARK---RGEKTMAERLANELLDAANN--RGAAVKKREDTHR 143
uS7_Chloroplast cd14871
Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific ...
 74-201 1.95e-15

Chloroplast homolog of Ribosomal Protein S7; Chloroplast RPS7 has both general and specific regulatory roles in chloroplast translation process. uS7, also known as Ribosomal protein (RP)S7, is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. The chloroplasts of plants and algae have bacterial ancestry, but it has adopted novel mechanisms in order to execute its roles within a eukaryotic cell. Chloroplast RPS7 is more homologous to bacterial RPS7 than other eukaryotic mitochondrial proteins. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The chloroplast translation regulation is more complex than in bacteria with additional RNA and chloroplast-unique proteins. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271250  Cd Length: 146  Bit Score: 70.00  E-value: 1.95e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  74 RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGTVRRQAVDVSPLRRVN 151
Cdd:cd14871    13 RLVNMLVNRILKSGKKSLAYRIVYEALKEIKQKTKQDPLEVLEQAIRNVTPLVEvkARRVG--GSTYQVPVEVRSERGTA 90

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1982304340 152 QAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:cd14871    91 LAIrWLL-KASRK---RSGRSMASKLANEIIDAAKNTGN--AIRKKEETHR 135
rps7 CHL00053
ribosomal protein S7
 60-201 1.72e-14

ribosomal protein S7


Pssm-ID: 176994  Cd Length: 155  Bit Score: 67.60  E-value: 1.72e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  60 AHKRFRKAQcPIVE-RLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRED--STRIGraGT 136
Cdd:CHL00053    7 AKKRTAKPD-PIYRnRLVNMLVNRILKSGKKSLAYRIVYRALKKIQQKTEKNPLSVLRQAIRNVTPDVEvkARRVG--GS 83

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1982304340 137 VRRQAVDVSPLRRVNQAI-WLLcTGAREAAFRNiktIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:CHL00053   84 TYQVPIEIGSTRGKALAIrWLL-KASRKRSGRN---MAFKLSSELVDAAKGSGN--AIRKKEETHR 143
uS7_Mitochondria_Fungi cd14868
Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP) ...
 70-201 2.19e-13

Fungal Mitochondrial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Fungal and plants mitochondrial RPS7 shows less homology to the mammalian than to bacterial RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit. RPS7 is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271247  Cd Length: 151  Bit Score: 64.52  E-value: 2.19e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1982304340  70 PIVERLTNSLMMHGrnngKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP--REDSTRigRAGTVRRQAVdvsPL 147
Cdd:cd14868    23 PLLEQLTNLIMKHG----KKAKAQRIVSRALLHIHTLTRADPLPLLRQAIDSAAPlvKIKSQK--KGAKNVQVPV---PL 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1982304340 148 R---RVNQAI-WLLctgarEAA-FRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 201
Cdd:cd14868    94 NerqRRRKAIkWIL-----EASdKRPGKSFSERLAEEIIAVVEGTSS--ALEKKEQVHK 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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