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Conserved domains on  [gi|1954872936|gb|QQM89232|]
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hypothetical protein JIK52_31460 (plasmid) [Klebsiella variicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UvrD super family cl33806
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
6-40 3.72e-03

Superfamily I DNA or RNA helicase [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG0210:

Pssm-ID: 439980 [Multi-domain]  Cd Length: 721  Bit Score: 32.60  E-value: 3.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1954872936   6 AVMTRSGNNLAVALPGSGKSTTCIAAIVDLLKADR 40
Cdd:COG0210    14 AVEHPEGPLLVLAGAGSGKTRVLTHRIAYLIAEGG 48
 
Name Accession Description Interval E-value
UvrD COG0210
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
6-40 3.72e-03

Superfamily I DNA or RNA helicase [Replication, recombination and repair];


Pssm-ID: 439980 [Multi-domain]  Cd Length: 721  Bit Score: 32.60  E-value: 3.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1954872936   6 AVMTRSGNNLAVALPGSGKSTTCIAAIVDLLKADR 40
Cdd:COG0210    14 AVEHPEGPLLVLAGAGSGKTRVLTHRIAYLIAEGG 48
mukB PRK04863
chromosome partition protein MukB;
5-36 9.50e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 31.47  E-value: 9.50e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1954872936    5 NAVMTRSGNNlavalpGSGKSTTCIAAIVDLL 36
Cdd:PRK04863    27 ELVTTLSGGN------GAGKSTTMAAFVTALI 52
 
Name Accession Description Interval E-value
UvrD COG0210
Superfamily I DNA or RNA helicase [Replication, recombination and repair];
6-40 3.72e-03

Superfamily I DNA or RNA helicase [Replication, recombination and repair];


Pssm-ID: 439980 [Multi-domain]  Cd Length: 721  Bit Score: 32.60  E-value: 3.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1954872936   6 AVMTRSGNNLAVALPGSGKSTTCIAAIVDLLKADR 40
Cdd:COG0210    14 AVEHPEGPLLVLAGAGSGKTRVLTHRIAYLIAEGG 48
PilT COG2805
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ...
 21-44 7.14e-03

Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];


Pssm-ID: 442056  Cd Length: 342  Bit Score: 31.60  E-value: 7.14e-03
                          10        20
                  ....*....|....*....|....
gi 1954872936  21 GSGKSTTcIAAIVDLLKADRkADH 44
Cdd:COG2805   135 GSGKSTT-LAAMIDYINETR-AKH 156
mukB PRK04863
chromosome partition protein MukB;
5-36 9.50e-03

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 31.47  E-value: 9.50e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1954872936    5 NAVMTRSGNNlavalpGSGKSTTCIAAIVDLL 36
Cdd:PRK04863    27 ELVTTLSGGN------GAGKSTTMAAFVTALI 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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