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Conserved domains on  [gi|1922070857|gb|QOU10075|]
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NADH dehydrogenase subunit 5 (mitochondrion) [Otomys sp. Mount Kenya]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl31799
NADH dehydrogenase subunit 5; Provisional
 278-601 3.24e-96

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00108:

Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 306.39  E-value: 3.24e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00108  279 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00108  359 MGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFP 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY 517
Cdd:MTH00108  439 PLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMTMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSN 518

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 YSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSNQKGLVKLYFMS***SLILV 597
Cdd:MTH00108  519 TFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEKILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLS 598


                  ....
gi 1922070857 598 TILY 601
Cdd:MTH00108  599 LLLF 602
ND5 super family cl31799
NADH dehydrogenase subunit 5; Provisional
 1-89 2.22e-12

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00108:

Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 69.88  E-value: 2.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857   1 MNTMSSSILMIFILL*******************************SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSL 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80


                  ....*....
gi 1922070857  81 KIDYFSILF 89
Cdd:MTH00108   81 KLDYFSMIF 89
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 278-601 3.24e-96

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 306.39  E-value: 3.24e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00108  279 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00108  359 MGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFP 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY 517
Cdd:MTH00108  439 PLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMTMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSN 518

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 YSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSNQKGLVKLYFMS***SLILV 597
Cdd:MTH00108  519 TFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEKILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLS 598


                  ....
gi 1922070857 598 TILY 601
Cdd:MTH00108  599 LLLF 602
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 279-348 1.36e-24

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 108.32  E-value: 1.36e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHN 348
Cdd:COG1009   281 IGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHA 350
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 452-600 1.28e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.01  E-value: 1.28e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 452 PIKRLALGSILAGFFISHNIPPTNIQIlTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY-YSLFSTSLGYFPP 530
Cdd:pfam06455  32 PIKRLAIGSIIGGSLLSWLIFPKPPMM-TMPLYLKLLALLVTILGLLLGLELSNLSNKQLKKSLNFnLHSFSGSMWFFPN 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 531 IMHRTFPLKTLNPSFKMSlNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLILVTIL 600
Cdd:pfam06455 111 LSHRLIPKLSLKLGQKLA-KQIDQGWSEKFGPQGIAKTLMTLSKIIQNsQKGLIKIYLLSFLLWLLLLLLL 180
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 278-353 1.04e-19

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 93.12  E-value: 1.04e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQ 357
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-89 2.22e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 69.88  E-value: 2.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857   1 MNTMSSSILMIFILL*******************************SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSL 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80


                  ....*....
gi 1922070857  81 KIDYFSILF 89
Cdd:MTH00108   81 KLDYFSMIF 89
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 278-601 3.24e-96

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 306.39  E-value: 3.24e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00108  279 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRK 358

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00108  359 MGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFP 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY 517
Cdd:MTH00108  439 PLITINENNPLLINPIKRLLLGSIFAGFLISNNIPPTTIPQMTMPLYLKLTALAVTILGFILALELNLLTNNLKFKYPSN 518

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 YSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSNQKGLVKLYFMS***SLILV 597
Cdd:MTH00108  519 TFKFSNMLGYFPTIMHRLPPYMNLTMSQKLASMLLDLIWLEKILPKTISLIQMKASTTISNQKGLIKLYFLSFLITLTLS 598


                  ....
gi 1922070857 598 TILY 601
Cdd:MTH00108  599 LLLF 602
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 278-601 4.27e-67

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 229.67  E-value: 4.27e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00004  278 CLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRK 357

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00004  358 MGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTP 437

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY 517
Cdd:MTH00004  438 PTTPINENTPTIINPITRLALGSILAGLLISSTILPTKTPPMTMPTTTKLAALIVTILGILLALELSNMTTTLTPPKQNT 517

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 YSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLIL 596
Cdd:MTH00004  518 LHNFSNQLAFFNPLTHRLLPMTLLKSSQKIATHLIDLSWLEKMGPKGLANLQLTASKTLTTlQKGLIKNYLTSFALTILL 597


                  ....*
gi 1922070857 597 VTILY 601
Cdd:MTH00004  598 LLLLT 602
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 278-603 8.46e-66

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 226.25  E-value: 8.46e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00137  284 CLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRK 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00137  364 MGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFN 443

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMK-FSTNKIN 516
Cdd:MTH00137  444 PLSPINENNPAVINPIKRLAWGSIIAGLLITSNILPLKTPVMTMPPLLKLAALIVTILGLLIALELASLTNKqFKPTPTL 523

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 517 YYSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLI 595
Cdd:MTH00137  524 PPHHFSNMLGFFPAIIHRLTPKLNLTLGQTIATQMVDQTWLEKTGPKGIASLQLPLITTTSNiQQGMIKTYLTLFLLTLA 603


                  ....*...
gi 1922070857 596 LVTILYIL 603
Cdd:MTH00137  604 LATLLLLL 611
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 278-601 5.36e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 220.94  E-value: 5.36e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00066  276 CLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRK 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00066  356 MGGLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSL 435

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY 517
Cdd:MTH00066  436 PLSPINENNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQILTMPTFMKLAALLVTLLGLLIALDLAKITSKTTPKTKMH 515

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 ysLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLIL 596
Cdd:MTH00066  516 --SFSNLLAFFPTIIHRLSPKTNLNSGQNIATHLTDMTWYEKSGPKGLTNQQLPPIKTITNiQTGLIKTYLTLFLITLLL 593


                  ....*
gi 1922070857 597 VTILY 601
Cdd:MTH00066  594 MLILL 598
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 278-603 1.21e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 200.95  E-value: 1.21e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ**** 357
Cdd:MTH00211  273 LLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQDIRK 352

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 358 ******************************************************************************** 437
Cdd:MTH00211  353 MGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFL 432

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 438 **************PIKRLALGSILAGFFISHNIPPTNIQILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKiny 517
Cdd:MTH00211  433 SLSPINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILSLPFLLKLMPLLVTIVGLLLGLELVNLTHKQLKTS--- 509

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 518 YSLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLIL 596
Cdd:MTH00211  510 TLSFSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLMDLGWYEKLGPKGLGVNQKKLIKLVTSpQQGLIKSYLALLLLSLLL 589


                  ....*..
gi 1922070857 597 VTILYIL 603
Cdd:MTH00211  590 ILLLFLL 596
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 279-604 2.13e-32

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 132.40  E-value: 2.13e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ***** 358
Cdd:MTH00208  306 LGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKM 385

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 359 ******************************************************************************** 438
Cdd:MTH00208  386 GGLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSP 465

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 439 *************PIKRLALGSILAGFFISHNIPPTNiqILTMPWYLKITALFISIMGFLIALELNNLSMKFSTNkiNYY 518
Cdd:MTH00208  466 LSPISEENPNLTNPLLRLAIGTIISGWFFSNFVFNLP--PLTLPLILKSLPLIVTIIGAAFSFSFLLSLSSNPIN--SNF 541

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 519 SLFSTSLGYFPPIMHRTFPLKTLNPSFKMSLNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLILV 597
Cdd:MTH00208  542 FSFLSNQWFFVNISHSIIISFSFFTSLFGSTRTLDRGWSENIGPQGIGNTSSTLSKSYQLtQTGYIKQYLLSSTLLFLLI 621


                  ....*..
gi 1922070857 598 TILYILS 604
Cdd:MTH00208  622 LTLSLII 628
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 279-348 1.36e-24

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 108.32  E-value: 1.36e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHN 348
Cdd:COG1009   281 IGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHA 350
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 452-600 1.28e-23

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 98.01  E-value: 1.28e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 452 PIKRLALGSILAGFFISHNIPPTNIQIlTMPWYLKITALFISIMGFLIALELNNLSMKFSTNKINY-YSLFSTSLGYFPP 530
Cdd:pfam06455  32 PIKRLAIGSIIGGSLLSWLIFPKPPMM-TMPLYLKLLALLVTILGLLLGLELSNLSNKQLKKSLNFnLHSFSGSMWFFPN 110

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 531 IMHRTFPLKTLNPSFKMSlNLLDLIWLEKSIPKATSTMHTNSSKLLSN-QKGLVKLYFMS***SLILVTIL 600
Cdd:pfam06455 111 LSHRLIPKLSLKLGQKLA-KQIDQGWSEKFGPQGIAKTLMTLSKIIQNsQKGLIKIYLLSFLLWLLLLLLL 180
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 278-353 1.78e-22

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 101.77  E-value: 1.78e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:PRK06590  286 IVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQ 361
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
280-351 3.22e-20

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 94.71  E-value: 3.22e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSD 351
Cdd:PRK07376  298 GAITAFLGASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEE 369
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 278-353 4.06e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 94.14  E-value: 4.06e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00151  245 FISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQ 320
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 278-353 1.04e-19

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 93.12  E-value: 1.04e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:TIGR01974 282 IIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQ 357
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 279-353 5.18e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 84.42  E-value: 5.18e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00165  249 ISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNSQ 323
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 279-353 7.63e-17

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 83.97  E-value: 7.63e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00020  280 VGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQ 354
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 278-353 1.30e-16

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 83.13  E-value: 1.30e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00210  280 ILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQ 355
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 279-353 4.62e-15

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 78.15  E-value: 4.62e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00209  245 LGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQ 319
ndhF CHL00025
NADH dehydrogenase subunit 5
 278-349 6.95e-15

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 78.01  E-value: 6.95e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNL 349
Cdd:CHL00025  296 LIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSM 367
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 283-347 1.61e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 76.73  E-value: 1.61e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 283 TTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:MTH00207  253 TMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIH 317
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 279-353 7.41e-13

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 71.53  E-value: 7.41e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY-LAFLHICTHAFFKAMLFMCSGSIIHNLS-DEQ 353
Cdd:MTH00032  295 FGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHnVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQ 371
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-89 2.22e-12

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 69.88  E-value: 2.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857   1 MNTMSSSILMIFILL*******************************SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSL 80
Cdd:MTH00108    1 MNLFTSSTLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSF 80


                  ....*....
gi 1922070857  81 KIDYFSILF 89
Cdd:MTH00108   81 KLDYFSMIF 89
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 279-347 9.16e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.48  E-value: 9.16e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---AFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:COG0651   278 LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGlagALFHLLNHALAKALLFLAAGAIER 349
PRK12650 PRK12650
DUF4040 family protein;
280-347 3.78e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 66.22  E-value: 3.78e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12650  279 GMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFaltAAVVHTLAHALFKSSLFMLIGVVDH 349
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 278-348 7.05e-11

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 64.93  E-value: 7.05e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHN 348
Cdd:PRK07390  289 VIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT 359
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 279-353 8.34e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 63.10  E-value: 8.34e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:pfam00361 153 LAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYgiqAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTR 230
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 280-347 1.04e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 64.83  E-value: 1.04e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12648  278 GLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLaavAAIFHIINHATFKASLFMAAGIIDH 348
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 279-347 2.33e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 63.07  E-value: 2.33e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---AFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12667  301 LGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGlaaALFHIINHAIAKSLLFLASGVFIH 372
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 279-353 2.34e-10

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 63.40  E-value: 2.34e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSIIHNLSDEQ 353
Cdd:MTH00095  233 IGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQ 307
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 279-347 8.32e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 61.86  E-value: 8.32e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQP--YLAFLH-ICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12644  273 LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaALAGLAmLLAHALFKAALFLVVGIIDH 344
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 280-347 1.49e-09

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 61.09  E-value: 1.49e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---AFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12647  266 GGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAikaAVLFLVAHSLYKGALFMVAGIIDH 336
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 279-345 3.22e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 59.51  E-value: 3.22e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQP---YLAFLHICTHAFFKAMLFMCSGSI 345
Cdd:PRK08375  277 LALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPlalAAGLLHLLHHALMKGALFLAAGAI 346
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 279-347 4.84e-09

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 59.13  E-value: 4.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGI-------NQPYLAFL-------HICTHAFFKAMLFMCSGS 344
Cdd:PRK06521  282 LGAISAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLamvfiayGMPLLAALaltaalyHLLNHALFKSLLFLGAGA 361


                  ...
gi 1922070857 345 IIH 347
Cdd:PRK06521  362 VLH 364
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
279-347 3.57e-08

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 56.44  E-value: 3.57e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---AFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12668  246 IGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLY 317
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 279-347 4.07e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 56.16  E-value: 4.07e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK08668  278 LGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLgfaGGLFHVFNHALFKGLFFLIFAAVIY 349
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
279-346 1.43e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 51.24  E-value: 1.43e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSII 346
Cdd:PRK08168  269 VGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASEAV 336
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 280-347 1.88e-06

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 51.08  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGI-----------NQPYL-----AFLHICTHAFFKAMLFMCSG 343
Cdd:PRK12645  281 GLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIgaaslhyqgddSKIYAaaitaAIFHLINHATFKGSLFMIVG 360


                  ....
gi 1922070857 344 SIIH 347
Cdd:PRK12645  361 IVDH 364
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 279-347 5.82e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 49.34  E-value: 5.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGI-------NQPYLAFL-------HICTHAFFKAMLFMCSGS 344
Cdd:PRK08667  276 AGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLyvifgvyGLDTLALLalggalfHSLNHALFKSLLFLTAGS 355


                  ...
gi 1922070857 345 IIH 347
Cdd:PRK08667  356 VVH 358
PRK12646 PRK12646
DUF4040 family protein;
279-347 5.82e-06

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 49.37  E-value: 5.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL-----------------AFLHICTHAFFKAMLFMC 341
Cdd:PRK12646  280 VGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAqhqqdaiasiyvfvlfaALFHLMNHAIFKCALFMG 359


                  ....*.
gi 1922070857 342 SGSIIH 347
Cdd:PRK12646  360 VGIIDH 365
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 279-349 1.48e-05

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 47.84  E-value: 1.48e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIHNL 349
Cdd:PRK08377  279 MATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAgvdAGVFHMINHAIVKALLFLAVGYVGITL 352
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 47-89 1.82e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 47.52  E-value: 1.82e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1922070857  47 SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSLKIDYFSILF 89
Cdd:MTH00137   51 SLLPLFLFLNQGAETIITNWNWMNTLTFDINISFKFDHYSIIF 93
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 278-348 1.94e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 1.94e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSIIHN 348
Cdd:PRK12662  284 ILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISYH 357
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 279-345 2.37e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 47.25  E-value: 2.37e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINqpylAFLHIcTHAFFKAMLFMCSGSI 345
Cdd:PRK07234  251 FGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAGAL 312
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-89 3.25e-05

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 46.70  E-value: 3.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857   1 MNTMSSSILMIFILL*******************************SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSL 80
Cdd:MTH00004    1 MTLLLNTTTLLTLLILLTPILLPLLSKNLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISF 80


                  ....*....
gi 1922070857  81 KIDYFSILF 89
Cdd:MTH00004   81 KLDQYSLMF 89
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 280-347 3.79e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 46.75  E-value: 3.79e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 280 GAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGI---NQPYLAF----LHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK12649  285 GMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYttyHEPGLGVaaatFHLLNHATFKACLFLVAGIVAH 359
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 279-349 4.91e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 46.24  E-value: 4.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---------------AFLHICTHAFFKAMLFMCSG 343
Cdd:PRK08376  293 LGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALgdpamasygeialagGIYHIVNHALYKALLFLTAG 372


                  ....*.
gi 1922070857 344 SIIHNL 349
Cdd:PRK08376  373 AVIYET 378
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 47-89 1.04e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 45.28  E-value: 1.04e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1922070857  47 SLLPLTWFFCSNTECMVTSWHWITM*SMKLSMSLKIDYFSILF 89
Cdd:MTH00066   45 SLIPLMIFINQGLESITTSFHWMNIFNFNINSSFKFDQYSIIF 87
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 279-346 2.21e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.15  E-value: 2.21e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQP---YLAFLHICTHAFFKAMLFMCSGSII 346
Cdd:PRK06458  287 FGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPlgiFAALLHMLNHSLTKSAIFFASGNVL 357
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 279-345 1.28e-03

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 41.50  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTL--GINQPYLAF----LHICTHAFFKAMLFMCSGSI 345
Cdd:PRK06525  278 MAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLslAILGSRLALegsiAYIFNHAFAKSLFFLVAGAL 350
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 279-347 1.86e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLG-------INQPYLAFL-------HICTHAFFKAMLFMCSGS 344
Cdd:PRK08042  251 LGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGagvtgiaLEQPALIALglvgglyHLLNHSLFKSVLFLGAGS 330


                  ...
gi 1922070857 345 IIH 347
Cdd:PRK08042  331 VWF 333
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 278-346 2.90e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 40.63  E-value: 2.90e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1922070857 278 CLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSII 346
Cdd:MTH00063  225 VLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVM 293
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 279-347 4.28e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 4.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1922070857 279 LGAITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPYL---AFLHICTHAFFKAMLFMCSGSIIH 347
Cdd:PRK07691  281 LALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK 352
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 282-346 4.71e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.80  E-value: 4.71e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1922070857 282 ITTLFTAICALTQNDIKKIVAFSTSSQLGLMMVTLGINQPY---LAFLHICTHAFFKAMLFMCSGSII 346
Cdd:PRK06589  289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKalgAAILHLVSHSFAKICLFYSMGSIY 356
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 292-346 9.74e-03

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 38.86  E-value: 9.74e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1922070857 292 LTQNDIKKIVAFSTSSQLGLMMVTLGINQPYLAFLHICTHAFFKAMLFMCSGSII 346
Cdd:PRK08601  285 LVQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAV 339
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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