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Conserved domains on  [gi|1917171642|gb|QOL11849|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Grallaria rufula spatiator]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-290 1.23e-122

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 354.13  E-value: 1.23e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSL 290
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-290 1.23e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 354.13  E-value: 1.23e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSL 290
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.15e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 2.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  91 HPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPT------LLTLMAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 165 GGWAGLNQTQIRKILAFSSISHLGWMTVIL----IYNPKLTLLTFYLYCLMTTTIF-----FTLNTAKTLKLSTMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171642 236 KIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-290 6.55e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 77.46  E-value: 6.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTS------------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 153 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTL--LTFYL--YCLMTTTIFFTLNT-AKTLKL 227
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLlSRKGGE 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171642 228 STMMTAW----TKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-290 2.46e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 69.59  E-value: 2.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  93 TSC------------LLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 154 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTL--LTFYL--YCLMTTTIFFTL------NTAK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171642 224 TLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-290 1.23e-122

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 354.13  E-value: 1.23e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00112    1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00112   81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00112  161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00112  241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSL 290
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-290 3.34e-105

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 309.81  E-value: 3.34e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00135    1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSlNPTLLTLMAIT 160
Cdd:MTH00135   81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00135  160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00135  240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSL 289
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-290 2.14e-103

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 305.31  E-value: 2.14e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00070    1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00070   81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00070  161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00070  241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSL 290
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-290 4.71e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 274.03  E-value: 4.71e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00105    1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00105   81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00105  161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00105  241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNL 290
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-290 1.42e-74

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 231.78  E-value: 1.42e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00200    1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT 160
Cdd:MTH00200   81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00200  161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00200  241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSL 290
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 12-290 1.03e-64

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 206.71  E-value: 1.03e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  12 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQLTH 91
Cdd:MTH00041   12 SIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPLN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAITSTALGGWAGLN 171
Cdd:MTH00041   92 TLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 172 QTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSLTATLMLTLLSL 251
Cdd:MTH00041  172 QTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSL 251

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1917171642 252 AGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00041  252 GGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSL 290
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-290 9.15e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 154.60  E-value: 9.15e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00160    2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGqwditqLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTShslNPTLLTLMAIT 160
Cdd:MTH00160   82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 161 STALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSL 240
Cdd:MTH00160  153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 1917171642 241 TATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00160  233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITL 282
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-290 3.96e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 136.94  E-value: 3.96e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   1 MSPQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWF 80
Cdd:MTH00144    1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  81 TGQWDITqlthptscLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-TLLTLMAI 159
Cdd:MTH00144   81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISV 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 160 TSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTaKTLKLSTMMTAWTKIPS 239
Cdd:MTH00144  153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYK 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1917171642 240 LTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00144  232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISL 282
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 12-290 4.17e-37

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 134.14  E-value: 4.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  12 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSmtnawfTGQWDITQLTH 91
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAITSTALGGWAGLN 171
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 172 QTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSLTATLMLTLLSL 251
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1917171642 252 AGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNL 286
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 12-290 3.10e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 115.93  E-value: 3.10e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  12 SLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMtnAWFTGQWditqlTH 91
Cdd:MTH00197    6 IIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGS--LSFSNLY-----LS 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHslNPTLLTLMAITSTALGGWAGLN 171
Cdd:MTH00197   79 LLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMN 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 172 QTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKIPSLTATLMLTLLSL 251
Cdd:MTH00197  157 QSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSL 236

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1917171642 252 AGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:MTH00197  237 GGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSL 275
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.15e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.83  E-value: 2.15e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  23 SNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  91 HPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPT------LLTLMAITSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 165 GGWAGLNQTQIRKILAFSSISHLGWMTVIL----IYNPKLTLLTFYLYCLMTTTIF-----FTLNTAKTLKLSTMMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 1917171642 236 KIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 9.14e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 79.30  E-value: 9.14e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  13 LTLGTTITISSNHWMMAWTGLEINTLAILPLI-SKPHHPRAI*******LTQAAASTLLLFS-------------SMTNA 78
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  79 WFTGQWDITQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNptLLTLMA 158
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 159 ITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVIL----IYNPKLTLLTFYLYCLMTTTIF---FTLNTAKTLkLSTMM 231
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1917171642 232 TAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLII 267
Cdd:MTH00196  239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-290 6.55e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 77.46  E-value: 6.55e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLF-SSMTNAwFTGQWDITQLTH 91
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTS------------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPT 152
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAfaallrlLVEAFPGLAADWQL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 153 LLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTL--LTFYL--YCLMTTTIFFTLNT-AKTLKL 227
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLlSRKGGE 350

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171642 228 STMMTAW----TKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISA 417
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-267 5.73e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 74.67  E-value: 5.73e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  10 VMSLTLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDI-- 86
Cdd:MTH00199  103 ILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqg 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  87 --TQLTHPTSCLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTlmAITSTAL 164
Cdd:MTH00199  183 inSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIY 260

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 165 GGWAGLNQTQIRKILAFSSISHLGWMTVILIYNP----KLTLLTFYLYCLMTTTIFF---TLNTAKTLkLSTMMTAWTKI 237
Cdd:MTH00199  261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSiilSLKLTKGL-IVEVSGLSRKN 339

                         250       260       270
                  ....*....|....*....|....*....|
gi 1917171642 238 PSLTATLMLTLLSLAGLPPFTGFLPKWLII 267
Cdd:MTH00199  340 PVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-290 2.46e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 69.59  E-value: 2.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  93 TSC------------LLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPP-------ITLLLLTSHSLNPTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlFLYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 154 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTL--LTFYL--YCLMTTTIFFTL------NTAK 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLsllrsyKDEW 351

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171642 224 TLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGA 418
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-289 1.22e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.54  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  14 TLGTTITISSNHWMMAWTGLEINTLAILPLIS-KPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQLTHP 92
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  93 TS------------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLP-------PITLLLLTSHSLNPTL 153
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafavllrLLVVAFGGLSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 154 LTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTL--LTFYL--YCLMTTTIF-FTLNTAKTLKLS 228
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgVISLLRRKGGEA 352

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1917171642 229 TMMTAWTKI----PSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLG 289
Cdd:PRK05777  353 ESISDFAGLskrsPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIG 417
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-290 1.50e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 64.49  E-value: 1.50e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642   3 PQAKLVSVMSLTLGTTITISSNHWMMAWTGLEINTLAILPLISKPHHPRAI*******---------LTQAAASTLLLFS 73
Cdd:MTH00198  187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHFPSPGNTppesglkywILGAMSSGFYLFG 266

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  74 SMTNAWFTGQ----WDITQLTHPTS----------CLLLTTAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPI 139
Cdd:MTH00198  267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 140 TLLLLTSHSLNptLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVIL---IYNPKLTLLTFYLYCLMTTTIF 216
Cdd:MTH00198  347 ILLTSLVITSK--LLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagTYESLQASWTYAVTYLVSALAS 424

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 217 FTL----------------------NTAKTLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQE 274
Cdd:MTH00198  425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIA 504

                         330
                  ....*....|....*.
gi 1917171642 275 MTTTATIIALLSLLGL 290
Cdd:MTH00198  505 FSSSLSIYYLVALFAI 520
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-290 4.17e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 62.86  E-value: 4.17e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  30 WTGLEINTLAILPLISKPHHPRAI*******LTQAAASTLLLFSSMTNAWFTGQWDITQLTH----------PTSCLLLT 99
Cdd:COG0651   133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 100 TAISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAM---------KLPPITLLLLTSHSLNPTLLTLMAITStALGGWAGL 170
Cdd:COG0651   213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtkvgvyailRVLTLLFGADPALFLGTLLLVLGLLTM-LVGALGAL 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 171 NQTQIRKILAFSSISHLGWMTV-ILIYNPK-LTLLTFYL--YCLMTTTIFFT----LNTAKTLKLSTMMTAWTKIPSLTA 242
Cdd:COG0651   292 AQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAA 371

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1917171642 243 TLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:COG0651   372 AFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTL 419
ndhB CHL00049
NADH dehydrogenase subunit 2
 87-263 8.56e-09

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.17  E-value: 8.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  87 TQLTHPTSCLL----LTTAISMKLGLVPFHFWFPEVLQGS-----------SLTTGLLLATAMKLPPITLLLLTSHSlnp 151
Cdd:CHL00049  205 TQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRIFDIPFYFSSNEWHL--- 281

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 152 tLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILI-------YNPKLTLLTFYLYCLMTT---TIFFTLNT 221
Cdd:CHL00049  282 -LLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMNLGTfacIVLFGLRT 360

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1917171642 222 AkTLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPK 263
Cdd:CHL00049  361 G-TDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-290 1.16e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.41  E-value: 1.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  97 LLTTAISMKLGLVPFHFWFPEVLQG-SSLTTGLLLATAMK------LPPITLLLLTSHSLNPTLLTLMAITSTA---LGG 166
Cdd:PRK08375  207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKvavyalIRIYFTVFGGDFRFALGLGWLLAVLALLsmlVGS 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 167 WAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLL--TFYL--YCLMTTTIFFTLN----TAKTLKLSTMMTAWTKIP 238
Cdd:PRK08375  287 LAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGaievTYGTRRLSELSGLGRRMP 366

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1917171642 239 SLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:PRK08375  367 LTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLAL 418
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
102-263 1.59e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 45.81  E-value: 1.59e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 102 ISMKLGLVPFHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNP-------TLLTLMAITSTALGGWAGLNQTQ 174
Cdd:PRK02504  220 IAFKISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPsfdeqwkLLFTALAILSMVLGNVVALAQTS 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 175 IRKILAFSSISHLGWMTVILI------YNPKLTLLTFYLY---CLMTTTIFFTLNTAkTLKLSTMMTAWTKIPSLTATLM 245
Cdd:PRK02504  300 MKRMLAYSSIGQAGFVMIGLVagteagYASMVFYLLAYLFmnlGAFACVILFSLRTG-TDQISDYAGLYQKDPLLTLGLS 378

                         170
                  ....*....|....*...
gi 1917171642 246 LTLLSLAGLPPFTGFLPK 263
Cdd:PRK02504  379 LCLLSLGGIPPLAGFFGK 396
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 1.62e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  96 LLLTTAISmKLGLVPFHFWFPEVLQGSSLTTGLLLATAMK------LPPITLLLLTSHSLNPTLLTLMAITsTALGGWAG 169
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVkagiylVARLAPGFADVPVWRPTVLVLGLAT-MLLGGWRA 285

                          90       100
                  ....*....|....*....|....*
gi 1917171642 170 LNQTQIRKILAFSSISHLGWMTVIL 194
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-266 2.21e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 42.39  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  97 LLTTAISMKLGLVPFHFWFPEVLQG--SSLTTGLLLATA------MKLPPITLLLLTSHSLNPTLLTLMAITSTALGGWA 168
Cdd:PRK08376  225 LFIAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQaglyalARVLFSIYGPAINLATVGWVIIILGCLTMFVGVAM 304

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 169 GLNQTQIRKILAFSSISHLGWMTV---ILIYNPKLTLLTFYLYCLMTTTIFFTLNTA-----------------KTLKLS 228
Cdd:PRK08376  305 AVVQKDVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHAlykallfltagaviyetGTRNLN 384

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1917171642 229 TMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLI 266
Cdd:PRK08376  385 ELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 151-194 1.53e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 39.75  E-value: 1.53e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1917171642 151 PTLLTLMAI--TSTAL-GGWAGLNQTQIRKILAFSSISHLGWMTVIL 194
Cdd:COG1009   272 PVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 2.12e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 39.56  E-value: 2.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  92 PTSCLLLTTAI--SMKLGLvpfHFWFPEVLQGSSLTTGLLLATAMKLPPITLLLLTSHSLNPTLLTLMAIT-----STAL 164
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 165 GGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYL--YCLMTTTIFFTLN------TAKTLKLSTMMTAWTK 236
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1917171642 237 IPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 96-289 4.32e-03

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 38.44  E-value: 4.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  96 LLLTTAISMKLGLVPFHFWFPE-----------VLQGSSLTTG-----LLLATAM--KLPPITLLLLTSHSLNPTLLTLM 157
Cdd:PRK08668  200 LFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFNYILAWLG 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 158 AITsTALGGWAGLNQTQIRKILAFSSISHLGWmtvILIYNPKLTLLTF-------YLYCLMTTTIFFTLNT----AKTLK 226
Cdd:PRK08668  280 NIS-IIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTK 355

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1917171642 227 LSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLG 289
Cdd:PRK08668  356 ISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGS 418
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
152-268 4.67e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 38.39  E-value: 4.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 152 TLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTV-ILIYNPK-LTLLTFYLYCLMT--TTIFFTLNTAKTL-- 225
Cdd:PRK12663  273 PLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtg 352

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1917171642 226 --KLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQ 268
Cdd:PRK12663  353 yrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 152-290 9.69e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 37.41  E-value: 9.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 152 TLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLY----CLMTTTIFFTLNTAK---- 223
Cdd:PRK12662  280 NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfg 359

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1917171642 224 TLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLGL 290
Cdd:PRK12662  360 TTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSV 426
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 94-289 9.76e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 37.43  E-value: 9.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642  94 SCLLLTTAISMKLGLVPFHFWFPEVLQG-----SSLTTGLLLATAMKLPPITLLLLTSHSLNPT---LLTLMAITSTALG 165
Cdd:PRK08676  208 SFLFIFIGFLAKSGLVPFHTWLPAAYAKapsvvSALLSGTVLNIGIYGILRLSALLRQSGAAEQfsnVLIGLGIFSIAVA 287

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 166 GWAGLNQTQIRKILAFSSISHLGWM-TVILIYNPKL---TLLTFYLYCLMTTTIFFTLNTAKTLKLSTMMTAWTKI---- 237
Cdd:PRK08676  288 AFSMLSQRNLKKLIAFSSIEHMGLMlLGIGIGTPLAlfwMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVfrlq 367

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1917171642 238 PSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTKQEMTTTATIIALLSLLG 289
Cdd:PRK08676  368 PVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAA 419
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 152-289 9.94e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 37.21  E-value: 9.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1917171642 152 TLLTLMAITSTALGGWAGLNQTQIRKILAFSSISHLGWMTVILIYNPKLTLLTFYLY----CLMTTTIFFTLNT----AK 223
Cdd:PRK12647  260 TILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTG 339

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1917171642 224 TLKLSTMMTAWTKIPSLTATLMLTLLSLAGLPPFTGFLPKWLIIQELTkqEMTTTATIIALLSLLG 289
Cdd:PRK12647  340 TRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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